Wall clock time and date at job start Mon Mar 30 2020 00:47:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46502 * 109.47317 * 2 1 4 4 C 1.34771 * 119.99825 * 275.13923 * 3 2 1 5 5 O 1.21281 * 119.99696 * 185.19221 * 4 3 2 6 6 C 1.50703 * 120.00659 * 5.19080 * 4 3 2 7 7 C 1.52996 * 109.47628 * 180.02562 * 6 4 3 8 8 C 1.53006 * 117.49750 * 243.62539 * 7 6 4 9 9 C 1.52992 * 117.49894 * 175.00016 * 7 6 4 10 10 C 1.46500 * 119.99557 * 95.13435 * 3 2 1 11 11 H 1.09002 * 110.91055 * 190.39609 * 10 3 2 12 12 C 1.55157 * 111.00060 * 66.50160 * 10 3 2 13 13 C 1.54331 * 102.93805 * 277.42019 * 12 10 3 14 14 N 1.47023 * 107.27136 * 337.81157 * 13 12 10 15 15 C 1.36936 * 125.64613 * 178.97837 * 14 13 12 16 16 H 1.07995 * 119.99945 * 174.93299 * 15 14 13 17 17 C 1.38815 * 119.99813 * 354.92739 * 15 14 13 18 18 N 1.31619 * 120.00246 * 5.72192 * 17 15 14 19 19 Si 1.86805 * 119.99682 * 185.72317 * 17 15 14 20 20 H 1.48505 * 109.47043 * 94.99931 * 19 17 15 21 21 H 1.48496 * 109.46889 * 214.99539 * 19 17 15 22 22 H 1.48501 * 109.47203 * 334.99561 * 19 17 15 23 23 C 1.47423 * 108.70258 * 358.93967 * 14 13 12 24 24 H 1.09000 * 109.47271 * 300.00219 * 1 2 3 25 25 H 1.09002 * 109.47231 * 59.99754 * 1 2 3 26 26 H 1.09005 * 109.47790 * 179.97438 * 1 2 3 27 27 H 1.09006 * 109.46879 * 239.99933 * 2 1 3 28 28 H 1.08995 * 109.47096 * 120.00567 * 2 1 3 29 29 H 1.09004 * 109.46698 * 300.00683 * 6 4 3 30 30 H 1.08995 * 109.47039 * 59.99735 * 6 4 3 31 31 H 1.09001 * 115.54935 * 29.32456 * 7 6 4 32 32 H 1.09001 * 117.49333 * 359.97438 * 8 7 6 33 33 H 1.08993 * 117.49578 * 145.01842 * 8 7 6 34 34 H 1.09006 * 117.49499 * 214.97238 * 9 7 6 35 35 H 1.08997 * 117.50205 * 359.97438 * 9 7 6 36 36 H 1.08997 * 110.71841 * 159.06331 * 12 10 3 37 37 H 1.08997 * 110.72864 * 35.78540 * 12 10 3 38 38 H 1.09000 * 109.87965 * 97.22842 * 13 12 10 39 39 H 1.08997 * 109.87954 * 218.38913 * 13 12 10 40 40 H 0.97002 * 119.99553 * 179.97438 * 18 17 15 41 41 H 1.08992 * 110.36360 * 142.96789 * 23 14 13 42 42 H 1.09001 * 110.36765 * 265.28933 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1444 2.0513 -1.1625 5 8 2.6366 3.1598 -1.1731 6 6 1.6739 1.4235 -2.4492 7 6 1.9311 2.3860 -3.6103 8 6 0.7138 2.9205 -4.3677 9 6 1.6289 1.8845 -5.0238 10 6 2.3696 2.0339 1.2637 11 1 2.5372 3.1009 1.1170 12 6 3.6078 1.3603 1.9120 13 6 2.9976 0.1454 2.6424 14 7 1.5752 0.4411 2.8681 15 6 0.6726 -0.3934 3.4715 16 1 -0.3336 -0.0517 3.6644 17 6 1.0509 -1.6786 3.8349 18 7 2.3044 -2.0576 3.7036 19 14 -0.2193 -2.8702 4.5105 20 1 -0.7399 -3.7169 3.4071 21 1 0.4108 -3.7332 5.5416 22 1 -1.3386 -2.1077 5.1197 23 6 1.2819 1.7852 2.3382 24 1 -0.3634 0.5139 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3635 -1.0277 -0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 2.2180 0.4946 -2.6203 30 1 0.6068 1.2123 -2.3814 31 1 2.7810 3.0570 -3.4853 32 1 -0.2701 2.5861 -4.0389 33 1 0.7628 3.9434 -4.7410 34 1 2.2797 2.2260 -5.8288 35 1 1.2472 0.8687 -5.1265 36 1 4.0871 2.0355 2.6209 37 1 4.3147 1.0360 1.1483 38 1 3.0972 -0.7469 2.0245 39 1 3.5013 -0.0043 3.5974 40 1 2.5688 -2.9556 3.9580 41 1 0.2903 1.8066 1.8862 42 1 1.3545 2.5297 3.1309 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001665692045.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:47:32 Heat of formation + Delta-G solvation = 8.044115 kcal Electronic energy + Delta-G solvation = -21590.684027 eV Core-core repulsion = 18572.047828 eV Total energy + Delta-G solvation = -3018.636199 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.38243 -39.29619 -37.79695 -36.09353 -34.26482 -31.89266 -30.64163 -30.33021 -28.79953 -26.32965 -24.18179 -23.18774 -22.78041 -21.91655 -21.13204 -19.79551 -18.83279 -18.27696 -17.39127 -16.70182 -16.60012 -15.95724 -15.64395 -15.29702 -14.91666 -14.71321 -14.28936 -14.11003 -13.75336 -13.66358 -13.47202 -13.23784 -12.91821 -12.81500 -12.63474 -12.38487 -12.31973 -12.15839 -12.00937 -11.97487 -11.80146 -11.52920 -11.39257 -11.21437 -10.90444 -10.64075 -10.52080 -9.57983 -8.80210 -7.78744 -5.12028 1.50450 1.51958 1.59517 1.67741 2.07702 2.54032 2.95413 3.41322 3.55949 3.71356 3.82330 3.92926 4.03170 4.08336 4.18511 4.21278 4.32804 4.45730 4.57086 4.62925 4.66749 4.72133 4.74971 4.83054 4.84116 4.89454 4.98387 5.05533 5.07357 5.08307 5.29179 5.30779 5.38600 5.53441 5.55406 5.66998 5.76890 5.83885 6.23413 6.59897 7.16204 7.24689 7.81832 8.47745 9.31609 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.028069 B = 0.005372 C = 0.004886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.304164 B = 5210.901269 C = 5728.769889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.093 3.907 3 N -0.588 5.588 4 C 0.511 3.489 5 O -0.586 6.586 6 C -0.101 4.101 7 C -0.159 4.159 8 C -0.180 4.180 9 C -0.163 4.163 10 C 0.133 3.867 11 H 0.100 0.900 12 C -0.143 4.143 13 C 0.188 3.812 14 N -0.610 5.610 15 C -0.224 4.224 16 H 0.078 0.922 17 C -0.053 4.053 18 N -0.947 5.947 19 Si 0.965 3.035 20 H -0.285 1.285 21 H -0.302 1.302 22 H -0.274 1.274 23 C 0.125 3.875 24 H 0.048 0.952 25 H 0.063 0.937 26 H 0.061 0.939 27 H 0.082 0.918 28 H 0.092 0.908 29 H 0.110 0.890 30 H 0.109 0.891 31 H 0.093 0.907 32 H 0.100 0.900 33 H 0.094 0.906 34 H 0.103 0.897 35 H 0.108 0.892 36 H 0.078 0.922 37 H 0.069 0.931 38 H 0.031 0.969 39 H 0.002 0.998 40 H 0.245 0.755 41 H 0.053 0.947 42 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.508 4.999 -14.211 15.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.029 4.029 3 N -0.319 5.319 4 C 0.302 3.698 5 O -0.467 6.467 6 C -0.140 4.140 7 C -0.178 4.178 8 C -0.217 4.217 9 C -0.200 4.200 10 C 0.028 3.972 11 H 0.117 0.883 12 C -0.182 4.182 13 C 0.063 3.937 14 N -0.336 5.336 15 C -0.353 4.353 16 H 0.096 0.904 17 C -0.247 4.247 18 N -0.596 5.596 19 Si 0.795 3.205 20 H -0.212 1.212 21 H -0.229 1.229 22 H -0.199 1.199 23 C -0.001 4.001 24 H 0.067 0.933 25 H 0.082 0.918 26 H 0.080 0.920 27 H 0.101 0.899 28 H 0.110 0.890 29 H 0.128 0.872 30 H 0.127 0.873 31 H 0.111 0.889 32 H 0.119 0.881 33 H 0.113 0.887 34 H 0.121 0.879 35 H 0.127 0.873 36 H 0.097 0.903 37 H 0.088 0.912 38 H 0.049 0.951 39 H 0.020 0.980 40 H 0.055 0.945 41 H 0.071 0.929 42 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -2.278 5.364 -14.113 15.268 hybrid contribution -0.328 -0.817 1.030 1.355 sum -2.606 4.548 -13.083 14.094 Atomic orbital electron populations 1.22085 0.95298 1.02102 1.01521 1.21907 0.95366 0.81330 1.04304 1.47928 1.63913 1.14612 1.05434 1.21189 0.77443 0.85183 0.86020 1.90610 1.46767 1.22069 1.87290 1.21312 1.03864 0.99383 0.89476 1.21969 1.01154 1.02375 0.92267 1.23111 0.95001 0.99524 1.04083 1.23080 1.02805 0.99855 0.94237 1.22034 0.94787 0.97017 0.83391 0.88254 1.23131 0.97065 0.98529 0.99503 1.20941 0.83639 0.93377 0.95745 1.44652 1.06117 1.14216 1.68647 1.19237 0.92557 0.92650 1.30876 0.90399 1.25401 0.97768 0.98823 1.02701 1.70158 1.15974 1.18395 1.55054 0.85260 0.78629 0.79280 0.77368 1.21227 1.22918 1.19879 1.22024 0.97068 0.87472 0.93553 0.93332 0.91768 0.91954 0.89933 0.88951 0.87200 0.87251 0.88861 0.88142 0.88726 0.87908 0.87348 0.90342 0.91217 0.95059 0.97976 0.94546 0.92858 0.95045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.59 9.99 71.98 0.72 -3.87 16 2 C 0.09 3.03 5.04 86.38 0.44 3.46 16 3 N -0.59 -19.43 2.52 -790.15 -1.99 -21.43 16 4 C 0.51 16.16 7.63 87.66 0.67 16.83 16 5 O -0.59 -22.25 15.00 -3.03 -0.05 -22.29 16 6 C -0.10 -2.32 4.65 29.85 0.14 -2.18 16 7 C -0.16 -3.53 5.41 -10.80 -0.06 -3.59 16 8 C -0.18 -3.31 10.18 30.60 0.31 -3.00 16 9 C -0.16 -2.63 10.25 30.59 0.31 -2.32 16 10 C 0.13 4.78 3.61 46.38 0.17 4.95 16 11 H 0.10 3.56 7.12 -2.39 -0.02 3.55 16 12 C -0.14 -5.36 6.56 31.79 0.21 -5.16 16 13 C 0.19 8.74 4.31 86.73 0.37 9.11 16 14 N -0.61 -28.61 2.19 -692.01 -1.51 -30.12 16 15 C -0.22 -11.53 10.27 84.03 0.86 -10.67 16 16 H 0.08 3.91 7.83 -2.91 -0.02 3.89 16 17 C -0.05 -2.84 5.48 84.86 0.47 -2.37 16 18 N -0.95 -53.41 10.35 21.65 0.22 -53.18 16 19 Si 0.96 43.46 29.56 68.60 2.03 45.49 16 20 H -0.29 -12.58 7.11 99.48 0.71 -11.87 16 21 H -0.30 -14.02 7.11 99.48 0.71 -13.31 16 22 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 23 C 0.12 4.92 6.05 86.85 0.53 5.44 16 24 H 0.05 1.70 5.63 -2.39 -0.01 1.69 16 25 H 0.06 1.56 6.32 -2.39 -0.02 1.54 16 26 H 0.06 1.85 8.14 -2.38 -0.02 1.83 16 27 H 0.08 2.23 6.71 -2.38 -0.02 2.21 16 28 H 0.09 3.84 3.73 -2.39 -0.01 3.83 16 29 H 0.11 2.18 7.28 -2.38 -0.02 2.16 16 30 H 0.11 2.18 6.09 -2.39 -0.01 2.17 16 31 H 0.09 2.52 7.31 -2.39 -0.02 2.51 16 32 H 0.10 1.68 8.03 -2.39 -0.02 1.66 16 33 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 34 H 0.10 1.46 8.14 -2.38 -0.02 1.45 16 35 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 36 H 0.08 2.74 8.14 -2.39 -0.02 2.72 16 37 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 38 H 0.03 1.60 5.69 -2.39 -0.01 1.59 16 39 H 0.00 0.11 7.63 -2.39 -0.02 0.09 16 40 H 0.25 13.65 8.31 -92.71 -0.77 12.88 16 41 H 0.05 2.06 6.00 -2.39 -0.01 2.05 16 42 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 Total: -1.00 -61.45 321.05 4.84 -56.61 By element: Atomic # 1 Polarization: 17.28 SS G_CDS: 1.01 Total: 18.28 kcal Atomic # 6 Polarization: 1.51 SS G_CDS: 5.13 Total: 6.64 kcal Atomic # 7 Polarization: -101.45 SS G_CDS: -3.28 Total: -104.73 kcal Atomic # 8 Polarization: -22.25 SS G_CDS: -0.05 Total: -22.29 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.49 kcal Total: -61.45 4.84 -56.61 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001665692045.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.656 kcal (2) G-P(sol) polarization free energy of solvation -61.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.612 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds