Wall clock time and date at job start Mon Mar 30 2020 00:47:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46501 * 109.47264 * 2 1 4 4 C 1.34774 * 120.00288 * 274.94794 * 3 2 1 5 5 O 1.21284 * 119.99864 * 185.19457 * 4 3 2 6 6 C 1.50695 * 120.00030 * 5.19290 * 4 3 2 7 7 C 1.53006 * 109.47262 * 180.02562 * 6 4 3 8 8 C 1.52997 * 117.49658 * 243.62232 * 7 6 4 9 9 C 1.52995 * 59.99956 * 252.50931 * 8 7 6 10 10 C 1.46506 * 119.99774 * 94.93906 * 3 2 1 11 11 H 1.08999 * 110.91595 * 177.61054 * 10 3 2 12 12 C 1.55151 * 111.00529 * 301.52176 * 10 3 2 13 13 C 1.54317 * 102.94571 * 82.56921 * 12 10 3 14 14 N 1.47024 * 107.27094 * 22.19295 * 13 12 10 15 15 C 1.36940 * 125.64832 * 181.02543 * 14 13 12 16 16 H 1.07996 * 119.99946 * 185.05361 * 15 14 13 17 17 C 1.38810 * 120.00030 * 4.77063 * 15 14 13 18 18 N 1.31617 * 120.00002 * 354.45992 * 17 15 14 19 19 Si 1.86801 * 119.99907 * 174.45299 * 17 15 14 20 20 H 1.48494 * 109.47265 * 94.99855 * 19 17 15 21 21 H 1.48503 * 109.47132 * 214.99913 * 19 17 15 22 22 H 1.48506 * 109.47076 * 334.99543 * 19 17 15 23 23 C 1.47425 * 108.70384 * 1.28505 * 14 13 12 24 24 H 1.08996 * 109.47016 * 186.94889 * 1 2 3 25 25 H 1.09002 * 109.46963 * 306.95138 * 1 2 3 26 26 H 1.08999 * 109.46836 * 66.94759 * 1 2 3 27 27 H 1.09004 * 109.46631 * 240.00396 * 2 1 3 28 28 H 1.08995 * 109.47458 * 120.00307 * 2 1 3 29 29 H 1.09005 * 109.47054 * 300.00241 * 6 4 3 30 30 H 1.09004 * 109.47475 * 60.00071 * 6 4 3 31 31 H 1.09005 * 115.54696 * 29.32736 * 7 6 4 32 32 H 1.09000 * 117.50322 * 359.97438 * 8 7 6 33 33 H 1.09003 * 117.49894 * 145.01786 * 8 7 6 34 34 H 1.08997 * 117.50074 * 252.51088 * 9 8 7 35 35 H 1.09001 * 117.51946 * 107.48414 * 9 8 7 36 36 H 1.08999 * 110.72284 * 324.20380 * 12 10 3 37 37 H 1.09001 * 110.71709 * 200.93528 * 12 10 3 38 38 H 1.09000 * 109.88414 * 262.77532 * 13 12 10 39 39 H 1.09000 * 110.01302 * 141.67742 * 13 12 10 40 40 H 0.97007 * 120.00181 * 180.02562 * 18 17 15 41 41 H 1.09001 * 110.36422 * 94.48228 * 23 14 13 42 42 H 1.08994 * 110.36808 * 216.80665 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1482 2.0502 -1.1628 5 8 2.6404 3.1586 -1.1731 6 6 1.6817 1.4209 -2.4502 7 6 1.9426 2.3822 -3.6116 8 6 0.7278 2.9158 -4.3734 9 6 1.6447 1.8792 -5.0255 10 6 2.3656 2.0354 1.2641 11 1 2.7501 3.0402 1.0895 12 6 1.1498 2.0646 2.2275 13 6 1.1879 0.6643 2.8748 14 7 2.5622 0.1592 2.7418 15 6 3.0089 -1.0617 3.1721 16 1 4.0579 -1.3085 3.1012 17 6 2.1144 -1.9797 3.7049 18 7 0.8579 -1.6386 3.8976 19 14 2.6939 -3.6994 4.1482 20 1 3.0512 -3.7454 5.5887 21 1 1.6065 -4.6736 3.8765 22 1 3.8847 -4.0463 3.3315 23 6 3.3811 1.1872 2.0739 24 1 -0.3633 -1.0201 0.1243 25 1 -0.3633 0.6178 0.8213 26 1 -0.3633 0.4024 -0.9456 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5138 0.8899 29 1 2.2263 0.4918 -2.6187 30 1 0.6143 1.2098 -2.3856 31 1 2.7921 3.0533 -3.4846 32 1 -0.2573 2.5818 -4.0474 33 1 0.7778 3.9384 -4.7477 34 1 2.2980 2.2196 -5.8288 35 1 1.2633 0.8633 -5.1284 36 1 0.2221 2.2082 1.6735 37 1 1.2740 2.8417 2.9817 38 1 0.4965 -0.0018 2.3586 39 1 0.9188 0.7331 3.9288 40 1 0.2328 -2.2800 4.2703 41 1 3.8909 1.8052 2.8131 42 1 4.1040 0.7206 1.4048 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001665692046.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:47:35 Heat of formation + Delta-G solvation = 20.290269 kcal Electronic energy + Delta-G solvation = -21570.795305 eV Core-core repulsion = 18552.690139 eV Total energy + Delta-G solvation = -3018.105165 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.00094 -37.90801 -36.73020 -34.55358 -32.42820 -30.27444 -29.62988 -28.94076 -26.82543 -24.48872 -22.87797 -22.42714 -21.55071 -20.08940 -19.96382 -18.40478 -17.02080 -16.92535 -16.07289 -15.35588 -14.77148 -14.68243 -14.14479 -13.89966 -13.74287 -13.42366 -12.89078 -12.78897 -12.20246 -12.05330 -11.90422 -11.84682 -11.58276 -11.38302 -11.13256 -10.95823 -10.90589 -10.70190 -10.48075 -10.37404 -10.16156 -10.14320 -9.99708 -9.91663 -9.68943 -9.24346 -8.65927 -8.15279 -6.84179 -5.78744 -3.12271 2.97753 3.35229 3.39666 3.42156 3.43050 3.79485 4.44354 4.64872 4.74770 4.88951 5.10853 5.33450 5.39818 5.42170 5.48133 5.53887 5.55389 5.59610 5.70797 5.73502 5.82766 5.85379 5.93268 5.98310 6.03829 6.21931 6.26710 6.31417 6.35793 6.51188 6.56267 6.63358 6.75609 6.85329 7.19976 7.51476 7.59386 7.78440 7.94574 8.18724 8.57900 9.15208 9.74693 10.40806 11.32076 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.028112 B = 0.005231 C = 0.004926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.791367 B = 5351.317983 C = 5682.414808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.081 3.919 3 N -0.585 5.585 4 C 0.514 3.486 5 O -0.556 6.556 6 C -0.110 4.110 7 C -0.136 4.136 8 C -0.179 4.179 9 C -0.183 4.183 10 C 0.123 3.877 11 H 0.098 0.902 12 C -0.158 4.158 13 C 0.166 3.834 14 N -0.602 5.602 15 C -0.233 4.233 16 H 0.077 0.923 17 C -0.003 4.003 18 N -0.917 5.917 19 Si 0.908 3.092 20 H -0.290 1.290 21 H -0.290 1.290 22 H -0.281 1.281 23 C 0.124 3.876 24 H 0.064 0.936 25 H 0.069 0.931 26 H 0.039 0.961 27 H 0.058 0.942 28 H 0.138 0.862 29 H 0.094 0.906 30 H 0.094 0.906 31 H 0.117 0.883 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.093 0.907 35 H 0.093 0.907 36 H 0.063 0.937 37 H 0.065 0.935 38 H 0.064 0.936 39 H 0.038 0.962 40 H 0.252 0.748 41 H 0.030 0.970 42 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.520 4.774 -12.373 13.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.041 4.041 3 N -0.316 5.316 4 C 0.302 3.698 5 O -0.436 6.436 6 C -0.150 4.150 7 C -0.155 4.155 8 C -0.216 4.216 9 C -0.220 4.220 10 C 0.019 3.981 11 H 0.116 0.884 12 C -0.197 4.197 13 C 0.042 3.958 14 N -0.329 5.329 15 C -0.361 4.361 16 H 0.095 0.905 17 C -0.200 4.200 18 N -0.564 5.564 19 Si 0.738 3.262 20 H -0.217 1.217 21 H -0.216 1.216 22 H -0.206 1.206 23 C -0.002 4.002 24 H 0.083 0.917 25 H 0.088 0.912 26 H 0.058 0.942 27 H 0.077 0.923 28 H 0.156 0.844 29 H 0.112 0.888 30 H 0.112 0.888 31 H 0.135 0.865 32 H 0.110 0.890 33 H 0.110 0.890 34 H 0.111 0.889 35 H 0.111 0.889 36 H 0.082 0.918 37 H 0.084 0.916 38 H 0.082 0.918 39 H 0.056 0.944 40 H 0.063 0.937 41 H 0.047 0.953 42 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -1.355 5.137 -12.259 13.361 hybrid contribution 0.121 -1.023 0.395 1.104 sum -1.234 4.114 -11.864 12.617 Atomic orbital electron populations 1.22306 0.96483 1.02615 1.01034 1.22115 0.94236 0.81930 1.05833 1.47839 1.63820 1.14423 1.05528 1.20515 0.78338 0.85618 0.85313 1.90619 1.45457 1.20589 1.86900 1.21298 1.02989 0.99051 0.91655 1.22080 1.00824 1.01665 0.90884 1.23006 0.95159 0.98887 1.04588 1.22982 1.03788 0.99286 0.95951 1.22229 0.96401 0.96672 0.82801 0.88442 1.23291 0.97319 1.00950 0.98131 1.21406 0.87141 0.88661 0.98600 1.44627 1.05737 1.14283 1.68260 1.19048 0.93188 0.88836 1.35001 0.90466 1.24776 0.95714 0.98335 1.01158 1.69976 1.02854 1.33948 1.49664 0.86164 0.77476 0.84344 0.78177 1.21725 1.21634 1.20628 1.21950 0.93273 0.91219 0.93806 0.91696 0.91245 0.94239 0.92313 0.84448 0.88758 0.88817 0.86532 0.88953 0.88951 0.88888 0.88854 0.91789 0.91609 0.91842 0.94412 0.93723 0.95265 0.93748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.60 9.10 37.16 0.34 -2.26 16 2 C 0.08 1.39 4.89 -4.04 -0.02 1.37 16 3 N -0.59 -10.14 2.53 -163.53 -0.41 -10.55 16 4 C 0.51 8.61 7.63 -10.99 -0.08 8.52 16 5 O -0.56 -10.87 14.95 5.55 0.08 -10.79 16 6 C -0.11 -1.42 4.66 -27.88 -0.13 -1.55 16 7 C -0.14 -1.66 5.41 -90.62 -0.49 -2.15 16 8 C -0.18 -1.88 10.18 -26.74 -0.27 -2.16 16 9 C -0.18 -1.78 10.25 -26.74 -0.27 -2.05 16 10 C 0.12 2.29 3.67 -65.66 -0.24 2.05 16 11 H 0.10 1.82 7.02 -51.93 -0.36 1.45 16 12 C -0.16 -2.95 5.99 -24.90 -0.15 -3.10 16 13 C 0.17 3.77 4.18 -3.07 -0.01 3.75 16 14 N -0.60 -14.31 1.88 -169.94 -0.32 -14.63 16 15 C -0.23 -6.08 9.84 -15.06 -0.15 -6.23 16 16 H 0.08 1.99 7.83 -52.49 -0.41 1.58 16 17 C 0.00 -0.08 5.48 -17.43 -0.10 -0.18 16 18 N -0.92 -25.18 10.34 55.49 0.57 -24.60 16 19 Si 0.91 21.08 29.56 -169.99 -5.02 16.06 16 20 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 21 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 22 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 23 C 0.12 2.55 6.51 -2.41 -0.02 2.54 16 24 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 25 H 0.07 1.19 4.70 -51.93 -0.24 0.94 16 26 H 0.04 0.52 6.36 -51.93 -0.33 0.19 16 27 H 0.06 0.87 6.70 -51.93 -0.35 0.53 16 28 H 0.14 2.90 4.39 -51.93 -0.23 2.67 16 29 H 0.09 1.11 7.28 -51.93 -0.38 0.73 16 30 H 0.09 1.11 6.10 -51.93 -0.32 0.79 16 31 H 0.12 1.63 7.31 -51.93 -0.38 1.25 16 32 H 0.09 0.92 8.03 -51.93 -0.42 0.50 16 33 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.06 1.13 6.71 -51.93 -0.35 0.78 16 37 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 38 H 0.06 1.51 4.40 -51.93 -0.23 1.28 16 39 H 0.04 0.97 7.61 -51.93 -0.40 0.58 16 40 H 0.25 6.80 8.31 -40.82 -0.34 6.46 16 41 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.04 0.92 8.14 -51.93 -0.42 0.49 16 LS Contribution 318.11 15.07 4.79 4.79 Total: -1.00 -28.59 318.11 -8.38 -36.98 By element: Atomic # 1 Polarization: 10.67 SS G_CDS: -6.48 Total: 4.19 kcal Atomic # 6 Polarization: 0.15 SS G_CDS: -1.59 Total: -1.45 kcal Atomic # 7 Polarization: -49.62 SS G_CDS: -0.16 Total: -49.78 kcal Atomic # 8 Polarization: -10.87 SS G_CDS: 0.08 Total: -10.79 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -28.59 -8.38 -36.98 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001665692046.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.267 kcal (2) G-P(sol) polarization free energy of solvation -28.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.976 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds