Wall clock time and date at job start Mon Mar 30 2020 00:47:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46501 * 109.47264 * 2 1 4 4 C 1.34774 * 120.00288 * 274.94794 * 3 2 1 5 5 O 1.21284 * 119.99864 * 185.19457 * 4 3 2 6 6 C 1.50695 * 120.00030 * 5.19290 * 4 3 2 7 7 C 1.53006 * 109.47262 * 180.02562 * 6 4 3 8 8 C 1.52997 * 117.49658 * 243.62232 * 7 6 4 9 9 C 1.52995 * 59.99956 * 252.50931 * 8 7 6 10 10 C 1.46506 * 119.99774 * 94.93906 * 3 2 1 11 11 H 1.08999 * 110.91595 * 177.61054 * 10 3 2 12 12 C 1.55151 * 111.00529 * 301.52176 * 10 3 2 13 13 C 1.54317 * 102.94571 * 82.56921 * 12 10 3 14 14 N 1.47024 * 107.27094 * 22.19295 * 13 12 10 15 15 C 1.36940 * 125.64832 * 181.02543 * 14 13 12 16 16 H 1.07996 * 119.99946 * 185.05361 * 15 14 13 17 17 C 1.38810 * 120.00030 * 4.77063 * 15 14 13 18 18 N 1.31617 * 120.00002 * 354.45992 * 17 15 14 19 19 Si 1.86801 * 119.99907 * 174.45299 * 17 15 14 20 20 H 1.48494 * 109.47265 * 94.99855 * 19 17 15 21 21 H 1.48503 * 109.47132 * 214.99913 * 19 17 15 22 22 H 1.48506 * 109.47076 * 334.99543 * 19 17 15 23 23 C 1.47425 * 108.70384 * 1.28505 * 14 13 12 24 24 H 1.08996 * 109.47016 * 186.94889 * 1 2 3 25 25 H 1.09002 * 109.46963 * 306.95138 * 1 2 3 26 26 H 1.08999 * 109.46836 * 66.94759 * 1 2 3 27 27 H 1.09004 * 109.46631 * 240.00396 * 2 1 3 28 28 H 1.08995 * 109.47458 * 120.00307 * 2 1 3 29 29 H 1.09005 * 109.47054 * 300.00241 * 6 4 3 30 30 H 1.09004 * 109.47475 * 60.00071 * 6 4 3 31 31 H 1.09005 * 115.54696 * 29.32736 * 7 6 4 32 32 H 1.09000 * 117.50322 * 359.97438 * 8 7 6 33 33 H 1.09003 * 117.49894 * 145.01786 * 8 7 6 34 34 H 1.08997 * 117.50074 * 252.51088 * 9 8 7 35 35 H 1.09001 * 117.51946 * 107.48414 * 9 8 7 36 36 H 1.08999 * 110.72284 * 324.20380 * 12 10 3 37 37 H 1.09001 * 110.71709 * 200.93528 * 12 10 3 38 38 H 1.09000 * 109.88414 * 262.77532 * 13 12 10 39 39 H 1.09000 * 110.01302 * 141.67742 * 13 12 10 40 40 H 0.97007 * 120.00181 * 180.02562 * 18 17 15 41 41 H 1.09001 * 110.36422 * 94.48228 * 23 14 13 42 42 H 1.08994 * 110.36808 * 216.80665 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1482 2.0502 -1.1628 5 8 2.6404 3.1586 -1.1731 6 6 1.6817 1.4209 -2.4502 7 6 1.9426 2.3822 -3.6116 8 6 0.7278 2.9158 -4.3734 9 6 1.6447 1.8792 -5.0255 10 6 2.3656 2.0354 1.2641 11 1 2.7501 3.0402 1.0895 12 6 1.1498 2.0646 2.2275 13 6 1.1879 0.6643 2.8748 14 7 2.5622 0.1592 2.7418 15 6 3.0089 -1.0617 3.1721 16 1 4.0579 -1.3085 3.1012 17 6 2.1144 -1.9797 3.7049 18 7 0.8579 -1.6386 3.8976 19 14 2.6939 -3.6994 4.1482 20 1 3.0512 -3.7454 5.5887 21 1 1.6065 -4.6736 3.8765 22 1 3.8847 -4.0463 3.3315 23 6 3.3811 1.1872 2.0739 24 1 -0.3633 -1.0201 0.1243 25 1 -0.3633 0.6178 0.8213 26 1 -0.3633 0.4024 -0.9456 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5138 0.8899 29 1 2.2263 0.4918 -2.6187 30 1 0.6143 1.2098 -2.3856 31 1 2.7921 3.0533 -3.4846 32 1 -0.2573 2.5818 -4.0474 33 1 0.7778 3.9384 -4.7477 34 1 2.2980 2.2196 -5.8288 35 1 1.2633 0.8633 -5.1284 36 1 0.2221 2.2082 1.6735 37 1 1.2740 2.8417 2.9817 38 1 0.4965 -0.0018 2.3586 39 1 0.9188 0.7331 3.9288 40 1 0.2328 -2.2800 4.2703 41 1 3.8909 1.8052 2.8131 42 1 4.1040 0.7206 1.4048 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001665692046.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:47:34 Heat of formation + Delta-G solvation = 5.825187 kcal Electronic energy + Delta-G solvation = -21571.422558 eV Core-core repulsion = 18552.690139 eV Total energy + Delta-G solvation = -3018.732419 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.39161 -39.30717 -37.79866 -36.10871 -34.23378 -31.79277 -31.14698 -30.26892 -28.44285 -26.36893 -24.18918 -23.18994 -22.84710 -21.91130 -21.11547 -19.77443 -18.86029 -18.33153 -17.32595 -16.66933 -16.59136 -15.98252 -15.64075 -15.37542 -14.97293 -14.71399 -14.23345 -14.15271 -13.76837 -13.68566 -13.45644 -13.23786 -12.91766 -12.78586 -12.54648 -12.34157 -12.28889 -12.09943 -12.05959 -11.98412 -11.79758 -11.60913 -11.49510 -11.23097 -10.90533 -10.63568 -10.56312 -9.62478 -8.75743 -7.80688 -5.15055 1.49815 1.51398 1.59720 1.67612 2.07485 2.52539 2.95604 3.38483 3.56266 3.69581 3.82374 3.92810 4.02093 4.08823 4.17485 4.20864 4.33442 4.44887 4.56629 4.64565 4.67421 4.72447 4.74049 4.81079 4.83612 4.89225 4.99019 5.02683 5.06627 5.07628 5.30927 5.34371 5.38340 5.46175 5.51812 5.71412 5.76198 5.87643 6.24092 6.59982 7.15012 7.24629 7.79642 8.45072 9.28670 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.028112 B = 0.005231 C = 0.004926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.791367 B = 5351.317983 C = 5682.414808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.086 3.914 3 N -0.587 5.587 4 C 0.511 3.489 5 O -0.587 6.587 6 C -0.101 4.101 7 C -0.159 4.159 8 C -0.180 4.180 9 C -0.163 4.163 10 C 0.133 3.867 11 H 0.101 0.899 12 C -0.144 4.144 13 C 0.178 3.822 14 N -0.613 5.613 15 C -0.242 4.242 16 H 0.076 0.924 17 C -0.049 4.049 18 N -0.940 5.940 19 Si 0.968 3.032 20 H -0.295 1.295 21 H -0.292 1.292 22 H -0.271 1.271 23 C 0.125 3.875 24 H 0.060 0.940 25 H 0.050 0.950 26 H 0.069 0.931 27 H 0.084 0.916 28 H 0.098 0.902 29 H 0.110 0.890 30 H 0.111 0.889 31 H 0.093 0.907 32 H 0.101 0.899 33 H 0.094 0.906 34 H 0.102 0.898 35 H 0.108 0.892 36 H 0.077 0.923 37 H 0.076 0.924 38 H 0.052 0.948 39 H -0.002 1.002 40 H 0.247 0.753 41 H 0.032 0.968 42 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.772 4.479 -14.385 15.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.037 4.037 3 N -0.318 5.318 4 C 0.302 3.698 5 O -0.468 6.468 6 C -0.140 4.140 7 C -0.178 4.178 8 C -0.217 4.217 9 C -0.200 4.200 10 C 0.028 3.972 11 H 0.119 0.881 12 C -0.183 4.183 13 C 0.054 3.946 14 N -0.340 5.340 15 C -0.370 4.370 16 H 0.094 0.906 17 C -0.243 4.243 18 N -0.589 5.589 19 Si 0.797 3.203 20 H -0.222 1.222 21 H -0.219 1.219 22 H -0.196 1.196 23 C -0.002 4.002 24 H 0.079 0.921 25 H 0.069 0.931 26 H 0.087 0.913 27 H 0.102 0.898 28 H 0.116 0.884 29 H 0.128 0.872 30 H 0.129 0.871 31 H 0.111 0.889 32 H 0.119 0.881 33 H 0.113 0.887 34 H 0.121 0.879 35 H 0.127 0.873 36 H 0.096 0.904 37 H 0.095 0.905 38 H 0.070 0.930 39 H 0.016 0.984 40 H 0.056 0.944 41 H 0.050 0.950 42 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -1.591 4.850 -14.291 15.175 hybrid contribution 0.252 -0.887 1.013 1.370 sum -1.339 3.963 -13.278 13.921 Atomic orbital electron populations 1.22203 0.95324 1.02238 1.01861 1.21991 0.95135 0.81455 1.05085 1.47890 1.63924 1.14598 1.05358 1.21208 0.77397 0.85196 0.86043 1.90608 1.46784 1.22093 1.87345 1.21308 1.03923 0.99356 0.89411 1.21970 1.01206 1.02398 0.92235 1.23110 0.95012 0.99512 1.04021 1.23078 1.02811 0.99864 0.94243 1.22041 0.95452 0.96415 0.83329 0.88115 1.23158 0.98145 0.98669 0.98290 1.21172 0.86539 0.90661 0.96275 1.44755 1.06562 1.14332 1.68343 1.19306 0.93260 0.89958 1.34498 0.90568 1.25429 0.95905 1.01348 1.01651 1.70153 1.03642 1.34541 1.50530 0.85225 0.77143 0.80440 0.77454 1.22209 1.21861 1.19588 1.22017 0.93489 0.90776 0.93870 0.92064 0.93073 0.91257 0.89811 0.88376 0.87242 0.87138 0.88912 0.88073 0.88741 0.87941 0.87325 0.90425 0.90512 0.93015 0.98408 0.94353 0.94986 0.94039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.66 9.10 71.98 0.66 -4.01 16 2 C 0.09 2.80 4.89 86.38 0.42 3.22 16 3 N -0.59 -19.53 2.53 -789.69 -2.00 -21.53 16 4 C 0.51 16.24 7.63 87.66 0.67 16.91 16 5 O -0.59 -22.40 14.95 -3.04 -0.05 -22.45 16 6 C -0.10 -2.31 4.66 29.85 0.14 -2.17 16 7 C -0.16 -3.55 5.41 -10.79 -0.06 -3.61 16 8 C -0.18 -3.28 10.18 30.59 0.31 -2.97 16 9 C -0.16 -2.63 10.25 30.59 0.31 -2.32 16 10 C 0.13 4.83 3.67 46.46 0.17 5.00 16 11 H 0.10 3.66 7.02 -2.39 -0.02 3.64 16 12 C -0.14 -5.29 5.99 31.78 0.19 -5.10 16 13 C 0.18 8.22 4.18 86.73 0.36 8.58 16 14 N -0.61 -29.52 1.88 -691.56 -1.30 -30.82 16 15 C -0.24 -12.76 9.84 84.03 0.83 -11.93 16 16 H 0.08 3.94 7.83 -2.91 -0.02 3.92 16 17 C -0.05 -2.62 5.48 84.86 0.47 -2.16 16 18 N -0.94 -52.66 10.34 21.65 0.22 -52.43 16 19 Si 0.97 43.60 29.56 68.60 2.03 45.63 16 20 H -0.29 -13.41 7.11 99.48 0.71 -12.71 16 21 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16 22 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 23 C 0.12 5.11 6.51 86.93 0.57 5.68 16 24 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 25 H 0.05 1.69 4.70 -2.39 -0.01 1.68 16 26 H 0.07 1.60 6.36 -2.39 -0.02 1.59 16 27 H 0.08 2.28 6.70 -2.38 -0.02 2.26 16 28 H 0.10 4.12 4.39 -2.39 -0.01 4.11 16 29 H 0.11 2.19 7.28 -2.38 -0.02 2.17 16 30 H 0.11 2.17 6.10 -2.38 -0.01 2.16 16 31 H 0.09 2.52 7.31 -2.38 -0.02 2.51 16 32 H 0.10 1.67 8.03 -2.39 -0.02 1.65 16 33 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 34 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 35 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 36 H 0.08 2.66 6.71 -2.39 -0.02 2.64 16 37 H 0.08 2.65 8.14 -2.39 -0.02 2.63 16 38 H 0.05 2.51 4.40 -2.39 -0.01 2.50 16 39 H 0.00 -0.13 7.61 -2.39 -0.02 -0.14 16 40 H 0.25 13.58 8.31 -92.70 -0.77 12.81 16 41 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 42 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 Total: -1.00 -62.10 318.11 4.95 -57.15 By element: Atomic # 1 Polarization: 18.32 SS G_CDS: 1.01 Total: 19.33 kcal Atomic # 6 Polarization: 0.09 SS G_CDS: 5.03 Total: 5.13 kcal Atomic # 7 Polarization: -101.71 SS G_CDS: -3.07 Total: -104.79 kcal Atomic # 8 Polarization: -22.40 SS G_CDS: -0.05 Total: -22.45 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.63 kcal Total: -62.10 4.95 -57.15 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001665692046.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.974 kcal (2) G-P(sol) polarization free energy of solvation -62.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.149 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds