Wall clock time and date at job start Mon Mar 30 2020 01:32:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36933 * 119.99964 * 2 1 4 4 H 1.07999 * 119.99763 * 204.84457 * 3 2 1 5 5 C 1.38807 * 120.00101 * 24.85123 * 3 2 1 6 6 N 1.31621 * 120.00082 * 5.86169 * 5 3 2 7 7 Si 1.86808 * 120.00093 * 185.86104 * 5 3 2 8 8 H 1.48500 * 109.46910 * 359.97438 * 7 5 3 9 9 H 1.48499 * 109.46646 * 119.99849 * 7 5 3 10 10 H 1.48499 * 109.47193 * 239.99786 * 7 5 3 11 11 C 1.46499 * 119.99894 * 180.02562 * 2 1 3 12 12 C 1.53006 * 109.46877 * 270.00224 * 11 2 1 13 13 N 1.46499 * 109.46877 * 179.97438 * 12 11 2 14 14 C 1.46497 * 120.00054 * 270.26934 * 13 12 11 15 15 C 1.34785 * 120.00311 * 89.99887 * 13 12 11 16 16 O 1.21287 * 119.99560 * 354.43357 * 15 13 12 17 17 C 1.50694 * 120.00349 * 174.43017 * 15 13 12 18 18 H 1.09001 * 110.66959 * 337.86715 * 17 15 13 19 19 C 1.54889 * 110.75540 * 101.30120 * 17 15 13 20 20 C 1.54262 * 104.19818 * 156.25980 * 19 17 15 21 21 H 1.09001 * 117.41639 * 116.36503 * 20 19 17 22 22 C 1.55473 * 118.30044 * 272.80483 * 20 19 17 23 23 C 1.53007 * 59.84025 * 93.29286 * 22 20 19 24 24 H 1.08998 * 119.30081 * 111.71351 * 23 22 20 25 25 C 1.54268 * 118.19609 * 265.85500 * 23 22 20 26 26 H 1.09001 * 109.47378 * 275.02176 * 1 2 3 27 27 H 1.08996 * 109.46965 * 35.01983 * 1 2 3 28 28 H 1.09004 * 109.47460 * 155.02156 * 1 2 3 29 29 H 0.96999 * 119.99972 * 180.02562 * 6 5 3 30 30 H 1.08997 * 109.47207 * 150.00021 * 11 2 1 31 31 H 1.09006 * 109.47333 * 29.99277 * 11 2 1 32 32 H 1.08997 * 109.47368 * 59.99896 * 12 11 2 33 33 H 1.09000 * 109.46681 * 299.99391 * 12 11 2 34 34 H 1.09001 * 109.47191 * 274.32090 * 14 13 12 35 35 H 1.08995 * 109.46973 * 34.32263 * 14 13 12 36 36 H 1.09006 * 109.47146 * 154.32229 * 14 13 12 37 37 H 1.09001 * 110.48588 * 274.93911 * 19 17 15 38 38 H 1.08999 * 110.48501 * 37.58127 * 19 17 15 39 39 H 1.08999 * 118.05928 * 346.15798 * 22 20 19 40 40 H 1.08998 * 117.18468 * 200.81314 * 22 20 19 41 41 H 1.09001 * 110.48417 * 330.31907 * 25 23 22 42 42 H 1.09006 * 110.48558 * 207.67886 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1547 1.2291 -0.3930 5 6 1.5521 2.3323 0.5052 6 7 0.3745 2.2582 1.0886 7 14 2.4190 3.9804 0.3571 8 1 3.7201 3.7949 -0.3341 9 1 1.5718 4.9168 -0.4244 10 1 2.6543 4.5395 1.7125 11 6 2.1975 -1.2687 -0.0006 12 6 2.4524 -1.7110 1.4418 13 7 3.1843 -2.9801 1.4412 14 6 2.4513 -4.2485 1.4349 15 6 4.5322 -2.9807 1.4411 16 8 5.1390 -1.9355 1.3395 17 6 5.2851 -4.2800 1.5672 18 1 4.6591 -5.0444 2.0276 19 6 5.8050 -4.7494 0.1857 20 6 7.0008 -5.6641 0.5223 21 1 6.9223 -6.7153 0.2449 22 6 8.4011 -5.0119 0.6978 23 6 7.5011 -5.2392 1.9141 24 1 7.7911 -5.9772 2.6618 25 6 6.5918 -4.0811 2.3745 26 1 -0.3634 0.0900 1.0237 27 1 -0.3633 0.8416 -0.5897 28 1 -0.3634 -0.9316 -0.4340 29 1 -0.0432 3.0595 1.4413 30 1 3.1499 -1.1382 -0.5143 31 1 1.6083 -2.0282 -0.5146 32 1 1.5000 -1.8416 1.9556 33 1 3.0416 -0.9516 1.9559 34 1 2.1984 -4.5271 2.4578 35 1 1.5371 -4.1367 0.8521 36 1 3.0732 -5.0253 0.9899 37 1 5.0331 -5.3094 -0.3422 38 1 6.1326 -3.8964 -0.4085 39 1 8.5351 -3.9854 0.3564 40 1 9.2700 -5.6607 0.5873 41 1 7.0465 -3.1202 2.1338 42 1 6.3942 -4.1534 3.4441 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001667612037.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:38 Heat of formation + Delta-G solvation = 16.141608 kcal Electronic energy + Delta-G solvation = -20745.615688 eV Core-core repulsion = 17727.330624 eV Total energy + Delta-G solvation = -3018.285065 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.34147 -38.43492 -35.96529 -34.80423 -32.13483 -31.18053 -28.57091 -28.36782 -26.38989 -25.81424 -24.39638 -22.61012 -20.96297 -20.31851 -19.81522 -18.52546 -17.07295 -16.69143 -16.36077 -15.62286 -15.11108 -14.50785 -14.08061 -13.57878 -13.49747 -13.29504 -13.10859 -12.88741 -12.82860 -12.42928 -12.34034 -11.83648 -11.59110 -11.44187 -11.29672 -11.15800 -11.09398 -10.81300 -10.78280 -10.46486 -10.15928 -10.07211 -9.90063 -9.84332 -9.70704 -9.32048 -8.55392 -8.31068 -6.66828 -5.66561 -3.14354 2.83034 3.31018 3.44202 3.50574 3.51169 3.54671 4.29194 4.51288 4.57772 4.63530 4.91835 4.97582 5.05533 5.18898 5.25560 5.35103 5.38316 5.46050 5.52840 5.61904 5.64418 5.70539 5.74154 5.79004 5.89621 5.97036 6.01279 6.09713 6.25284 6.29847 6.34375 6.69524 6.77630 6.82994 7.11352 7.43927 7.75576 7.78714 7.90537 8.47341 8.54351 9.31786 9.92487 10.41355 11.38515 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.026886 B = 0.004378 C = 0.003981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.175656 B = 6394.349215 C = 7031.131700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.165 3.835 2 N -0.601 5.601 3 C -0.249 4.249 4 H 0.070 0.930 5 C 0.002 3.998 6 N -0.913 5.913 7 Si 0.905 3.095 8 H -0.277 1.277 9 H -0.290 1.290 10 H -0.290 1.290 11 C 0.145 3.855 12 C 0.094 3.906 13 N -0.614 5.614 14 C 0.078 3.922 15 C 0.513 3.487 16 O -0.531 6.531 17 C -0.113 4.113 18 H 0.094 0.906 19 C -0.080 4.080 20 C -0.167 4.167 21 H 0.112 0.888 22 C -0.154 4.154 23 C -0.162 4.162 24 H 0.108 0.892 25 C -0.083 4.083 26 H 0.029 0.971 27 H 0.045 0.955 28 H -0.006 1.006 29 H 0.251 0.749 30 H 0.046 0.954 31 H 0.033 0.967 32 H 0.066 0.934 33 H 0.083 0.917 34 H 0.052 0.948 35 H 0.071 0.929 36 H 0.068 0.932 37 H 0.074 0.926 38 H 0.077 0.923 39 H 0.096 0.904 40 H 0.096 0.904 41 H 0.085 0.915 42 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.587 -19.137 1.111 21.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.324 5.324 3 C -0.379 4.379 4 H 0.087 0.913 5 C -0.196 4.196 6 N -0.558 5.558 7 Si 0.735 3.265 8 H -0.202 1.202 9 H -0.217 1.217 10 H -0.216 1.216 11 C 0.016 3.984 12 C -0.030 4.030 13 N -0.348 5.348 14 C -0.065 4.065 15 C 0.300 3.700 16 O -0.407 6.407 17 C -0.135 4.135 18 H 0.113 0.887 19 C -0.118 4.118 20 C -0.185 4.185 21 H 0.130 0.870 22 C -0.191 4.191 23 C -0.180 4.180 24 H 0.126 0.874 25 C -0.120 4.120 26 H 0.047 0.953 27 H 0.064 0.936 28 H 0.012 0.988 29 H 0.061 0.939 30 H 0.065 0.935 31 H 0.052 0.948 32 H 0.084 0.916 33 H 0.101 0.899 34 H 0.070 0.930 35 H 0.090 0.910 36 H 0.087 0.913 37 H 0.092 0.908 38 H 0.095 0.905 39 H 0.114 0.886 40 H 0.115 0.885 41 H 0.104 0.896 42 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 8.751 -18.408 1.115 20.413 hybrid contribution 0.192 0.753 0.204 0.804 sum 8.943 -17.655 1.319 19.835 Atomic orbital electron populations 1.20838 0.82412 0.95344 0.99397 1.43947 1.01933 1.00627 1.85887 1.19315 0.99204 0.85814 1.33519 0.91270 1.25100 0.97371 0.98749 0.98344 1.70057 1.16206 1.27395 1.42178 0.86155 0.79043 0.83960 0.77313 1.20224 1.21695 1.21649 1.21103 0.95990 0.88078 0.93200 1.22578 0.95407 0.83213 1.01834 1.48116 1.05716 1.07820 1.73138 1.21770 0.97499 0.85802 1.01472 1.20427 0.82202 0.90695 0.76644 1.90727 1.67576 1.33611 1.48761 1.22514 0.97321 0.95693 0.97970 0.88733 1.21843 0.95968 0.98876 0.95140 1.23586 0.94015 0.99469 1.01449 0.87032 1.23465 0.92756 1.02006 1.00869 1.23233 1.02549 1.00897 0.91294 0.87359 1.21886 0.92542 0.98522 0.99089 0.95263 0.93599 0.98771 0.93883 0.93519 0.94823 0.91552 0.89878 0.92987 0.91027 0.91311 0.90755 0.90461 0.88574 0.88511 0.89606 0.91080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.14 9.00 59.85 0.54 4.68 16 2 N -0.60 -15.81 2.92 -181.12 -0.53 -16.34 16 3 C -0.25 -7.21 9.66 -15.06 -0.15 -7.36 16 4 H 0.07 2.03 7.83 -52.49 -0.41 1.62 16 5 C 0.00 0.06 5.23 -17.43 -0.09 -0.03 16 6 N -0.91 -27.18 10.46 55.49 0.58 -26.60 16 7 Si 0.91 22.86 29.56 -169.99 -5.02 17.84 16 8 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 9 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 10 H -0.29 -7.35 7.11 56.52 0.40 -6.94 16 11 C 0.14 3.18 6.03 -4.04 -0.02 3.16 16 12 C 0.09 1.88 5.71 -4.04 -0.02 1.86 16 13 N -0.61 -9.77 2.87 -181.57 -0.52 -10.30 16 14 C 0.08 0.86 9.88 59.85 0.59 1.45 16 15 C 0.51 8.50 6.73 -10.98 -0.07 8.43 16 16 O -0.53 -11.29 15.67 5.55 0.09 -11.21 16 17 C -0.11 -1.35 2.35 -89.79 -0.21 -1.56 16 18 H 0.09 0.92 6.48 -51.93 -0.34 0.59 16 19 C -0.08 -0.87 6.06 -25.07 -0.15 -1.02 16 20 C -0.17 -1.53 7.04 -88.19 -0.62 -2.15 16 21 H 0.11 0.85 8.14 -51.93 -0.42 0.43 16 22 C -0.15 -1.42 10.21 -25.41 -0.26 -1.68 16 23 C -0.16 -1.53 6.85 -89.49 -0.61 -2.14 16 24 H 0.11 0.87 8.14 -51.93 -0.42 0.45 16 25 C -0.08 -0.97 5.99 -25.07 -0.15 -1.12 16 26 H 0.03 0.78 7.34 -51.93 -0.38 0.40 16 27 H 0.05 1.24 7.26 -51.93 -0.38 0.86 16 28 H -0.01 -0.14 7.84 -51.93 -0.41 -0.54 16 29 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 30 H 0.05 1.10 8.04 -51.93 -0.42 0.68 16 31 H 0.03 0.66 7.86 -51.93 -0.41 0.25 16 32 H 0.07 1.29 8.07 -51.93 -0.42 0.87 16 33 H 0.08 1.98 7.51 -51.93 -0.39 1.59 16 34 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.07 0.76 8.10 -51.93 -0.42 0.34 16 36 H 0.07 0.59 6.34 -51.93 -0.33 0.26 16 37 H 0.07 0.68 8.09 -51.93 -0.42 0.26 16 38 H 0.08 1.00 8.04 -51.93 -0.42 0.58 16 39 H 0.10 0.99 8.14 -51.93 -0.42 0.56 16 40 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.09 1.21 7.30 -51.93 -0.38 0.83 16 42 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 336.83 15.07 5.08 5.08 Total: -1.00 -32.93 336.83 -8.75 -41.69 By element: Atomic # 1 Polarization: 4.51 SS G_CDS: -7.19 Total: -2.68 kcal Atomic # 6 Polarization: 3.75 SS G_CDS: -1.24 Total: 2.51 kcal Atomic # 7 Polarization: -52.76 SS G_CDS: -0.47 Total: -53.23 kcal Atomic # 8 Polarization: -11.29 SS G_CDS: 0.09 Total: -11.21 kcal Atomic # 14 Polarization: 22.86 SS G_CDS: -5.02 Total: 17.84 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -32.93 -8.75 -41.69 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667612037.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.828 kcal (2) G-P(sol) polarization free energy of solvation -32.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.687 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds