Wall clock time and date at job start Mon Mar 30 2020 01:32:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36933 * 119.99964 * 2 1 4 4 H 1.07999 * 119.99763 * 204.84457 * 3 2 1 5 5 C 1.38807 * 120.00101 * 24.85123 * 3 2 1 6 6 N 1.31621 * 120.00082 * 5.86169 * 5 3 2 7 7 Si 1.86808 * 120.00093 * 185.86104 * 5 3 2 8 8 H 1.48500 * 109.46910 * 359.97438 * 7 5 3 9 9 H 1.48499 * 109.46646 * 119.99849 * 7 5 3 10 10 H 1.48499 * 109.47193 * 239.99786 * 7 5 3 11 11 C 1.46499 * 119.99894 * 180.02562 * 2 1 3 12 12 C 1.53006 * 109.46877 * 270.00224 * 11 2 1 13 13 N 1.46499 * 109.46877 * 179.97438 * 12 11 2 14 14 C 1.46497 * 120.00054 * 270.26934 * 13 12 11 15 15 C 1.34785 * 120.00311 * 89.99887 * 13 12 11 16 16 O 1.21287 * 119.99560 * 354.43357 * 15 13 12 17 17 C 1.50694 * 120.00349 * 174.43017 * 15 13 12 18 18 H 1.09001 * 110.66959 * 337.86715 * 17 15 13 19 19 C 1.54889 * 110.75540 * 101.30120 * 17 15 13 20 20 C 1.54262 * 104.19818 * 156.25980 * 19 17 15 21 21 H 1.09001 * 117.41639 * 116.36503 * 20 19 17 22 22 C 1.55473 * 118.30044 * 272.80483 * 20 19 17 23 23 C 1.53007 * 59.84025 * 93.29286 * 22 20 19 24 24 H 1.08998 * 119.30081 * 111.71351 * 23 22 20 25 25 C 1.54268 * 118.19609 * 265.85500 * 23 22 20 26 26 H 1.09001 * 109.47378 * 275.02176 * 1 2 3 27 27 H 1.08996 * 109.46965 * 35.01983 * 1 2 3 28 28 H 1.09004 * 109.47460 * 155.02156 * 1 2 3 29 29 H 0.96999 * 119.99972 * 180.02562 * 6 5 3 30 30 H 1.08997 * 109.47207 * 150.00021 * 11 2 1 31 31 H 1.09006 * 109.47333 * 29.99277 * 11 2 1 32 32 H 1.08997 * 109.47368 * 59.99896 * 12 11 2 33 33 H 1.09000 * 109.46681 * 299.99391 * 12 11 2 34 34 H 1.09001 * 109.47191 * 274.32090 * 14 13 12 35 35 H 1.08995 * 109.46973 * 34.32263 * 14 13 12 36 36 H 1.09006 * 109.47146 * 154.32229 * 14 13 12 37 37 H 1.09001 * 110.48588 * 274.93911 * 19 17 15 38 38 H 1.08999 * 110.48501 * 37.58127 * 19 17 15 39 39 H 1.08999 * 118.05928 * 346.15798 * 22 20 19 40 40 H 1.08998 * 117.18468 * 200.81314 * 22 20 19 41 41 H 1.09001 * 110.48417 * 330.31907 * 25 23 22 42 42 H 1.09006 * 110.48558 * 207.67886 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1547 1.2291 -0.3930 5 6 1.5521 2.3323 0.5052 6 7 0.3745 2.2582 1.0886 7 14 2.4190 3.9804 0.3571 8 1 3.7201 3.7949 -0.3341 9 1 1.5718 4.9168 -0.4244 10 1 2.6543 4.5395 1.7125 11 6 2.1975 -1.2687 -0.0006 12 6 2.4524 -1.7110 1.4418 13 7 3.1843 -2.9801 1.4412 14 6 2.4513 -4.2485 1.4349 15 6 4.5322 -2.9807 1.4411 16 8 5.1390 -1.9355 1.3395 17 6 5.2851 -4.2800 1.5672 18 1 4.6591 -5.0444 2.0276 19 6 5.8050 -4.7494 0.1857 20 6 7.0008 -5.6641 0.5223 21 1 6.9223 -6.7153 0.2449 22 6 8.4011 -5.0119 0.6978 23 6 7.5011 -5.2392 1.9141 24 1 7.7911 -5.9772 2.6618 25 6 6.5918 -4.0811 2.3745 26 1 -0.3634 0.0900 1.0237 27 1 -0.3633 0.8416 -0.5897 28 1 -0.3634 -0.9316 -0.4340 29 1 -0.0432 3.0595 1.4413 30 1 3.1499 -1.1382 -0.5143 31 1 1.6083 -2.0282 -0.5146 32 1 1.5000 -1.8416 1.9556 33 1 3.0416 -0.9516 1.9559 34 1 2.1984 -4.5271 2.4578 35 1 1.5371 -4.1367 0.8521 36 1 3.0732 -5.0253 0.9899 37 1 5.0331 -5.3094 -0.3422 38 1 6.1326 -3.8964 -0.4085 39 1 8.5351 -3.9854 0.3564 40 1 9.2700 -5.6607 0.5873 41 1 7.0465 -3.1202 2.1338 42 1 6.3942 -4.1534 3.4441 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001667612037.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:38 Heat of formation + Delta-G solvation = -3.529471 kcal Electronic energy + Delta-G solvation = -20746.468690 eV Core-core repulsion = 17727.330624 eV Total energy + Delta-G solvation = -3019.138067 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.46439 -39.49975 -37.78179 -36.39584 -33.65365 -32.74146 -30.18109 -29.25605 -27.95605 -27.51267 -25.91038 -23.95580 -22.41029 -21.63019 -20.59005 -19.75777 -18.85426 -18.23247 -17.28409 -17.04687 -16.77392 -16.11567 -15.63851 -15.18830 -15.03778 -14.46259 -14.21150 -14.14321 -14.02384 -13.87804 -13.83156 -13.13655 -13.05206 -12.84790 -12.75244 -12.51693 -12.44334 -12.27032 -12.10984 -12.08604 -12.05637 -11.95283 -11.61704 -10.90288 -10.76681 -10.71831 -10.51313 -9.75647 -8.77014 -7.88379 -5.38765 1.40145 1.41980 1.52936 1.58266 2.04626 2.47572 2.71703 3.26138 3.36759 3.72125 3.75253 3.81037 3.93606 4.18137 4.21142 4.25083 4.36388 4.44678 4.45209 4.50042 4.59211 4.59642 4.72564 4.77077 4.83647 4.89561 4.93516 4.96341 5.01928 5.11561 5.15442 5.18047 5.32971 5.35886 5.42838 5.55699 5.62843 5.72592 6.30092 6.49504 7.12560 7.23906 7.81777 8.23268 9.14365 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.026886 B = 0.004378 C = 0.003981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.175656 B = 6394.349215 C = 7031.131700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.178 3.822 2 N -0.618 5.618 3 C -0.265 4.265 4 H 0.054 0.946 5 C -0.045 4.045 6 N -0.934 5.934 7 Si 0.966 3.034 8 H -0.276 1.276 9 H -0.281 1.281 10 H -0.289 1.289 11 C 0.150 3.850 12 C 0.112 3.888 13 N -0.613 5.613 14 C 0.069 3.931 15 C 0.505 3.495 16 O -0.592 6.592 17 C -0.102 4.102 18 H 0.130 0.870 19 C -0.082 4.082 20 C -0.156 4.156 21 H 0.141 0.859 22 C -0.164 4.164 23 C -0.158 4.158 24 H 0.133 0.867 25 C -0.089 4.089 26 H 0.009 0.991 27 H 0.018 0.982 28 H 0.035 0.965 29 H 0.250 0.750 30 H 0.022 0.978 31 H 0.066 0.934 32 H 0.075 0.925 33 H 0.034 0.966 34 H 0.073 0.927 35 H 0.079 0.921 36 H 0.100 0.900 37 H 0.099 0.901 38 H 0.044 0.956 39 H 0.073 0.927 40 H 0.120 0.880 41 H 0.048 0.952 42 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.600 -22.334 1.112 23.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.342 5.342 3 C -0.396 4.396 4 H 0.072 0.928 5 C -0.240 4.240 6 N -0.581 5.581 7 Si 0.794 3.206 8 H -0.200 1.200 9 H -0.208 1.208 10 H -0.215 1.215 11 C 0.023 3.977 12 C -0.014 4.014 13 N -0.345 5.345 14 C -0.072 4.072 15 C 0.295 3.705 16 O -0.472 6.472 17 C -0.123 4.123 18 H 0.148 0.852 19 C -0.120 4.120 20 C -0.174 4.174 21 H 0.159 0.841 22 C -0.200 4.200 23 C -0.176 4.176 24 H 0.151 0.849 25 C -0.127 4.127 26 H 0.027 0.973 27 H 0.037 0.963 28 H 0.053 0.947 29 H 0.060 0.940 30 H 0.040 0.960 31 H 0.084 0.916 32 H 0.094 0.906 33 H 0.053 0.947 34 H 0.091 0.909 35 H 0.098 0.902 36 H 0.118 0.882 37 H 0.117 0.883 38 H 0.063 0.937 39 H 0.091 0.909 40 H 0.138 0.862 41 H 0.067 0.933 42 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 8.753 -21.671 1.113 23.398 hybrid contribution 0.197 1.711 0.182 1.732 sum 8.950 -19.960 1.295 21.913 Atomic orbital electron populations 1.20618 0.81791 0.96219 0.97971 1.44140 1.02570 1.01276 1.86249 1.19432 0.98904 0.87537 1.33694 0.92777 1.25779 0.98147 1.01759 0.98330 1.70195 1.17095 1.28030 1.42744 0.85229 0.78119 0.80103 0.77190 1.20047 1.20760 1.21529 1.21113 0.94903 0.87254 0.94412 1.21956 0.95230 0.84453 0.99721 1.48153 1.05805 1.08139 1.72451 1.22143 0.97894 0.83727 1.03425 1.21382 0.82324 0.91742 0.75099 1.90702 1.68856 1.36243 1.51396 1.22569 0.97107 0.93497 0.99154 0.85175 1.21876 0.97600 0.98424 0.94128 1.23658 0.92777 1.00254 1.00698 0.84114 1.23542 0.94004 1.01467 1.01024 1.23226 1.02249 1.00179 0.91929 0.84929 1.21897 0.93086 0.97943 0.99758 0.97290 0.96290 0.94706 0.94035 0.95968 0.91561 0.90628 0.94738 0.90885 0.90215 0.88170 0.88273 0.93684 0.90852 0.86207 0.93292 0.90189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.98 9.00 127.77 1.15 10.13 16 2 N -0.62 -33.08 2.92 -726.93 -2.13 -35.21 16 3 C -0.27 -15.87 9.66 84.03 0.81 -15.06 16 4 H 0.05 3.33 7.83 -2.91 -0.02 3.30 16 5 C -0.04 -2.66 5.23 84.86 0.44 -2.21 16 6 N -0.93 -56.67 10.46 21.65 0.23 -56.44 16 7 Si 0.97 48.02 29.56 68.60 2.03 50.05 16 8 H -0.28 -13.49 7.11 99.48 0.71 -12.78 16 9 H -0.28 -13.53 7.11 99.48 0.71 -12.82 16 10 H -0.29 -14.24 7.11 99.48 0.71 -13.53 16 11 C 0.15 6.66 6.03 86.38 0.52 7.18 16 12 C 0.11 4.56 5.71 86.38 0.49 5.05 16 13 N -0.61 -18.92 2.87 -846.75 -2.43 -21.35 16 14 C 0.07 1.26 9.88 127.77 1.26 2.52 16 15 C 0.51 16.86 6.73 87.65 0.59 17.45 16 16 O -0.59 -26.85 15.67 -3.05 -0.05 -26.90 16 17 C -0.10 -2.25 2.35 -10.25 -0.02 -2.27 16 18 H 0.13 1.96 6.48 -2.39 -0.02 1.95 16 19 C -0.08 -1.61 6.06 31.67 0.19 -1.42 16 20 C -0.16 -2.37 7.04 -9.22 -0.06 -2.43 16 21 H 0.14 1.41 8.14 -2.39 -0.02 1.39 16 22 C -0.16 -2.76 10.21 31.45 0.32 -2.43 16 23 C -0.16 -2.60 6.85 -10.06 -0.07 -2.67 16 24 H 0.13 1.60 8.14 -2.39 -0.02 1.58 16 25 C -0.09 -2.02 5.99 31.67 0.19 -1.83 16 26 H 0.01 0.48 7.34 -2.39 -0.02 0.46 16 27 H 0.02 1.02 7.26 -2.39 -0.02 1.00 16 28 H 0.03 1.44 7.84 -2.38 -0.02 1.42 16 29 H 0.25 14.62 8.31 -92.71 -0.77 13.85 16 30 H 0.02 1.07 8.04 -2.39 -0.02 1.05 16 31 H 0.07 2.48 7.86 -2.38 -0.02 2.46 16 32 H 0.08 2.92 8.07 -2.39 -0.02 2.90 16 33 H 0.03 1.73 7.51 -2.39 -0.02 1.71 16 34 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 35 H 0.08 1.37 8.10 -2.39 -0.02 1.35 16 36 H 0.10 1.22 6.34 -2.38 -0.02 1.20 16 37 H 0.10 1.44 8.09 -2.39 -0.02 1.42 16 38 H 0.04 1.18 8.04 -2.39 -0.02 1.16 16 39 H 0.07 1.56 8.14 -2.39 -0.02 1.55 16 40 H 0.12 1.46 8.14 -2.39 -0.02 1.44 16 41 H 0.05 1.47 7.30 -2.39 -0.02 1.46 16 42 H 0.08 1.63 8.14 -2.38 -0.02 1.61 16 Total: -1.00 -76.09 336.83 4.44 -71.65 By element: Atomic # 1 Polarization: 5.22 SS G_CDS: 0.98 Total: 6.20 kcal Atomic # 6 Polarization: 6.19 SS G_CDS: 5.82 Total: 12.00 kcal Atomic # 7 Polarization: -108.67 SS G_CDS: -4.33 Total: -113.00 kcal Atomic # 8 Polarization: -26.85 SS G_CDS: -0.05 Total: -26.90 kcal Atomic # 14 Polarization: 48.02 SS G_CDS: 2.03 Total: 50.05 kcal Total: -76.09 4.44 -71.65 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667612037.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.122 kcal (2) G-P(sol) polarization free energy of solvation -76.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds