Wall clock time and date at job start Mon Mar 30 2020 00:44:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46499 * 109.46974 * 2 1 4 4 C 1.46498 * 120.00352 * 281.69935 * 3 2 1 5 5 C 1.53001 * 109.46864 * 270.00381 * 4 3 2 6 6 N 1.46498 * 109.47137 * 179.97438 * 5 4 3 7 7 C 1.36939 * 120.00249 * 179.97438 * 6 5 4 8 8 H 1.08000 * 119.99531 * 0.02562 * 7 6 5 9 9 C 1.38817 * 120.00015 * 179.97438 * 7 6 5 10 10 N 1.31618 * 119.99895 * 0.02562 * 9 7 6 11 11 Si 1.86798 * 119.99786 * 179.97438 * 9 7 6 12 12 H 1.48499 * 109.47349 * 0.02562 * 11 9 7 13 13 H 1.48506 * 109.46694 * 120.00351 * 11 9 7 14 14 H 1.48491 * 109.47297 * 240.00058 * 11 9 7 15 15 C 1.34780 * 119.99699 * 101.69897 * 3 2 1 16 16 O 1.21282 * 119.99737 * 185.83891 * 15 3 2 17 17 C 1.50698 * 120.00227 * 5.84192 * 15 3 2 18 18 C 1.52993 * 110.94353 * 61.26962 * 17 15 3 19 19 C 1.54631 * 111.03718 * 185.25864 * 17 15 3 20 20 C 1.51099 * 104.82624 * 93.45337 * 19 17 15 21 21 C 1.30526 * 111.10684 * 16.38159 * 20 19 17 22 22 C 1.51101 * 111.09944 * 359.97438 * 21 20 19 23 23 H 1.09000 * 109.47020 * 317.34775 * 1 2 3 24 24 H 1.08993 * 109.46976 * 77.34884 * 1 2 3 25 25 H 1.08999 * 109.46860 * 197.35143 * 1 2 3 26 26 H 1.08991 * 109.46938 * 240.00123 * 2 1 3 27 27 H 1.08998 * 109.47189 * 119.99869 * 2 1 3 28 28 H 1.08999 * 109.46728 * 29.99787 * 4 3 2 29 29 H 1.08992 * 109.47472 * 149.99747 * 4 3 2 30 30 H 1.08999 * 109.46963 * 299.99262 * 5 4 3 31 31 H 1.09001 * 109.47798 * 59.99542 * 5 4 3 32 32 H 0.97006 * 119.99707 * 0.02562 * 6 5 4 33 33 H 0.97001 * 119.99462 * 179.97438 * 10 9 7 34 34 H 1.09001 * 109.47431 * 192.16966 * 18 17 15 35 35 H 1.09000 * 109.47297 * 312.16636 * 18 17 15 36 36 H 1.09001 * 109.47273 * 72.17120 * 18 17 15 37 37 H 1.09003 * 110.39073 * 334.58699 * 19 17 15 38 38 H 1.09003 * 110.38647 * 212.32401 * 19 17 15 39 39 H 1.08007 * 124.44842 * 196.35892 * 20 19 17 40 40 H 1.07997 * 124.45223 * 179.97438 * 21 20 19 41 41 H 1.09000 * 110.39209 * 102.37654 * 22 21 20 42 42 H 1.09005 * 110.38531 * 224.63706 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.0200 2.1576 -1.2423 5 6 3.3523 1.9570 -1.9673 6 7 3.3537 2.7329 -3.2099 7 6 4.4495 2.7090 -4.0309 8 1 5.3125 2.1178 -3.7624 9 6 4.4506 3.4438 -5.2086 10 7 3.3987 4.1640 -5.5359 11 14 5.9457 3.4117 -6.3280 12 1 6.9873 2.5331 -5.7378 13 1 5.5544 2.8881 -7.6615 14 1 6.4836 4.7879 -6.4751 15 6 2.4661 1.9376 1.1430 16 8 2.7706 3.1114 1.1674 17 6 2.5884 1.1014 2.3907 18 6 3.5769 -0.0479 2.1841 19 6 2.9933 1.9705 3.6039 20 6 1.6864 2.3557 4.2570 21 6 0.7111 1.5939 3.8421 22 6 1.2050 0.5739 2.8426 23 1 -0.3633 0.7558 0.6963 24 1 -0.3633 0.2251 -1.0027 25 1 -0.3633 -0.9809 0.3065 26 1 1.8933 -0.5138 -0.8899 27 1 1.8934 -0.5138 0.8900 28 1 1.2040 1.8213 -1.8820 29 1 1.8879 3.2144 -1.0105 30 1 4.1682 2.2934 -1.3276 31 1 3.4844 0.9002 -2.1991 32 1 2.5787 3.2643 -3.4508 33 1 3.3997 4.6777 -6.3587 34 1 3.4889 -0.7555 3.0085 35 1 3.3539 -0.5545 1.2451 36 1 4.5921 0.3475 2.1515 37 1 3.5286 2.8601 3.2720 38 1 3.6081 1.3943 4.2955 39 1 1.5739 3.1561 4.9734 40 1 -0.3142 1.6810 4.1701 41 1 1.3096 -0.4022 3.3162 42 1 0.5231 0.5124 1.9944 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001668546785.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:44:34 Heat of formation + Delta-G solvation = 6.954667 kcal Electronic energy + Delta-G solvation = -21035.546484 eV Core-core repulsion = 18016.863044 eV Total energy + Delta-G solvation = -3018.683441 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.91981 -37.77172 -36.23762 -34.60400 -32.24034 -31.46205 -30.35779 -28.30830 -27.56141 -25.83386 -23.99453 -23.45123 -22.06792 -20.78203 -19.19703 -18.42928 -17.11452 -16.82823 -16.14722 -15.77299 -15.09734 -14.56103 -14.34533 -13.97672 -13.74001 -13.31929 -13.30838 -13.01704 -12.88417 -12.69344 -12.57072 -12.31877 -12.18865 -11.68504 -11.43667 -11.23006 -11.21796 -10.94752 -10.90474 -10.86958 -10.63876 -10.63483 -10.05303 -9.74588 -9.48784 -8.97926 -8.85063 -8.44614 -6.90250 -5.73664 -3.02706 2.16425 2.79974 3.11343 3.45788 3.51252 3.53709 4.26628 4.41564 4.50772 4.63761 4.78397 4.90550 5.08889 5.09875 5.18671 5.35858 5.41587 5.49399 5.54332 5.55609 5.58944 5.64116 5.69270 5.70765 5.76939 5.86577 5.88417 6.01221 6.02300 6.08733 6.15025 6.20924 6.42667 6.63169 6.77248 6.79374 6.96108 7.59832 7.73166 8.38335 8.45182 9.55824 10.12451 10.47588 11.49403 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.030981 B = 0.004156 C = 0.004013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.550665 B = 6735.291048 C = 6975.894601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.085 3.915 3 N -0.605 5.605 4 C 0.107 3.893 5 C 0.144 3.856 6 N -0.730 5.730 7 C -0.237 4.237 8 H 0.070 0.930 9 C -0.014 4.014 10 N -0.933 5.933 11 Si 0.908 3.092 12 H -0.280 1.280 13 H -0.291 1.291 14 H -0.291 1.291 15 C 0.529 3.471 16 O -0.530 6.530 17 C -0.087 4.087 18 C -0.146 4.146 19 C -0.087 4.087 20 C -0.153 4.153 21 C -0.178 4.178 22 C -0.108 4.108 23 H 0.064 0.936 24 H 0.062 0.938 25 H 0.066 0.934 26 H 0.079 0.921 27 H 0.096 0.904 28 H 0.075 0.925 29 H 0.084 0.916 30 H 0.021 0.979 31 H 0.017 0.983 32 H 0.384 0.616 33 H 0.255 0.745 34 H 0.068 0.932 35 H 0.074 0.926 36 H 0.066 0.934 37 H 0.090 0.910 38 H 0.081 0.919 39 H 0.123 0.877 40 H 0.123 0.877 41 H 0.083 0.917 42 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.671 -11.737 19.412 23.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.038 4.038 3 N -0.338 5.338 4 C -0.015 4.015 5 C 0.015 3.985 6 N -0.375 5.375 7 C -0.368 4.368 8 H 0.088 0.912 9 C -0.210 4.210 10 N -0.582 5.582 11 Si 0.739 3.261 12 H -0.206 1.206 13 H -0.218 1.218 14 H -0.218 1.218 15 C 0.316 3.684 16 O -0.406 6.406 17 C -0.090 4.090 18 C -0.203 4.203 19 C -0.124 4.124 20 C -0.171 4.171 21 C -0.196 4.196 22 C -0.144 4.144 23 H 0.083 0.917 24 H 0.081 0.919 25 H 0.085 0.915 26 H 0.097 0.903 27 H 0.114 0.886 28 H 0.094 0.906 29 H 0.103 0.897 30 H 0.039 0.961 31 H 0.035 0.965 32 H 0.217 0.783 33 H 0.064 0.936 34 H 0.087 0.913 35 H 0.092 0.908 36 H 0.085 0.915 37 H 0.108 0.892 38 H 0.099 0.901 39 H 0.141 0.859 40 H 0.141 0.859 41 H 0.102 0.898 42 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -6.332 -11.149 19.340 23.204 hybrid contribution 0.447 0.216 -0.794 0.936 sum -5.885 -10.934 18.546 22.319 Atomic orbital electron populations 1.22358 0.96049 1.02141 1.02881 1.22029 0.94489 0.83202 1.04071 1.47837 1.63328 1.13914 1.08710 1.21671 0.99089 0.97072 0.83704 1.20894 0.94211 0.94884 0.88465 1.42225 1.18843 1.55913 1.20532 1.19257 0.94376 1.23310 0.99882 0.91167 1.24746 0.97806 0.99961 0.98486 1.69676 1.28937 1.34134 1.25455 0.86096 0.82110 0.77249 0.80629 1.20561 1.21849 1.21810 1.20226 0.76533 0.87616 0.84024 1.90695 1.48939 1.16376 1.84544 1.21590 0.97264 0.96403 0.93775 1.22060 0.98886 0.96506 1.02885 1.21375 0.96712 1.00127 0.94170 1.23262 0.95156 0.98870 0.99805 1.23194 0.98892 0.97945 0.99606 1.21976 0.94881 0.98373 0.99201 0.91684 0.91870 0.91464 0.90273 0.88618 0.90612 0.89750 0.96138 0.96476 0.78271 0.93551 0.91310 0.90768 0.91515 0.89176 0.90116 0.85867 0.85897 0.89847 0.88924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.59 9.02 37.16 0.34 -1.25 16 2 C 0.09 0.89 4.76 -4.04 -0.02 0.87 16 3 N -0.60 -8.85 2.49 -173.69 -0.43 -9.29 16 4 C 0.11 1.92 5.54 -4.04 -0.02 1.90 16 5 C 0.14 3.13 6.58 -4.04 -0.03 3.10 16 6 N -0.73 -19.49 5.60 -59.91 -0.34 -19.82 16 7 C -0.24 -6.91 9.99 -15.06 -0.15 -7.06 16 8 H 0.07 2.00 7.83 -52.49 -0.41 1.58 16 9 C -0.01 -0.42 5.50 -17.43 -0.10 -0.51 16 10 N -0.93 -28.93 13.06 55.49 0.72 -28.21 16 11 Si 0.91 22.95 29.55 -169.99 -5.02 17.93 16 12 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 13 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 14 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 15 C 0.53 8.32 6.52 -10.98 -0.07 8.25 16 16 O -0.53 -10.71 15.06 5.56 0.08 -10.62 16 17 C -0.09 -1.00 0.59 -153.86 -0.09 -1.09 16 18 C -0.15 -1.36 8.10 37.15 0.30 -1.06 16 19 C -0.09 -0.99 5.76 -26.83 -0.15 -1.15 16 20 C -0.15 -1.64 10.78 -35.70 -0.38 -2.03 16 21 C -0.18 -1.78 10.78 -35.70 -0.38 -2.16 16 22 C -0.11 -1.00 4.80 -26.74 -0.13 -1.13 16 23 H 0.06 0.63 6.36 -51.93 -0.33 0.30 16 24 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 25 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 26 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 27 H 0.10 0.82 3.33 -51.93 -0.17 0.64 16 28 H 0.08 1.26 8.03 -51.93 -0.42 0.84 16 29 H 0.08 1.70 7.35 -51.93 -0.38 1.32 16 30 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 31 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 32 H 0.38 10.64 7.67 -40.82 -0.31 10.32 16 33 H 0.25 7.58 8.31 -40.82 -0.34 7.24 16 34 H 0.07 0.48 7.84 -51.93 -0.41 0.07 16 35 H 0.07 0.67 5.25 -51.93 -0.27 0.39 16 36 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.09 1.25 6.95 -51.93 -0.36 0.89 16 38 H 0.08 0.75 7.89 -51.93 -0.41 0.34 16 39 H 0.12 1.16 8.06 -52.48 -0.42 0.73 16 40 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 41 H 0.08 0.61 7.69 -51.93 -0.40 0.21 16 42 H 0.09 0.86 3.13 -51.93 -0.16 0.69 16 LS Contribution 328.39 15.07 4.95 4.95 Total: -1.00 -34.19 328.39 -7.48 -41.67 By element: Atomic # 1 Polarization: 13.28 SS G_CDS: -6.56 Total: 6.72 kcal Atomic # 6 Polarization: -2.43 SS G_CDS: -0.89 Total: -3.33 kcal Atomic # 7 Polarization: -57.28 SS G_CDS: -0.04 Total: -57.32 kcal Atomic # 8 Polarization: -10.71 SS G_CDS: 0.08 Total: -10.62 kcal Atomic # 14 Polarization: 22.95 SS G_CDS: -5.02 Total: 17.93 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -34.19 -7.48 -41.67 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001668546785.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.625 kcal (2) G-P(sol) polarization free energy of solvation -34.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.670 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds