Wall clock time and date at job start Mon Mar 30 2020 00:44:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46499 * 109.46974 * 2 1 4 4 C 1.46498 * 120.00352 * 281.69935 * 3 2 1 5 5 C 1.53001 * 109.46864 * 270.00381 * 4 3 2 6 6 N 1.46498 * 109.47137 * 179.97438 * 5 4 3 7 7 C 1.36939 * 120.00249 * 179.97438 * 6 5 4 8 8 H 1.08000 * 119.99531 * 0.02562 * 7 6 5 9 9 C 1.38817 * 120.00015 * 179.97438 * 7 6 5 10 10 N 1.31618 * 119.99895 * 0.02562 * 9 7 6 11 11 Si 1.86798 * 119.99786 * 179.97438 * 9 7 6 12 12 H 1.48499 * 109.47349 * 0.02562 * 11 9 7 13 13 H 1.48506 * 109.46694 * 120.00351 * 11 9 7 14 14 H 1.48491 * 109.47297 * 240.00058 * 11 9 7 15 15 C 1.34780 * 119.99699 * 101.69897 * 3 2 1 16 16 O 1.21282 * 119.99737 * 185.83891 * 15 3 2 17 17 C 1.50698 * 120.00227 * 5.84192 * 15 3 2 18 18 C 1.52993 * 110.94353 * 61.26962 * 17 15 3 19 19 C 1.54631 * 111.03718 * 185.25864 * 17 15 3 20 20 C 1.51099 * 104.82624 * 93.45337 * 19 17 15 21 21 C 1.30526 * 111.10684 * 16.38159 * 20 19 17 22 22 C 1.51101 * 111.09944 * 359.97438 * 21 20 19 23 23 H 1.09000 * 109.47020 * 317.34775 * 1 2 3 24 24 H 1.08993 * 109.46976 * 77.34884 * 1 2 3 25 25 H 1.08999 * 109.46860 * 197.35143 * 1 2 3 26 26 H 1.08991 * 109.46938 * 240.00123 * 2 1 3 27 27 H 1.08998 * 109.47189 * 119.99869 * 2 1 3 28 28 H 1.08999 * 109.46728 * 29.99787 * 4 3 2 29 29 H 1.08992 * 109.47472 * 149.99747 * 4 3 2 30 30 H 1.08999 * 109.46963 * 299.99262 * 5 4 3 31 31 H 1.09001 * 109.47798 * 59.99542 * 5 4 3 32 32 H 0.97006 * 119.99707 * 0.02562 * 6 5 4 33 33 H 0.97001 * 119.99462 * 179.97438 * 10 9 7 34 34 H 1.09001 * 109.47431 * 192.16966 * 18 17 15 35 35 H 1.09000 * 109.47297 * 312.16636 * 18 17 15 36 36 H 1.09001 * 109.47273 * 72.17120 * 18 17 15 37 37 H 1.09003 * 110.39073 * 334.58699 * 19 17 15 38 38 H 1.09003 * 110.38647 * 212.32401 * 19 17 15 39 39 H 1.08007 * 124.44842 * 196.35892 * 20 19 17 40 40 H 1.07997 * 124.45223 * 179.97438 * 21 20 19 41 41 H 1.09000 * 110.39209 * 102.37654 * 22 21 20 42 42 H 1.09005 * 110.38531 * 224.63706 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.0200 2.1576 -1.2423 5 6 3.3523 1.9570 -1.9673 6 7 3.3537 2.7329 -3.2099 7 6 4.4495 2.7090 -4.0309 8 1 5.3125 2.1178 -3.7624 9 6 4.4506 3.4438 -5.2086 10 7 3.3987 4.1640 -5.5359 11 14 5.9457 3.4117 -6.3280 12 1 6.9873 2.5331 -5.7378 13 1 5.5544 2.8881 -7.6615 14 1 6.4836 4.7879 -6.4751 15 6 2.4661 1.9376 1.1430 16 8 2.7706 3.1114 1.1674 17 6 2.5884 1.1014 2.3907 18 6 3.5769 -0.0479 2.1841 19 6 2.9933 1.9705 3.6039 20 6 1.6864 2.3557 4.2570 21 6 0.7111 1.5939 3.8421 22 6 1.2050 0.5739 2.8426 23 1 -0.3633 0.7558 0.6963 24 1 -0.3633 0.2251 -1.0027 25 1 -0.3633 -0.9809 0.3065 26 1 1.8933 -0.5138 -0.8899 27 1 1.8934 -0.5138 0.8900 28 1 1.2040 1.8213 -1.8820 29 1 1.8879 3.2144 -1.0105 30 1 4.1682 2.2934 -1.3276 31 1 3.4844 0.9002 -2.1991 32 1 2.5787 3.2643 -3.4508 33 1 3.3997 4.6777 -6.3587 34 1 3.4889 -0.7555 3.0085 35 1 3.3539 -0.5545 1.2451 36 1 4.5921 0.3475 2.1515 37 1 3.5286 2.8601 3.2720 38 1 3.6081 1.3943 4.2955 39 1 1.5739 3.1561 4.9734 40 1 -0.3142 1.6810 4.1701 41 1 1.3096 -0.4022 3.3162 42 1 0.5231 0.5124 1.9944 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001668546785.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:44:34 Heat of formation + Delta-G solvation = -15.250978 kcal Electronic energy + Delta-G solvation = -21036.509393 eV Core-core repulsion = 18016.863044 eV Total energy + Delta-G solvation = -3019.646350 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.97938 -38.82334 -37.58121 -36.44490 -33.78921 -32.65044 -31.68199 -29.36336 -28.96383 -26.65166 -25.87638 -24.36356 -23.74464 -22.05200 -20.10096 -19.55388 -19.08947 -17.82054 -17.42528 -16.98485 -16.44382 -16.00753 -15.75315 -15.28865 -15.16217 -14.90028 -14.71596 -14.29875 -13.78285 -13.66013 -13.54856 -13.20750 -13.07406 -12.98491 -12.93168 -12.74542 -12.56607 -12.29886 -12.25731 -12.10886 -11.96765 -11.88983 -11.69430 -11.47265 -11.01559 -10.71768 -9.80486 -9.69253 -9.09675 -8.00053 -5.31329 1.38940 1.44837 1.47076 1.56980 1.60143 1.93371 2.54090 3.33176 3.37421 3.50423 3.69438 3.93262 4.02627 4.12077 4.15219 4.17673 4.34424 4.38847 4.43194 4.52054 4.59796 4.69887 4.77924 4.82076 4.86955 4.90481 4.93435 5.00011 5.03201 5.06821 5.09614 5.15568 5.28959 5.41397 5.42061 5.56725 5.66383 6.00295 6.21300 6.43150 7.17239 7.27334 7.98317 8.24114 9.23658 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.030981 B = 0.004156 C = 0.004013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.550665 B = 6735.291048 C = 6975.894601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.077 3.923 3 N -0.601 5.601 4 C 0.122 3.878 5 C 0.152 3.848 6 N -0.743 5.743 7 C -0.252 4.252 8 H 0.074 0.926 9 C -0.072 4.072 10 N -0.968 5.968 11 Si 0.979 3.021 12 H -0.266 1.266 13 H -0.286 1.286 14 H -0.293 1.293 15 C 0.519 3.481 16 O -0.588 6.588 17 C -0.084 4.084 18 C -0.145 4.145 19 C -0.089 4.089 20 C -0.178 4.178 21 C -0.174 4.174 22 C -0.104 4.104 23 H 0.058 0.942 24 H 0.052 0.948 25 H 0.100 0.900 26 H 0.082 0.918 27 H 0.123 0.877 28 H 0.092 0.908 29 H 0.054 0.946 30 H -0.003 1.003 31 H 0.032 0.968 32 H 0.375 0.625 33 H 0.254 0.746 34 H 0.103 0.897 35 H 0.079 0.921 36 H 0.052 0.948 37 H 0.054 0.946 38 H 0.103 0.897 39 H 0.129 0.871 40 H 0.141 0.859 41 H 0.118 0.882 42 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.015 -14.599 20.352 26.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.044 4.044 3 N -0.333 5.333 4 C -0.002 4.002 5 C 0.024 3.976 6 N -0.387 5.387 7 C -0.383 4.383 8 H 0.092 0.908 9 C -0.265 4.265 10 N -0.618 5.618 11 Si 0.807 3.193 12 H -0.191 1.191 13 H -0.213 1.213 14 H -0.220 1.220 15 C 0.308 3.692 16 O -0.467 6.467 17 C -0.087 4.087 18 C -0.202 4.202 19 C -0.126 4.126 20 C -0.195 4.195 21 C -0.192 4.192 22 C -0.141 4.141 23 H 0.077 0.923 24 H 0.071 0.929 25 H 0.119 0.881 26 H 0.100 0.900 27 H 0.140 0.860 28 H 0.110 0.890 29 H 0.073 0.927 30 H 0.015 0.985 31 H 0.050 0.950 32 H 0.207 0.793 33 H 0.062 0.938 34 H 0.122 0.878 35 H 0.098 0.902 36 H 0.071 0.929 37 H 0.073 0.927 38 H 0.121 0.879 39 H 0.146 0.854 40 H 0.159 0.841 41 H 0.136 0.864 42 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -6.684 -14.077 20.311 25.600 hybrid contribution 0.538 1.103 -1.041 1.609 sum -6.146 -12.975 19.270 24.030 Atomic orbital electron populations 1.22334 0.94504 1.03873 1.02271 1.22399 0.95753 0.80641 1.05564 1.47947 1.62926 1.15312 1.07134 1.21268 0.97430 0.96260 0.85246 1.20924 0.95520 0.94583 0.86590 1.42414 1.18047 1.56421 1.21793 1.19637 0.95096 1.23178 1.00410 0.90826 1.25638 1.00899 0.99819 1.00120 1.69832 1.31025 1.35049 1.25941 0.85004 0.78719 0.77147 0.78440 1.19051 1.21297 1.21962 1.21180 0.75153 0.87411 0.85421 1.90668 1.51334 1.19138 1.85600 1.21648 0.99583 0.96378 0.91138 1.22109 0.97378 0.96088 1.04600 1.21395 0.97304 0.99167 0.94749 1.23381 0.95196 1.00007 1.00964 1.23489 0.99452 0.97440 0.98831 1.22061 0.93060 0.99604 0.99329 0.92285 0.92928 0.88125 0.89965 0.85967 0.88997 0.92734 0.98488 0.94968 0.79322 0.93755 0.87847 0.90234 0.92863 0.92725 0.87898 0.85359 0.84123 0.86391 0.88523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.58 9.02 71.98 0.65 -1.94 16 2 C 0.08 1.43 4.76 86.38 0.41 1.84 16 3 N -0.60 -17.33 2.49 -821.83 -2.05 -19.38 16 4 C 0.12 4.47 5.54 86.38 0.48 4.95 16 5 C 0.15 6.71 6.58 86.38 0.57 7.28 16 6 N -0.74 -40.61 5.60 -343.45 -1.92 -42.53 16 7 C -0.25 -14.82 9.99 84.03 0.84 -13.98 16 8 H 0.07 4.19 7.83 -2.91 -0.02 4.17 16 9 C -0.07 -4.30 5.50 84.86 0.47 -3.83 16 10 N -0.97 -60.94 13.06 21.65 0.28 -60.66 16 11 Si 0.98 47.31 29.55 68.60 2.03 49.34 16 12 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 13 H -0.29 -13.53 7.11 99.48 0.71 -12.83 16 14 H -0.29 -14.14 7.11 99.48 0.71 -13.44 16 15 C 0.52 16.48 6.52 87.66 0.57 17.05 16 16 O -0.59 -25.15 15.06 -3.04 -0.05 -25.20 16 17 C -0.08 -1.80 0.59 -51.76 -0.03 -1.83 16 18 C -0.15 -2.30 8.10 71.98 0.58 -1.72 16 19 C -0.09 -2.01 5.76 30.53 0.18 -1.83 16 20 C -0.18 -3.66 10.78 26.26 0.28 -3.38 16 21 C -0.17 -3.05 10.78 26.26 0.28 -2.77 16 22 C -0.10 -1.59 4.80 30.59 0.15 -1.44 16 23 H 0.06 0.99 6.36 -2.39 -0.02 0.97 16 24 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 25 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 26 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 27 H 0.12 1.61 3.33 -2.39 -0.01 1.60 16 28 H 0.09 3.06 8.03 -2.39 -0.02 3.04 16 29 H 0.05 2.33 7.35 -2.39 -0.02 2.32 16 30 H 0.00 -0.14 8.14 -2.39 -0.02 -0.16 16 31 H 0.03 1.34 8.14 -2.39 -0.02 1.33 16 32 H 0.37 21.48 7.67 -92.70 -0.71 20.77 16 33 H 0.25 15.30 8.31 -92.71 -0.77 14.53 16 34 H 0.10 0.96 7.84 -2.39 -0.02 0.94 16 35 H 0.08 1.17 5.25 -2.39 -0.01 1.16 16 36 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 37 H 0.05 1.62 6.95 -2.39 -0.02 1.60 16 38 H 0.10 1.77 7.89 -2.39 -0.02 1.75 16 39 H 0.13 2.39 8.06 -2.91 -0.02 2.37 16 40 H 0.14 1.93 8.06 -2.91 -0.02 1.91 16 41 H 0.12 1.06 7.69 -2.39 -0.02 1.04 16 42 H 0.10 1.44 3.13 -2.38 -0.01 1.43 16 Total: -1.00 -76.73 328.39 4.02 -72.70 By element: Atomic # 1 Polarization: 27.02 SS G_CDS: 0.30 Total: 27.32 kcal Atomic # 6 Polarization: -7.02 SS G_CDS: 5.43 Total: -1.59 kcal Atomic # 7 Polarization: -118.89 SS G_CDS: -3.69 Total: -122.57 kcal Atomic # 8 Polarization: -25.15 SS G_CDS: -0.05 Total: -25.20 kcal Atomic # 14 Polarization: 47.31 SS G_CDS: 2.03 Total: 49.34 kcal Total: -76.73 4.02 -72.70 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001668546785.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.454 kcal (2) G-P(sol) polarization free energy of solvation -76.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds