Wall clock time and date at job start Mon Mar 30 2020 01:26:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36941 * 120.00162 * 2 1 4 4 H 1.07995 * 119.99906 * 203.03964 * 3 2 1 5 5 C 1.38809 * 119.99844 * 23.04205 * 3 2 1 6 6 N 1.31618 * 120.00480 * 12.92651 * 5 3 2 7 7 Si 1.86806 * 119.99587 * 192.92724 * 5 3 2 8 8 H 1.48501 * 109.47117 * 60.00377 * 7 5 3 9 9 H 1.48502 * 109.46678 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.47327 * 299.99815 * 7 5 3 11 11 C 1.46498 * 119.99865 * 179.97438 * 2 1 3 12 12 C 1.53005 * 109.47002 * 90.00451 * 11 2 1 13 13 C 1.52995 * 109.47069 * 179.97438 * 12 11 2 14 14 N 1.46506 * 109.46687 * 179.97438 * 13 12 11 15 15 C 1.34775 * 119.99804 * 180.02562 * 14 13 12 16 16 O 1.21286 * 120.00102 * 0.02562 * 15 14 13 17 17 C 1.50706 * 120.00201 * 180.02562 * 15 14 13 18 18 H 1.09003 * 110.66872 * 56.76208 * 17 15 14 19 19 C 1.54889 * 110.75672 * 180.02562 * 17 15 14 20 20 C 1.54266 * 104.19407 * 156.25690 * 19 17 15 21 21 H 1.09001 * 117.41545 * 116.36723 * 20 19 17 22 22 C 1.53002 * 118.19826 * 270.99634 * 20 19 17 23 23 C 1.53872 * 106.59818 * 336.38930 * 20 19 17 24 24 H 1.08995 * 121.33394 * 138.06454 * 23 20 19 25 25 C 1.54266 * 106.60078 * 359.97438 * 23 20 19 26 26 H 1.09002 * 109.47315 * 275.13297 * 1 2 3 27 27 H 1.09009 * 109.46656 * 35.12870 * 1 2 3 28 28 H 1.08992 * 109.47040 * 155.12118 * 1 2 3 29 29 H 0.97000 * 119.99954 * 179.97438 * 6 5 3 30 30 H 1.09005 * 109.47341 * 210.00419 * 11 2 1 31 31 H 1.08999 * 109.47217 * 330.00680 * 11 2 1 32 32 H 1.08997 * 109.46958 * 300.00454 * 12 11 2 33 33 H 1.09005 * 109.46588 * 60.00257 * 12 11 2 34 34 H 1.08997 * 109.47715 * 300.00130 * 13 12 11 35 35 H 1.08999 * 109.47069 * 60.00278 * 13 12 11 36 36 H 0.97000 * 119.99896 * 0.02562 * 14 13 12 37 37 H 1.09000 * 110.48383 * 274.93556 * 19 17 15 38 38 H 1.08993 * 110.48727 * 37.57655 * 19 17 15 39 39 H 1.08996 * 117.46177 * 201.21204 * 22 20 19 40 40 H 1.08998 * 117.45731 * 346.02199 * 22 20 19 41 41 H 1.09002 * 110.48880 * 264.93476 * 25 23 20 42 42 H 1.08999 * 110.48449 * 142.28807 * 25 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1651 1.2232 -0.3660 5 6 1.5387 2.3401 0.4705 6 7 0.4118 2.2598 1.1457 7 14 2.3161 4.0073 0.1455 8 1 2.4198 4.2280 -1.3194 9 1 1.4738 5.0719 0.7475 10 1 3.6721 4.0475 0.7494 11 6 2.1975 -1.2687 0.0006 12 6 2.4525 -1.7110 -1.4418 13 6 3.2180 -3.0357 -1.4412 14 7 3.4617 -3.4594 -2.8223 15 6 4.1241 -4.6070 -3.0682 16 8 4.5181 -5.2893 -2.1460 17 6 4.3753 -5.0427 -4.4889 18 1 4.9148 -4.2711 -5.0382 19 6 5.1489 -6.3841 -4.5230 20 6 4.8010 -6.9864 -5.9000 21 1 5.6174 -7.1207 -6.6097 22 6 3.5615 -7.8769 -6.0074 23 6 3.4631 -6.3590 -6.3289 24 1 3.2938 -6.0311 -7.3545 25 6 3.0442 -5.3978 -5.1973 26 1 -0.3634 0.0919 1.0235 27 1 -0.3633 0.8406 -0.5914 28 1 -0.3633 -0.9322 -0.4323 29 1 -0.0149 3.0664 1.4748 30 1 3.1499 -1.1382 0.5144 31 1 1.6083 -2.0282 0.5146 32 1 1.5002 -1.8414 -1.9556 33 1 3.0417 -0.9515 -1.9558 34 1 4.1704 -2.9048 -0.9275 35 1 2.6293 -3.7953 -0.9270 36 1 3.1463 -2.9139 -3.5598 37 1 6.2216 -6.2080 -4.4436 38 1 4.8089 -7.0410 -3.7225 39 1 3.5106 -8.5683 -6.8484 40 1 3.1172 -8.2340 -5.0783 41 1 2.3644 -5.8957 -4.5059 42 1 2.5813 -4.5015 -5.6100 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001689825324.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:46 Heat of formation + Delta-G solvation = -3.021091 kcal Electronic energy + Delta-G solvation = -19794.903749 eV Core-core repulsion = 16775.787727 eV Total energy + Delta-G solvation = -3019.116022 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.43912 -38.56564 -36.24714 -34.73834 -32.46783 -31.67157 -29.84919 -28.50067 -26.03954 -25.56855 -23.75689 -21.90821 -21.23309 -20.52645 -19.94590 -19.60791 -17.04381 -16.74134 -16.63120 -15.79039 -15.40846 -14.82974 -14.48472 -14.06367 -13.54530 -13.41888 -13.31686 -13.17661 -12.84936 -12.64682 -11.87509 -11.69816 -11.60747 -11.53101 -11.34513 -11.30498 -11.01120 -10.78663 -10.77862 -10.49462 -10.32171 -10.20580 -10.05713 -9.86534 -9.80972 -9.65495 -8.95912 -8.53804 -6.73362 -5.71338 -3.18580 2.62228 3.18080 3.32066 3.38901 3.44033 3.44912 4.17451 4.32193 4.49063 4.50427 4.78601 4.89097 4.91985 5.08370 5.18346 5.24254 5.29734 5.42860 5.44489 5.46123 5.49208 5.63550 5.80499 5.82802 5.87995 5.90771 5.92212 6.08968 6.11265 6.20223 6.41979 6.58818 6.75128 6.76925 6.94319 7.37749 7.55793 7.73826 7.80888 8.25288 8.41260 9.24934 9.88538 10.37704 11.33467 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.037512 B = 0.002943 C = 0.002918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.255657 B = 9511.512284 C = 9593.026708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.162 3.838 2 N -0.603 5.603 3 C -0.256 4.256 4 H 0.067 0.933 5 C 0.001 3.999 6 N -0.908 5.908 7 Si 0.905 3.095 8 H -0.285 1.285 9 H -0.290 1.290 10 H -0.283 1.283 11 C 0.155 3.845 12 C -0.150 4.150 13 C 0.119 3.881 14 N -0.725 5.725 15 C 0.516 3.484 16 O -0.544 6.544 17 C -0.115 4.115 18 H 0.103 0.897 19 C -0.077 4.077 20 C -0.164 4.164 21 H 0.110 0.890 22 C -0.154 4.154 23 C -0.168 4.168 24 H 0.113 0.887 25 C -0.084 4.084 26 H 0.031 0.969 27 H 0.040 0.960 28 H -0.003 1.003 29 H 0.253 0.747 30 H 0.049 0.951 31 H 0.037 0.963 32 H 0.059 0.941 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.063 0.937 36 H 0.400 0.600 37 H 0.073 0.927 38 H 0.082 0.918 39 H 0.098 0.902 40 H 0.094 0.906 41 H 0.073 0.927 42 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.553 -16.414 -15.136 23.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.326 5.326 3 C -0.386 4.386 4 H 0.085 0.915 5 C -0.197 4.197 6 N -0.553 5.553 7 Si 0.735 3.265 8 H -0.211 1.211 9 H -0.216 1.216 10 H -0.209 1.209 11 C 0.027 3.973 12 C -0.191 4.191 13 C -0.005 4.005 14 N -0.376 5.376 15 C 0.302 3.698 16 O -0.422 6.422 17 C -0.136 4.136 18 H 0.121 0.879 19 C -0.115 4.115 20 C -0.182 4.182 21 H 0.128 0.872 22 C -0.191 4.191 23 C -0.186 4.186 24 H 0.131 0.869 25 C -0.122 4.122 26 H 0.049 0.951 27 H 0.058 0.942 28 H 0.016 0.984 29 H 0.063 0.937 30 H 0.067 0.933 31 H 0.056 0.944 32 H 0.078 0.922 33 H 0.084 0.916 34 H 0.083 0.917 35 H 0.081 0.919 36 H 0.234 0.766 37 H 0.092 0.908 38 H 0.101 0.899 39 H 0.116 0.884 40 H 0.112 0.888 41 H 0.092 0.908 42 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 5.706 -16.722 -14.339 22.755 hybrid contribution 0.216 1.356 -0.627 1.510 sum 5.922 -15.366 -14.966 22.252 Atomic orbital electron populations 1.20790 0.82679 0.95297 0.99479 1.43890 1.01846 1.00672 1.86182 1.19139 0.98249 0.85657 1.35542 0.91505 1.25037 0.97922 0.98564 0.98201 1.70060 1.19447 1.27294 1.38519 0.86333 0.78475 0.83820 0.77880 1.21129 1.21631 1.20918 1.20597 0.96339 0.88499 0.91864 1.22525 0.99437 0.94232 1.02889 1.21460 1.00361 0.96938 0.81694 1.46176 1.57833 1.23793 1.09798 1.20478 0.77563 0.80781 0.90978 1.90692 1.51143 1.54004 1.46321 1.22517 0.98196 0.99618 0.93257 0.87925 1.21796 1.00088 0.94262 0.95377 1.23281 0.91845 1.04212 0.98852 0.87243 1.23454 1.00607 0.91984 1.03039 1.23586 1.02132 0.93590 0.99329 0.86873 1.21894 0.95497 0.98909 0.95919 0.95082 0.94172 0.98417 0.93703 0.93300 0.94438 0.92249 0.91588 0.91678 0.91859 0.76610 0.90809 0.89940 0.88403 0.88751 0.90812 0.90357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.01 8.98 59.85 0.54 4.55 16 2 N -0.60 -15.20 2.92 -181.12 -0.53 -15.73 16 3 C -0.26 -7.05 9.65 -15.06 -0.15 -7.20 16 4 H 0.07 1.79 7.86 -52.49 -0.41 1.37 16 5 C 0.00 0.03 5.10 -17.43 -0.09 -0.06 16 6 N -0.91 -26.70 10.71 55.49 0.59 -26.10 16 7 Si 0.90 21.85 29.57 -169.99 -5.03 16.83 16 8 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 9 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 10 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 11 C 0.16 3.14 5.64 -4.04 -0.02 3.12 16 12 C -0.15 -2.46 5.65 -26.73 -0.15 -2.61 16 13 C 0.12 1.73 5.67 -4.04 -0.02 1.71 16 14 N -0.73 -8.94 5.56 -60.29 -0.33 -9.28 16 15 C 0.52 6.74 7.13 -10.98 -0.08 6.66 16 16 O -0.54 -9.24 15.73 5.55 0.09 -9.15 16 17 C -0.11 -1.09 3.29 -89.76 -0.30 -1.39 16 18 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 19 C -0.08 -0.75 5.70 -25.07 -0.14 -0.89 16 20 C -0.16 -1.29 6.85 -89.50 -0.61 -1.90 16 21 H 0.11 0.74 8.14 -51.93 -0.42 0.32 16 22 C -0.15 -1.14 10.21 -25.42 -0.26 -1.40 16 23 C -0.17 -1.27 7.04 -88.19 -0.62 -1.89 16 24 H 0.11 0.73 8.14 -51.93 -0.42 0.30 16 25 C -0.08 -0.70 6.08 -25.06 -0.15 -0.85 16 26 H 0.03 0.83 7.34 -51.93 -0.38 0.45 16 27 H 0.04 1.06 7.34 -51.92 -0.38 0.67 16 28 H 0.00 -0.06 8.03 -51.93 -0.42 -0.48 16 29 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 30 H 0.05 1.00 8.04 -51.93 -0.42 0.58 16 31 H 0.04 0.72 8.07 -51.93 -0.42 0.30 16 32 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 34 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.40 4.01 8.47 -40.82 -0.35 3.66 16 37 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.08 0.95 7.43 -51.93 -0.39 0.56 16 39 H 0.10 0.59 8.14 -51.93 -0.42 0.16 16 40 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.07 0.69 8.04 -51.93 -0.42 0.27 16 42 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 341.31 15.07 5.14 5.14 Total: -1.00 -31.79 341.31 -9.49 -41.27 By element: Atomic # 1 Polarization: 6.53 SS G_CDS: -7.36 Total: -0.83 kcal Atomic # 6 Polarization: -0.10 SS G_CDS: -2.06 Total: -2.15 kcal Atomic # 7 Polarization: -50.84 SS G_CDS: -0.27 Total: -51.11 kcal Atomic # 8 Polarization: -9.24 SS G_CDS: 0.09 Total: -9.15 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.03 Total: 16.83 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -31.79 -9.49 -41.27 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689825324.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.254 kcal (2) G-P(sol) polarization free energy of solvation -31.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds