Wall clock time and date at job start Mon Mar 30 2020 01:26:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36941 * 120.00162 * 2 1 4 4 H 1.07995 * 119.99906 * 203.03964 * 3 2 1 5 5 C 1.38809 * 119.99844 * 23.04205 * 3 2 1 6 6 N 1.31618 * 120.00480 * 12.92651 * 5 3 2 7 7 Si 1.86806 * 119.99587 * 192.92724 * 5 3 2 8 8 H 1.48501 * 109.47117 * 60.00377 * 7 5 3 9 9 H 1.48502 * 109.46678 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.47327 * 299.99815 * 7 5 3 11 11 C 1.46498 * 119.99865 * 179.97438 * 2 1 3 12 12 C 1.53005 * 109.47002 * 90.00451 * 11 2 1 13 13 C 1.52995 * 109.47069 * 179.97438 * 12 11 2 14 14 N 1.46506 * 109.46687 * 179.97438 * 13 12 11 15 15 C 1.34775 * 119.99804 * 180.02562 * 14 13 12 16 16 O 1.21286 * 120.00102 * 0.02562 * 15 14 13 17 17 C 1.50706 * 120.00201 * 180.02562 * 15 14 13 18 18 H 1.09003 * 110.66872 * 56.76208 * 17 15 14 19 19 C 1.54889 * 110.75672 * 180.02562 * 17 15 14 20 20 C 1.54266 * 104.19407 * 156.25690 * 19 17 15 21 21 H 1.09001 * 117.41545 * 116.36723 * 20 19 17 22 22 C 1.53002 * 118.19826 * 270.99634 * 20 19 17 23 23 C 1.53872 * 106.59818 * 336.38930 * 20 19 17 24 24 H 1.08995 * 121.33394 * 138.06454 * 23 20 19 25 25 C 1.54266 * 106.60078 * 359.97438 * 23 20 19 26 26 H 1.09002 * 109.47315 * 275.13297 * 1 2 3 27 27 H 1.09009 * 109.46656 * 35.12870 * 1 2 3 28 28 H 1.08992 * 109.47040 * 155.12118 * 1 2 3 29 29 H 0.97000 * 119.99954 * 179.97438 * 6 5 3 30 30 H 1.09005 * 109.47341 * 210.00419 * 11 2 1 31 31 H 1.08999 * 109.47217 * 330.00680 * 11 2 1 32 32 H 1.08997 * 109.46958 * 300.00454 * 12 11 2 33 33 H 1.09005 * 109.46588 * 60.00257 * 12 11 2 34 34 H 1.08997 * 109.47715 * 300.00130 * 13 12 11 35 35 H 1.08999 * 109.47069 * 60.00278 * 13 12 11 36 36 H 0.97000 * 119.99896 * 0.02562 * 14 13 12 37 37 H 1.09000 * 110.48383 * 274.93556 * 19 17 15 38 38 H 1.08993 * 110.48727 * 37.57655 * 19 17 15 39 39 H 1.08996 * 117.46177 * 201.21204 * 22 20 19 40 40 H 1.08998 * 117.45731 * 346.02199 * 22 20 19 41 41 H 1.09002 * 110.48880 * 264.93476 * 25 23 20 42 42 H 1.08999 * 110.48449 * 142.28807 * 25 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1651 1.2232 -0.3660 5 6 1.5387 2.3401 0.4705 6 7 0.4118 2.2598 1.1457 7 14 2.3161 4.0073 0.1455 8 1 2.4198 4.2280 -1.3194 9 1 1.4738 5.0719 0.7475 10 1 3.6721 4.0475 0.7494 11 6 2.1975 -1.2687 0.0006 12 6 2.4525 -1.7110 -1.4418 13 6 3.2180 -3.0357 -1.4412 14 7 3.4617 -3.4594 -2.8223 15 6 4.1241 -4.6070 -3.0682 16 8 4.5181 -5.2893 -2.1460 17 6 4.3753 -5.0427 -4.4889 18 1 4.9148 -4.2711 -5.0382 19 6 5.1489 -6.3841 -4.5230 20 6 4.8010 -6.9864 -5.9000 21 1 5.6174 -7.1207 -6.6097 22 6 3.5615 -7.8769 -6.0074 23 6 3.4631 -6.3590 -6.3289 24 1 3.2938 -6.0311 -7.3545 25 6 3.0442 -5.3978 -5.1973 26 1 -0.3634 0.0919 1.0235 27 1 -0.3633 0.8406 -0.5914 28 1 -0.3633 -0.9322 -0.4323 29 1 -0.0149 3.0664 1.4748 30 1 3.1499 -1.1382 0.5144 31 1 1.6083 -2.0282 0.5146 32 1 1.5002 -1.8414 -1.9556 33 1 3.0417 -0.9515 -1.9558 34 1 4.1704 -2.9048 -0.9275 35 1 2.6293 -3.7953 -0.9270 36 1 3.1463 -2.9139 -3.5598 37 1 6.2216 -6.2080 -4.4436 38 1 4.8089 -7.0410 -3.7225 39 1 3.5106 -8.5683 -6.8484 40 1 3.1172 -8.2340 -5.0783 41 1 2.3644 -5.8957 -4.5059 42 1 2.5813 -4.5015 -5.6100 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001689825324.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:46 Heat of formation + Delta-G solvation = -21.974321 kcal Electronic energy + Delta-G solvation = -19795.725623 eV Core-core repulsion = 16775.787727 eV Total energy + Delta-G solvation = -3019.937896 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.32871 -39.43129 -37.93600 -36.17256 -33.87174 -32.89251 -31.42157 -29.19221 -27.95919 -27.15364 -24.85708 -23.32525 -22.19599 -21.86959 -20.74265 -20.51971 -18.72561 -18.00614 -17.36274 -17.08902 -16.68441 -16.48394 -15.69504 -15.48582 -14.87056 -14.78172 -14.58483 -14.18888 -14.00474 -13.92549 -13.33844 -13.06213 -12.76753 -12.64523 -12.57705 -12.48578 -12.32512 -12.25868 -12.12613 -12.09875 -11.99910 -11.83825 -11.49126 -10.97341 -10.84483 -10.62937 -10.51176 -10.08953 -8.77391 -7.81923 -5.31793 1.47424 1.49485 1.56245 1.60260 2.19136 2.52403 2.67261 3.31204 3.44878 3.66029 3.69111 3.83008 4.08502 4.11427 4.18552 4.26093 4.32562 4.44906 4.46771 4.52304 4.62560 4.66426 4.74157 4.80784 4.86164 4.92002 4.94018 5.03259 5.13395 5.19974 5.25581 5.28947 5.33863 5.41495 5.46878 5.51178 5.63827 5.71594 6.33677 6.56547 7.16009 7.24197 7.88147 8.31957 9.21123 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.037512 B = 0.002943 C = 0.002918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.255657 B = 9511.512284 C = 9593.026708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.175 3.825 2 N -0.621 5.621 3 C -0.263 4.263 4 H 0.072 0.928 5 C -0.057 4.057 6 N -0.941 5.941 7 Si 0.970 3.030 8 H -0.276 1.276 9 H -0.296 1.296 10 H -0.276 1.276 11 C 0.150 3.850 12 C -0.127 4.127 13 C 0.130 3.870 14 N -0.716 5.716 15 C 0.514 3.486 16 O -0.588 6.588 17 C -0.107 4.107 18 H 0.126 0.874 19 C -0.081 4.081 20 C -0.166 4.166 21 H 0.125 0.875 22 C -0.158 4.158 23 C -0.163 4.163 24 H 0.132 0.868 25 C -0.084 4.084 26 H 0.002 0.998 27 H 0.015 0.985 28 H 0.033 0.967 29 H 0.248 0.752 30 H 0.042 0.958 31 H 0.048 0.952 32 H 0.066 0.934 33 H 0.060 0.940 34 H 0.056 0.944 35 H 0.060 0.940 36 H 0.414 0.586 37 H 0.074 0.926 38 H 0.056 0.944 39 H 0.115 0.885 40 H 0.082 0.918 41 H 0.058 0.942 42 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.253 -16.688 -17.516 24.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.345 5.345 3 C -0.394 4.394 4 H 0.090 0.910 5 C -0.251 4.251 6 N -0.588 5.588 7 Si 0.798 3.202 8 H -0.202 1.202 9 H -0.222 1.222 10 H -0.202 1.202 11 C 0.023 3.977 12 C -0.167 4.167 13 C 0.006 3.994 14 N -0.368 5.368 15 C 0.302 3.698 16 O -0.469 6.469 17 C -0.128 4.128 18 H 0.144 0.856 19 C -0.119 4.119 20 C -0.183 4.183 21 H 0.142 0.858 22 C -0.195 4.195 23 C -0.181 4.181 24 H 0.150 0.850 25 C -0.121 4.121 26 H 0.021 0.979 27 H 0.034 0.966 28 H 0.051 0.949 29 H 0.057 0.943 30 H 0.061 0.939 31 H 0.066 0.934 32 H 0.084 0.916 33 H 0.079 0.921 34 H 0.074 0.926 35 H 0.078 0.922 36 H 0.251 0.749 37 H 0.092 0.908 38 H 0.075 0.925 39 H 0.133 0.867 40 H 0.101 0.899 41 H 0.077 0.923 42 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 6.420 -17.014 -16.761 24.731 hybrid contribution 0.017 1.347 0.152 1.355 sum 6.437 -15.667 -16.609 23.722 Atomic orbital electron populations 1.20548 0.82815 0.96011 0.97597 1.44156 1.02153 1.01730 1.86434 1.19496 0.98519 0.86760 1.34579 0.91048 1.25840 0.98695 1.02057 0.98535 1.70234 1.20920 1.27700 1.39934 0.85299 0.77597 0.79354 0.77941 1.20203 1.22178 1.20187 1.20778 0.95659 0.86896 0.94347 1.22146 0.99911 0.94776 0.99862 1.21164 0.99499 0.95771 0.82989 1.46036 1.57539 1.23878 1.09307 1.21114 0.76480 0.80126 0.92079 1.90676 1.52928 1.55272 1.48003 1.22552 0.99294 1.00008 0.90982 0.85638 1.21782 1.00115 0.94161 0.95858 1.23268 0.92540 1.04660 0.97880 0.85759 1.23534 1.00221 0.92510 1.03226 1.23670 1.01367 0.93261 0.99805 0.85018 1.21913 0.94455 0.99909 0.95860 0.97920 0.96568 0.94866 0.94291 0.93945 0.93386 0.91550 0.92130 0.92608 0.92211 0.74937 0.90750 0.92488 0.86688 0.89932 0.92323 0.88408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.66 8.98 127.77 1.15 9.81 16 2 N -0.62 -31.05 2.92 -726.93 -2.12 -33.17 16 3 C -0.26 -14.40 9.65 84.03 0.81 -13.59 16 4 H 0.07 3.76 7.86 -2.91 -0.02 3.73 16 5 C -0.06 -3.17 5.10 84.86 0.43 -2.74 16 6 N -0.94 -56.18 10.71 21.65 0.23 -55.95 16 7 Si 0.97 44.91 29.57 68.60 2.03 46.93 16 8 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 9 H -0.30 -13.81 7.11 99.48 0.71 -13.10 16 10 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 11 C 0.15 5.92 5.64 86.38 0.49 6.40 16 12 C -0.13 -3.93 5.65 30.59 0.17 -3.76 16 13 C 0.13 3.61 5.67 86.38 0.49 4.10 16 14 N -0.72 -16.38 5.56 -463.05 -2.57 -18.95 16 15 C 0.51 12.88 7.13 87.66 0.63 13.50 16 16 O -0.59 -20.04 15.73 -3.05 -0.05 -20.09 16 17 C -0.11 -1.84 3.29 -10.24 -0.03 -1.88 16 18 H 0.13 1.63 8.14 -2.39 -0.02 1.61 16 19 C -0.08 -1.50 5.70 31.67 0.18 -1.32 16 20 C -0.17 -2.26 6.85 -10.07 -0.07 -2.33 16 21 H 0.12 1.35 8.14 -2.39 -0.02 1.33 16 22 C -0.16 -2.06 10.21 31.45 0.32 -1.74 16 23 C -0.16 -2.00 7.04 -9.22 -0.06 -2.07 16 24 H 0.13 1.18 8.14 -2.39 -0.02 1.16 16 25 C -0.08 -1.19 6.08 31.68 0.19 -1.00 16 26 H 0.00 0.14 7.34 -2.39 -0.02 0.12 16 27 H 0.02 0.84 7.34 -2.38 -0.02 0.82 16 28 H 0.03 1.37 8.03 -2.39 -0.02 1.35 16 29 H 0.25 14.40 8.31 -92.71 -0.77 13.63 16 30 H 0.04 1.71 8.04 -2.38 -0.02 1.69 16 31 H 0.05 1.79 8.07 -2.39 -0.02 1.77 16 32 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 33 H 0.06 1.97 8.14 -2.38 -0.02 1.96 16 34 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 35 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 36 H 0.41 7.19 8.47 -92.71 -0.79 6.40 16 37 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 38 H 0.06 1.34 7.43 -2.39 -0.02 1.32 16 39 H 0.11 1.10 8.14 -2.39 -0.02 1.08 16 40 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 41 H 0.06 1.02 8.04 -2.39 -0.02 1.00 16 42 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 Total: -1.00 -68.71 341.31 2.41 -66.30 By element: Atomic # 1 Polarization: 11.33 SS G_CDS: 0.20 Total: 11.52 kcal Atomic # 6 Polarization: -1.29 SS G_CDS: 4.69 Total: 3.40 kcal Atomic # 7 Polarization: -103.61 SS G_CDS: -4.46 Total: -108.07 kcal Atomic # 8 Polarization: -20.04 SS G_CDS: -0.05 Total: -20.09 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.93 kcal Total: -68.71 2.41 -66.30 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689825324.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.326 kcal (2) G-P(sol) polarization free energy of solvation -68.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds