Wall clock time and date at job start Mon Mar 30 2020 01:26:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36935 * 120.00291 * 2 1 4 4 H 1.08002 * 120.00149 * 200.36440 * 3 2 1 5 5 C 1.38812 * 119.99937 * 20.35275 * 3 2 1 6 6 N 1.31627 * 119.99833 * 14.99739 * 5 3 2 7 7 Si 1.86802 * 120.00128 * 194.98903 * 5 3 2 8 8 H 1.48497 * 109.46904 * 85.00836 * 7 5 3 9 9 H 1.48501 * 109.47110 * 205.00967 * 7 5 3 10 10 H 1.48494 * 109.46960 * 325.00796 * 7 5 3 11 11 C 1.46505 * 119.99603 * 179.97438 * 2 1 3 12 12 C 1.52998 * 109.47272 * 270.00085 * 11 2 1 13 13 C 1.53002 * 109.47177 * 180.02562 * 12 11 2 14 14 N 1.46494 * 109.47074 * 179.97438 * 13 12 11 15 15 C 1.34779 * 120.00034 * 179.97438 * 14 13 12 16 16 O 1.21282 * 119.99824 * 0.02562 * 15 14 13 17 17 C 1.50696 * 119.99896 * 180.02562 * 15 14 13 18 18 C 1.53893 * 113.58600 * 180.02562 * 17 15 14 19 19 C 1.53259 * 86.88227 * 220.34751 * 18 17 15 20 20 C 1.52458 * 128.58657 * 165.10594 * 19 18 17 21 21 C 1.52590 * 128.58304 * 245.00959 * 19 18 17 22 22 C 1.53263 * 87.69303 * 25.08378 * 19 18 17 23 23 H 1.09002 * 109.47577 * 275.09902 * 1 2 3 24 24 H 1.09009 * 109.46926 * 35.10203 * 1 2 3 25 25 H 1.08998 * 109.47360 * 155.09732 * 1 2 3 26 26 H 0.96998 * 119.99817 * 179.97438 * 6 5 3 27 27 H 1.09007 * 109.46786 * 150.00378 * 11 2 1 28 28 H 1.08998 * 109.47305 * 30.00540 * 11 2 1 29 29 H 1.09007 * 109.46976 * 60.00409 * 12 11 2 30 30 H 1.08998 * 109.47327 * 300.00442 * 12 11 2 31 31 H 1.08997 * 109.46888 * 60.00124 * 13 12 11 32 32 H 1.08998 * 109.47269 * 300.00374 * 13 12 11 33 33 H 0.97003 * 120.00013 * 0.02562 * 14 13 12 34 34 H 1.08999 * 112.83288 * 311.11901 * 17 15 14 35 35 H 1.08999 * 113.64949 * 105.85364 * 18 17 15 36 36 H 1.09001 * 113.72994 * 334.85447 * 18 17 15 37 37 H 1.08998 * 117.52099 * 225.05071 * 20 19 18 38 38 H 1.09004 * 117.51179 * 10.11509 * 20 19 18 39 39 H 1.09000 * 117.53457 * 134.98852 * 21 19 18 40 40 H 1.08994 * 117.50563 * 349.86020 * 21 19 18 41 41 H 1.09002 * 113.64785 * 89.41329 * 22 19 18 42 42 H 1.09002 * 113.64108 * 220.42164 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1791 1.2151 -0.3255 5 6 1.5207 2.3505 0.4181 6 7 0.3875 2.2836 1.0844 7 14 2.2825 4.0126 0.0354 8 1 1.8684 4.4459 -1.3232 9 1 1.8224 5.0100 1.0348 10 1 3.7624 3.9032 0.0905 11 6 2.1974 -1.2688 0.0006 12 6 2.4524 -1.7099 1.4432 13 6 3.2179 -3.0347 1.4438 14 7 3.4625 -3.4567 2.8251 15 6 4.1251 -4.6041 3.0719 16 8 4.5191 -5.2870 2.1504 17 6 4.3762 -5.0385 4.4929 18 6 5.1443 -6.3674 4.6040 19 6 4.2028 -6.7183 5.7613 20 6 3.9608 -8.0756 6.4121 21 6 4.5414 -6.9222 7.2351 22 6 3.1806 -5.7613 5.1382 23 1 -0.3634 0.0913 1.0236 24 1 -0.3633 0.8408 -0.5910 25 1 -0.3634 -0.9321 -0.4327 26 1 -0.0519 3.0974 1.3769 27 1 3.1499 -1.1387 -0.5133 28 1 1.6084 -2.0286 -0.5130 29 1 1.4999 -1.8400 1.9571 30 1 3.0414 -0.9501 1.9568 31 1 4.1703 -2.9041 0.9301 32 1 2.6292 -3.7947 0.9301 33 1 3.1470 -2.9106 3.5622 34 1 4.7907 -4.2425 5.1115 35 1 6.1842 -6.2474 4.9075 36 1 5.0286 -7.0149 3.7347 37 1 2.9278 -8.3635 6.6074 38 1 4.6331 -8.8902 6.1427 39 1 3.8902 -6.4514 7.9715 40 1 5.5956 -6.9779 7.5064 41 1 2.5174 -6.2389 4.4170 42 1 2.6466 -5.1552 5.8701 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001689838819.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:24 Heat of formation + Delta-G solvation = 23.185342 kcal Electronic energy + Delta-G solvation = -19668.520762 eV Core-core repulsion = 16650.541136 eV Total energy + Delta-G solvation = -3017.979626 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.50398 -38.50530 -36.21669 -34.69096 -33.81933 -31.92566 -29.96653 -26.26365 -25.98130 -25.73479 -23.99551 -22.74242 -21.73979 -20.61658 -19.74259 -18.60578 -17.11962 -16.75248 -15.94992 -15.78937 -15.34732 -15.08028 -14.74673 -14.30764 -13.93757 -13.37078 -13.03685 -12.84102 -12.71710 -12.47706 -12.23079 -11.83025 -11.78878 -11.53912 -11.29680 -11.05855 -10.83194 -10.73686 -10.60843 -10.54854 -10.46929 -10.09337 -9.97840 -9.90019 -9.77260 -9.56092 -8.88446 -8.54368 -6.79085 -5.72864 -3.16372 2.68607 3.25083 3.38671 3.44931 3.45687 3.53436 4.06633 4.30184 4.43998 4.50565 4.54482 4.62835 5.03250 5.11688 5.30622 5.33200 5.38992 5.44224 5.49067 5.54321 5.55121 5.56752 5.74430 5.83155 5.86452 5.95311 5.98645 6.09839 6.14252 6.26947 6.44604 6.65437 6.75737 6.83513 7.01454 7.37880 7.64787 7.71631 7.81114 8.32816 8.39194 9.23692 9.87882 10.36011 11.32402 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.033626 B = 0.002938 C = 0.002896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 832.489677 B = 9527.042827 C = 9665.034268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.163 3.837 2 N -0.603 5.603 3 C -0.253 4.253 4 H 0.069 0.931 5 C -0.001 4.001 6 N -0.908 5.908 7 Si 0.904 3.096 8 H -0.288 1.288 9 H -0.292 1.292 10 H -0.280 1.280 11 C 0.156 3.844 12 C -0.150 4.150 13 C 0.119 3.881 14 N -0.724 5.724 15 C 0.518 3.482 16 O -0.547 6.547 17 C -0.133 4.133 18 C -0.075 4.075 19 C -0.164 4.164 20 C -0.166 4.166 21 C -0.152 4.152 22 C -0.081 4.081 23 H 0.028 0.972 24 H 0.043 0.957 25 H -0.002 1.002 26 H 0.252 0.748 27 H 0.045 0.955 28 H 0.039 0.961 29 H 0.059 0.941 30 H 0.068 0.932 31 H 0.063 0.937 32 H 0.061 0.939 33 H 0.401 0.599 34 H 0.113 0.887 35 H 0.071 0.929 36 H 0.099 0.901 37 H 0.095 0.905 38 H 0.095 0.905 39 H 0.096 0.904 40 H 0.096 0.904 41 H 0.089 0.911 42 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.822 -16.767 10.784 20.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.325 5.325 3 C -0.383 4.383 4 H 0.087 0.913 5 C -0.199 4.199 6 N -0.554 5.554 7 Si 0.734 3.266 8 H -0.215 1.215 9 H -0.218 1.218 10 H -0.206 1.206 11 C 0.028 3.972 12 C -0.191 4.191 13 C -0.005 4.005 14 N -0.374 5.374 15 C 0.304 3.696 16 O -0.425 6.425 17 C -0.154 4.154 18 C -0.112 4.112 19 C -0.164 4.164 20 C -0.203 4.203 21 C -0.188 4.188 22 C -0.119 4.119 23 H 0.047 0.953 24 H 0.061 0.939 25 H 0.016 0.984 26 H 0.062 0.938 27 H 0.064 0.936 28 H 0.057 0.943 29 H 0.078 0.922 30 H 0.087 0.913 31 H 0.081 0.919 32 H 0.079 0.921 33 H 0.235 0.765 34 H 0.131 0.869 35 H 0.090 0.910 36 H 0.117 0.883 37 H 0.113 0.887 38 H 0.113 0.887 39 H 0.114 0.886 40 H 0.114 0.886 41 H 0.108 0.892 42 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 5.975 -17.083 10.134 20.742 hybrid contribution 0.151 1.359 0.393 1.423 sum 6.126 -15.724 10.528 19.890 Atomic orbital electron populations 1.20800 0.82523 0.95516 0.99377 1.44011 1.01970 1.00748 1.85813 1.19232 0.96985 0.85025 1.37041 0.91289 1.24974 0.97917 0.98374 0.98626 1.70088 1.18887 1.26759 1.39647 0.86274 0.78627 0.84016 0.77645 1.21469 1.21798 1.20584 1.20713 0.95967 0.88179 0.92330 1.22548 0.99592 0.94054 1.02878 1.21503 1.00211 0.97053 0.81754 1.46201 1.57683 1.23729 1.09836 1.20449 0.77512 0.80705 0.90897 1.90673 1.51426 1.54085 1.46273 1.22624 1.00109 0.98770 0.93929 1.22372 0.97382 0.94721 0.96775 1.22192 1.00405 0.99328 0.94481 1.22799 1.02056 0.91592 1.03839 1.22812 1.01782 1.02188 0.92063 1.22396 0.94751 0.95917 0.98811 0.95345 0.93866 0.98359 0.93797 0.93624 0.94275 0.92194 0.91329 0.91865 0.92053 0.76502 0.86899 0.91047 0.88267 0.88687 0.88673 0.88551 0.88580 0.89216 0.90516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.01 9.02 59.85 0.54 4.55 16 2 N -0.60 -15.15 2.93 -181.11 -0.53 -15.68 16 3 C -0.25 -6.94 9.68 -15.06 -0.15 -7.09 16 4 H 0.07 1.85 7.86 -52.49 -0.41 1.44 16 5 C 0.00 -0.03 5.06 -17.43 -0.09 -0.11 16 6 N -0.91 -26.36 10.67 55.49 0.59 -25.77 16 7 Si 0.90 21.83 29.58 -169.99 -5.03 16.80 16 8 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 9 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 10 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 11 C 0.16 3.15 5.71 -4.04 -0.02 3.13 16 12 C -0.15 -2.64 5.65 -26.73 -0.15 -2.79 16 13 C 0.12 1.81 5.67 -4.04 -0.02 1.78 16 14 N -0.72 -9.63 5.56 -60.30 -0.33 -9.96 16 15 C 0.52 7.12 7.36 -10.99 -0.08 7.04 16 16 O -0.55 -9.55 15.90 5.56 0.09 -9.46 16 17 C -0.13 -1.35 4.14 -90.85 -0.38 -1.73 16 18 C -0.07 -0.75 7.42 -26.13 -0.19 -0.94 16 19 C -0.16 -1.41 3.09 -154.73 -0.48 -1.89 16 20 C -0.17 -1.25 10.52 -26.95 -0.28 -1.53 16 21 C -0.15 -1.08 10.54 -26.88 -0.28 -1.37 16 22 C -0.08 -0.73 7.65 -26.13 -0.20 -0.93 16 23 H 0.03 0.75 7.40 -51.93 -0.38 0.36 16 24 H 0.04 1.14 7.21 -51.92 -0.37 0.77 16 25 H 0.00 -0.05 7.84 -51.93 -0.41 -0.45 16 26 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 27 H 0.05 0.90 8.03 -51.93 -0.42 0.49 16 28 H 0.04 0.73 7.86 -51.93 -0.41 0.32 16 29 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 30 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16 31 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 32 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.40 4.54 8.47 -40.82 -0.35 4.19 16 34 H 0.11 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 36 H 0.10 1.15 7.43 -51.93 -0.39 0.76 16 37 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 39 H 0.10 0.62 8.14 -51.93 -0.42 0.19 16 40 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.09 0.88 8.09 -51.93 -0.42 0.46 16 42 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 LS Contribution 345.53 15.07 5.21 5.21 Total: -1.00 -31.45 345.53 -9.13 -40.58 By element: Atomic # 1 Polarization: 7.49 SS G_CDS: -7.34 Total: 0.15 kcal Atomic # 6 Polarization: -0.09 SS G_CDS: -1.79 Total: -1.88 kcal Atomic # 7 Polarization: -51.13 SS G_CDS: -0.27 Total: -51.41 kcal Atomic # 8 Polarization: -9.55 SS G_CDS: 0.09 Total: -9.46 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.03 Total: 16.80 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -31.45 -9.13 -40.58 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689838819.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.770 kcal (2) G-P(sol) polarization free energy of solvation -31.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.585 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds