Wall clock time and date at job start Mon Mar 30 2020 01:26:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36935 * 120.00291 * 2 1 4 4 H 1.08002 * 120.00149 * 200.36440 * 3 2 1 5 5 C 1.38812 * 119.99937 * 20.35275 * 3 2 1 6 6 N 1.31627 * 119.99833 * 14.99739 * 5 3 2 7 7 Si 1.86802 * 120.00128 * 194.98903 * 5 3 2 8 8 H 1.48497 * 109.46904 * 85.00836 * 7 5 3 9 9 H 1.48501 * 109.47110 * 205.00967 * 7 5 3 10 10 H 1.48494 * 109.46960 * 325.00796 * 7 5 3 11 11 C 1.46505 * 119.99603 * 179.97438 * 2 1 3 12 12 C 1.52998 * 109.47272 * 270.00085 * 11 2 1 13 13 C 1.53002 * 109.47177 * 180.02562 * 12 11 2 14 14 N 1.46494 * 109.47074 * 179.97438 * 13 12 11 15 15 C 1.34779 * 120.00034 * 179.97438 * 14 13 12 16 16 O 1.21282 * 119.99824 * 0.02562 * 15 14 13 17 17 C 1.50696 * 119.99896 * 180.02562 * 15 14 13 18 18 C 1.53893 * 113.58600 * 180.02562 * 17 15 14 19 19 C 1.53259 * 86.88227 * 220.34751 * 18 17 15 20 20 C 1.52458 * 128.58657 * 165.10594 * 19 18 17 21 21 C 1.52590 * 128.58304 * 245.00959 * 19 18 17 22 22 C 1.53263 * 87.69303 * 25.08378 * 19 18 17 23 23 H 1.09002 * 109.47577 * 275.09902 * 1 2 3 24 24 H 1.09009 * 109.46926 * 35.10203 * 1 2 3 25 25 H 1.08998 * 109.47360 * 155.09732 * 1 2 3 26 26 H 0.96998 * 119.99817 * 179.97438 * 6 5 3 27 27 H 1.09007 * 109.46786 * 150.00378 * 11 2 1 28 28 H 1.08998 * 109.47305 * 30.00540 * 11 2 1 29 29 H 1.09007 * 109.46976 * 60.00409 * 12 11 2 30 30 H 1.08998 * 109.47327 * 300.00442 * 12 11 2 31 31 H 1.08997 * 109.46888 * 60.00124 * 13 12 11 32 32 H 1.08998 * 109.47269 * 300.00374 * 13 12 11 33 33 H 0.97003 * 120.00013 * 0.02562 * 14 13 12 34 34 H 1.08999 * 112.83288 * 311.11901 * 17 15 14 35 35 H 1.08999 * 113.64949 * 105.85364 * 18 17 15 36 36 H 1.09001 * 113.72994 * 334.85447 * 18 17 15 37 37 H 1.08998 * 117.52099 * 225.05071 * 20 19 18 38 38 H 1.09004 * 117.51179 * 10.11509 * 20 19 18 39 39 H 1.09000 * 117.53457 * 134.98852 * 21 19 18 40 40 H 1.08994 * 117.50563 * 349.86020 * 21 19 18 41 41 H 1.09002 * 113.64785 * 89.41329 * 22 19 18 42 42 H 1.09002 * 113.64108 * 220.42164 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1791 1.2151 -0.3255 5 6 1.5207 2.3505 0.4181 6 7 0.3875 2.2836 1.0844 7 14 2.2825 4.0126 0.0354 8 1 1.8684 4.4459 -1.3232 9 1 1.8224 5.0100 1.0348 10 1 3.7624 3.9032 0.0905 11 6 2.1974 -1.2688 0.0006 12 6 2.4524 -1.7099 1.4432 13 6 3.2179 -3.0347 1.4438 14 7 3.4625 -3.4567 2.8251 15 6 4.1251 -4.6041 3.0719 16 8 4.5191 -5.2870 2.1504 17 6 4.3762 -5.0385 4.4929 18 6 5.1443 -6.3674 4.6040 19 6 4.2028 -6.7183 5.7613 20 6 3.9608 -8.0756 6.4121 21 6 4.5414 -6.9222 7.2351 22 6 3.1806 -5.7613 5.1382 23 1 -0.3634 0.0913 1.0236 24 1 -0.3633 0.8408 -0.5910 25 1 -0.3634 -0.9321 -0.4327 26 1 -0.0519 3.0974 1.3769 27 1 3.1499 -1.1387 -0.5133 28 1 1.6084 -2.0286 -0.5130 29 1 1.4999 -1.8400 1.9571 30 1 3.0414 -0.9501 1.9568 31 1 4.1703 -2.9041 0.9301 32 1 2.6292 -3.7947 0.9301 33 1 3.1470 -2.9106 3.5622 34 1 4.7907 -4.2425 5.1115 35 1 6.1842 -6.2474 4.9075 36 1 5.0286 -7.0149 3.7347 37 1 2.9278 -8.3635 6.6074 38 1 4.6331 -8.8902 6.1427 39 1 3.8902 -6.4514 7.9715 40 1 5.5956 -6.9779 7.5064 41 1 2.5174 -6.2389 4.4170 42 1 2.6466 -5.1552 5.8701 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001689838819.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:23 Heat of formation + Delta-G solvation = 4.759337 kcal Electronic energy + Delta-G solvation = -19669.319773 eV Core-core repulsion = 16650.541136 eV Total energy + Delta-G solvation = -3018.778637 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.41950 -39.44397 -37.92993 -36.15241 -34.55476 -33.69156 -31.66403 -27.99480 -27.44330 -26.72224 -25.26316 -23.37973 -23.19449 -22.15096 -20.96345 -19.30175 -18.76150 -18.11717 -17.20092 -16.78294 -16.61808 -16.16432 -15.99072 -15.58784 -15.43818 -14.90046 -14.71908 -14.49628 -13.61476 -13.41352 -13.32399 -13.09789 -12.93994 -12.79048 -12.73172 -12.50391 -12.41030 -12.30915 -12.27112 -12.02243 -11.84622 -11.47224 -11.32776 -11.24910 -10.75930 -10.62892 -10.49769 -10.07682 -8.82210 -7.82572 -5.28271 1.47117 1.49043 1.56666 1.60750 2.22603 2.52347 2.86366 3.31185 3.39935 3.55114 3.66198 3.67416 3.88497 3.93706 4.11753 4.18184 4.35105 4.40607 4.49864 4.65693 4.75659 4.78796 4.80243 4.81804 4.83949 4.88017 4.91785 5.01153 5.05280 5.25722 5.29694 5.30768 5.31599 5.33846 5.42496 5.51247 5.64710 5.72695 6.32999 6.57686 7.15675 7.24790 7.88379 8.31080 9.21072 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.033626 B = 0.002938 C = 0.002896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 832.489677 B = 9527.042827 C = 9665.034268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.175 3.825 2 N -0.621 5.621 3 C -0.262 4.262 4 H 0.071 0.929 5 C -0.054 4.054 6 N -0.937 5.937 7 Si 0.967 3.033 8 H -0.287 1.287 9 H -0.295 1.295 10 H -0.270 1.270 11 C 0.150 3.850 12 C -0.128 4.128 13 C 0.131 3.869 14 N -0.719 5.719 15 C 0.517 3.483 16 O -0.588 6.588 17 C -0.128 4.128 18 C -0.079 4.079 19 C -0.174 4.174 20 C -0.169 4.169 21 C -0.139 4.139 22 C -0.077 4.077 23 H 0.006 0.994 24 H 0.015 0.985 25 H 0.031 0.969 26 H 0.248 0.752 27 H 0.048 0.952 28 H 0.059 0.941 29 H 0.055 0.945 30 H 0.050 0.950 31 H 0.057 0.943 32 H 0.062 0.938 33 H 0.412 0.588 34 H 0.135 0.865 35 H 0.079 0.921 36 H 0.076 0.924 37 H 0.101 0.899 38 H 0.097 0.903 39 H 0.107 0.893 40 H 0.104 0.896 41 H 0.077 0.923 42 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.557 -17.337 11.914 22.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.344 5.344 3 C -0.392 4.392 4 H 0.089 0.911 5 C -0.249 4.249 6 N -0.584 5.584 7 Si 0.795 3.205 8 H -0.214 1.214 9 H -0.221 1.221 10 H -0.195 1.195 11 C 0.024 3.976 12 C -0.169 4.169 13 C 0.007 3.993 14 N -0.370 5.370 15 C 0.305 3.695 16 O -0.468 6.468 17 C -0.149 4.149 18 C -0.117 4.117 19 C -0.174 4.174 20 C -0.205 4.205 21 C -0.176 4.176 22 C -0.115 4.115 23 H 0.024 0.976 24 H 0.034 0.966 25 H 0.050 0.950 26 H 0.057 0.943 27 H 0.067 0.933 28 H 0.077 0.923 29 H 0.074 0.926 30 H 0.069 0.931 31 H 0.076 0.924 32 H 0.081 0.919 33 H 0.248 0.752 34 H 0.153 0.847 35 H 0.098 0.902 36 H 0.095 0.905 37 H 0.119 0.881 38 H 0.116 0.884 39 H 0.126 0.874 40 H 0.122 0.878 41 H 0.095 0.905 42 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 6.726 -17.672 11.280 22.018 hybrid contribution -0.060 1.445 0.007 1.446 sum 6.666 -16.227 11.287 20.860 Atomic orbital electron populations 1.20569 0.82684 0.95986 0.97752 1.44249 1.02261 1.01813 1.86046 1.19536 0.97165 0.86232 1.36237 0.91141 1.25716 0.98649 1.01570 0.99001 1.70241 1.20193 1.27116 1.40890 0.85286 0.78299 0.79875 0.77011 1.21394 1.22142 1.19475 1.20894 0.95962 0.86793 0.93988 1.22188 0.99333 0.94668 1.00708 1.21204 0.99485 0.95637 0.82994 1.46112 1.57533 1.23925 1.09382 1.21085 0.76407 0.79960 0.92066 1.90655 1.53058 1.55230 1.47885 1.22707 1.01102 0.99400 0.91654 1.22327 0.98258 0.94341 0.96765 1.22131 0.99683 1.00429 0.95129 1.22899 1.02630 0.91418 1.03594 1.22922 1.02540 1.01140 0.90983 1.22359 0.94368 0.95977 0.98756 0.97593 0.96599 0.95031 0.94325 0.93336 0.92264 0.92617 0.93095 0.92418 0.91932 0.75168 0.84701 0.90245 0.90502 0.88111 0.88416 0.87427 0.87753 0.90458 0.88817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.63 9.02 127.77 1.15 9.78 16 2 N -0.62 -30.91 2.93 -726.91 -2.13 -33.04 16 3 C -0.26 -14.28 9.68 84.03 0.81 -13.47 16 4 H 0.07 3.75 7.86 -2.91 -0.02 3.72 16 5 C -0.05 -3.03 5.06 84.86 0.43 -2.61 16 6 N -0.94 -55.04 10.67 21.65 0.23 -54.81 16 7 Si 0.97 44.92 29.58 68.60 2.03 46.95 16 8 H -0.29 -13.21 7.11 99.48 0.71 -12.50 16 9 H -0.29 -13.75 7.11 99.48 0.71 -13.05 16 10 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 11 C 0.15 5.88 5.71 86.38 0.49 6.38 16 12 C -0.13 -4.41 5.65 30.59 0.17 -4.23 16 13 C 0.13 3.86 5.67 86.38 0.49 4.35 16 14 N -0.72 -18.21 5.56 -463.08 -2.57 -20.78 16 15 C 0.52 13.74 7.36 87.66 0.65 14.39 16 16 O -0.59 -20.48 15.90 -3.04 -0.05 -20.53 16 17 C -0.13 -2.39 4.14 -10.94 -0.05 -2.43 16 18 C -0.08 -1.50 7.42 30.98 0.23 -1.27 16 19 C -0.17 -2.67 3.09 -52.32 -0.16 -2.83 16 20 C -0.17 -2.21 10.52 30.45 0.32 -1.89 16 21 C -0.14 -1.60 10.54 30.50 0.32 -1.28 16 22 C -0.08 -1.25 7.65 30.98 0.24 -1.01 16 23 H 0.01 0.31 7.40 -2.39 -0.02 0.29 16 24 H 0.02 0.83 7.21 -2.38 -0.02 0.81 16 25 H 0.03 1.31 7.84 -2.39 -0.02 1.29 16 26 H 0.25 14.15 8.31 -92.71 -0.77 13.38 16 27 H 0.05 1.87 8.03 -2.38 -0.02 1.85 16 28 H 0.06 2.08 7.86 -2.39 -0.02 2.06 16 29 H 0.06 1.96 8.14 -2.38 -0.02 1.95 16 30 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 31 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 32 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 33 H 0.41 8.65 8.47 -92.71 -0.79 7.86 16 34 H 0.14 1.95 8.14 -2.39 -0.02 1.93 16 35 H 0.08 1.33 8.14 -2.39 -0.02 1.32 16 36 H 0.08 1.80 7.43 -2.39 -0.02 1.78 16 37 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 38 H 0.10 1.22 8.14 -2.38 -0.02 1.20 16 39 H 0.11 1.02 8.14 -2.39 -0.02 1.00 16 40 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 41 H 0.08 1.45 8.09 -2.39 -0.02 1.43 16 42 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 Total: -1.00 -67.17 345.53 2.81 -64.36 By element: Atomic # 1 Polarization: 13.78 SS G_CDS: 0.20 Total: 13.98 kcal Atomic # 6 Polarization: -1.22 SS G_CDS: 5.10 Total: 3.88 kcal Atomic # 7 Polarization: -104.16 SS G_CDS: -4.47 Total: -108.63 kcal Atomic # 8 Polarization: -20.48 SS G_CDS: -0.05 Total: -20.53 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.95 kcal Total: -67.17 2.81 -64.36 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689838819.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.116 kcal (2) G-P(sol) polarization free energy of solvation -67.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.357 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds