Wall clock time and date at job start Mon Mar 30 2020 00:46:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46503 * 109.47427 * 2 1 4 4 C 1.36935 * 120.00434 * 85.03081 * 3 2 1 5 5 H 1.08001 * 120.00443 * 209.81934 * 4 3 2 6 6 C 1.38813 * 119.99600 * 29.81979 * 4 3 2 7 7 N 1.31622 * 119.99830 * 40.66113 * 6 4 3 8 8 Si 1.86802 * 120.00067 * 220.65561 * 6 4 3 9 9 H 1.48503 * 109.46970 * 180.02562 * 8 6 4 10 10 H 1.48496 * 109.46947 * 60.00516 * 8 6 4 11 11 H 1.48493 * 109.47141 * 300.00400 * 8 6 4 12 12 C 1.46501 * 119.99748 * 265.04007 * 3 2 1 13 13 C 1.53000 * 109.46993 * 269.99436 * 12 3 2 14 14 N 1.46494 * 109.47391 * 179.97438 * 13 12 3 15 15 C 1.34775 * 120.00161 * 179.97438 * 14 13 12 16 16 O 1.21280 * 119.99909 * 0.02562 * 15 14 13 17 17 C 1.50706 * 120.00051 * 179.97438 * 15 14 13 18 18 H 1.09001 * 115.52318 * 34.43038 * 17 15 14 19 19 C 1.53001 * 117.45968 * 179.97438 * 17 15 14 20 20 H 1.09004 * 119.30183 * 356.29315 * 19 17 15 21 21 C 1.54267 * 118.19629 * 201.22049 * 19 17 15 22 22 C 1.54824 * 104.20857 * 272.19684 * 21 19 17 23 23 C 1.54889 * 102.74852 * 37.92148 * 22 21 19 24 24 C 1.52995 * 117.46290 * 248.92332 * 17 15 14 25 25 H 1.09003 * 119.30043 * 3.71520 * 24 17 15 26 26 H 1.09003 * 109.46892 * 60.00142 * 1 2 3 27 27 H 1.08997 * 109.47576 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.47051 * 300.00442 * 1 2 3 29 29 H 1.08998 * 109.47431 * 239.99591 * 2 1 3 30 30 H 1.09003 * 109.46892 * 119.99858 * 2 1 3 31 31 H 0.96996 * 120.00185 * 5.83674 * 7 6 4 32 32 H 1.08997 * 109.47342 * 29.99161 * 12 3 2 33 33 H 1.09003 * 109.47139 * 149.99818 * 12 3 2 34 34 H 1.08999 * 109.47207 * 300.00707 * 13 12 3 35 35 H 1.09003 * 109.46867 * 60.00215 * 13 12 3 36 36 H 0.97002 * 119.99748 * 0.02562 * 14 13 12 37 37 H 1.08996 * 110.48790 * 30.88605 * 21 19 17 38 38 H 1.09005 * 110.48543 * 153.53405 * 21 19 17 39 39 H 1.09003 * 110.73228 * 279.61646 * 22 21 19 40 40 H 1.08998 * 110.93644 * 156.32035 * 22 21 19 41 41 H 1.08994 * 110.48624 * 203.40826 * 23 22 21 42 42 H 1.08998 * 110.59728 * 80.81501 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1498 2.0611 1.1814 5 1 2.0323 3.1344 1.2028 6 6 2.4342 1.3705 2.3515 7 7 3.3025 0.3814 2.3374 8 14 1.5849 1.8452 3.9461 9 1 2.0591 0.9617 5.0415 10 1 0.1161 1.6942 3.7885 11 1 1.9048 3.2572 4.2760 12 6 2.3660 2.0352 -1.2640 13 6 3.8419 1.7839 -1.5792 14 7 4.1895 2.4372 -2.8435 15 6 5.4458 2.3508 -3.3237 16 8 6.2885 1.7317 -2.7094 17 6 5.8031 3.0225 -4.6246 18 1 5.2898 3.9632 -4.8240 19 6 7.2460 2.8876 -5.1152 20 1 7.9757 2.3717 -4.4910 21 6 7.7725 3.9273 -6.1260 22 6 7.3850 3.3447 -7.5071 23 6 5.9925 2.7226 -7.2371 24 6 6.1158 2.1218 -5.8211 25 1 6.0127 1.0417 -5.7171 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 3.8059 0.1894 1.5309 32 1 1.7490 1.6285 -2.0653 33 1 2.1902 3.1076 -1.1787 34 1 4.4590 2.1904 -0.7780 35 1 4.0177 0.7115 -1.6646 36 1 3.5155 2.9327 -3.3346 37 1 7.2883 4.8911 -5.9690 38 1 8.8550 4.0252 -6.0437 39 1 8.0967 2.5792 -7.8164 40 1 7.3172 4.1327 -8.2571 41 1 5.7759 1.9414 -7.9657 42 1 5.2186 3.4899 -7.2605 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691013852.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:46:09 Heat of formation + Delta-G solvation = -5.346799 kcal Electronic energy + Delta-G solvation = -20111.556222 eV Core-core repulsion = 17092.339350 eV Total energy + Delta-G solvation = -3019.216872 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.35427 -38.35017 -36.44119 -34.31279 -32.02240 -31.47364 -30.15295 -28.47663 -27.38619 -24.49109 -23.49372 -22.13183 -20.88915 -20.30350 -19.89352 -19.70427 -17.51627 -17.02733 -15.89342 -15.28083 -15.08426 -14.82342 -14.23060 -14.09903 -13.63758 -13.47519 -13.40973 -13.07825 -12.75165 -12.53309 -12.20728 -11.69820 -11.51392 -11.39767 -11.31432 -11.11403 -10.97487 -10.83643 -10.63987 -10.45310 -10.24640 -10.03378 -10.01192 -9.98277 -9.58268 -9.49957 -8.64734 -8.25267 -6.94761 -6.18127 -3.24776 2.62702 3.32214 3.49922 3.55033 3.64898 3.72546 4.35336 4.50268 4.53553 4.61522 4.95014 5.00271 5.06827 5.16121 5.17992 5.22263 5.35220 5.45420 5.46538 5.57157 5.75008 5.79902 5.81496 5.85969 5.95457 6.06113 6.10139 6.18233 6.21047 6.41264 6.48761 6.63234 6.67549 6.71845 6.93127 7.09993 7.30472 7.81402 8.08489 8.51180 8.53322 9.06493 9.80203 10.25194 11.04591 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.035543 B = 0.003477 C = 0.003320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.583034 B = 8050.628255 C = 8431.334207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.134 3.866 3 N -0.585 5.585 4 C -0.376 4.376 5 H 0.055 0.945 6 C -0.007 4.007 7 N -0.878 5.878 8 Si 1.045 2.955 9 H -0.286 1.286 10 H -0.292 1.292 11 H -0.291 1.291 12 C 0.140 3.860 13 C 0.096 3.904 14 N -0.720 5.720 15 C 0.535 3.465 16 O -0.542 6.542 17 C -0.160 4.160 18 H 0.118 0.882 19 C -0.132 4.132 20 H 0.122 0.878 21 C -0.097 4.097 22 C -0.123 4.123 23 C -0.095 4.095 24 C -0.141 4.141 25 H 0.113 0.887 26 H 0.036 0.964 27 H 0.036 0.964 28 H 0.055 0.945 29 H 0.028 0.972 30 H 0.071 0.929 31 H 0.271 0.729 32 H 0.040 0.960 33 H 0.049 0.951 34 H 0.068 0.932 35 H 0.055 0.945 36 H 0.396 0.604 37 H 0.069 0.931 38 H 0.072 0.928 39 H 0.069 0.931 40 H 0.069 0.931 41 H 0.072 0.928 42 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.032 5.421 -18.893 19.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.008 3.992 3 N -0.307 5.307 4 C -0.504 4.504 5 H 0.072 0.928 6 C -0.213 4.213 7 N -0.514 5.514 8 Si 0.875 3.125 9 H -0.212 1.212 10 H -0.219 1.219 11 H -0.218 1.218 12 C 0.013 3.987 13 C -0.029 4.029 14 N -0.370 5.370 15 C 0.320 3.680 16 O -0.420 6.420 17 C -0.181 4.181 18 H 0.136 0.864 19 C -0.151 4.151 20 H 0.140 0.860 21 C -0.134 4.134 22 C -0.161 4.161 23 C -0.133 4.133 24 C -0.160 4.160 25 H 0.131 0.869 26 H 0.055 0.945 27 H 0.055 0.945 28 H 0.074 0.926 29 H 0.047 0.953 30 H 0.088 0.912 31 H 0.081 0.919 32 H 0.058 0.942 33 H 0.068 0.932 34 H 0.087 0.913 35 H 0.073 0.927 36 H 0.229 0.771 37 H 0.088 0.912 38 H 0.091 0.909 39 H 0.088 0.912 40 H 0.088 0.912 41 H 0.090 0.910 42 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 3.453 4.540 -16.795 17.738 hybrid contribution -0.175 0.701 -1.725 1.870 sum 3.279 5.242 -18.520 19.524 Atomic orbital electron populations 1.22172 0.99524 0.98946 1.01084 1.20882 0.91904 0.86234 1.00152 1.43986 1.72922 1.12110 1.01651 1.19696 1.51418 0.93262 0.86055 0.92755 1.25712 0.96353 0.98276 1.00977 1.70793 1.16855 1.33706 1.30026 0.83831 0.76628 0.75650 0.76435 1.21214 1.21929 1.21833 1.21089 0.90496 0.97568 0.89558 1.22481 1.00187 0.96865 0.83415 1.46102 1.10769 1.54890 1.25282 1.19599 0.82543 0.80381 0.85442 1.90705 1.48714 1.42560 1.59989 1.22405 1.00691 1.01443 0.93600 0.86400 1.23222 0.90336 1.00906 1.00631 0.86047 1.21986 1.01010 0.97453 0.92949 1.22684 0.96559 0.99947 0.96885 1.22002 0.97444 0.99862 0.93978 1.23219 1.03948 0.98041 0.90762 0.86865 0.94499 0.94501 0.92572 0.95335 0.91153 0.91882 0.94201 0.93235 0.91326 0.92659 0.77114 0.91241 0.90885 0.91180 0.91226 0.90952 0.91156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.18 10.21 37.16 0.38 -2.80 16 2 C 0.13 3.09 5.90 -4.04 -0.02 3.06 16 3 N -0.59 -14.23 2.36 -173.24 -0.41 -14.64 16 4 C -0.38 -10.32 9.25 -15.06 -0.14 -10.45 16 5 H 0.05 1.53 8.06 -52.49 -0.42 1.10 16 6 C -0.01 -0.19 4.52 -17.43 -0.08 -0.27 16 7 N -0.88 -26.02 12.21 55.49 0.68 -25.35 16 8 Si 1.05 24.97 30.06 -169.99 -5.11 19.86 16 9 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 10 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 11 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 12 C 0.14 2.82 5.76 -4.04 -0.02 2.80 16 13 C 0.10 1.93 6.00 -4.05 -0.02 1.91 16 14 N -0.72 -11.44 5.56 -60.30 -0.33 -11.77 16 15 C 0.54 8.94 7.61 -10.98 -0.08 8.85 16 16 O -0.54 -11.56 16.32 5.56 0.09 -11.47 16 17 C -0.16 -1.95 5.74 -91.77 -0.53 -2.47 16 18 H 0.12 1.17 8.14 -51.93 -0.42 0.75 16 19 C -0.13 -1.52 6.39 -89.60 -0.57 -2.09 16 20 H 0.12 1.63 7.78 -51.93 -0.40 1.22 16 21 C -0.10 -0.82 6.62 -25.11 -0.17 -0.99 16 22 C -0.12 -0.89 6.90 -24.77 -0.17 -1.06 16 23 C -0.10 -0.75 6.63 -25.05 -0.17 -0.92 16 24 C -0.14 -1.51 6.63 -89.58 -0.59 -2.10 16 25 H 0.11 1.32 8.14 -51.93 -0.42 0.89 16 26 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 28 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 29 H 0.03 0.60 8.03 -51.93 -0.42 0.18 16 30 H 0.07 1.83 5.70 -51.93 -0.30 1.54 16 31 H 0.27 8.21 8.11 -40.82 -0.33 7.88 16 32 H 0.04 0.71 8.07 -51.93 -0.42 0.29 16 33 H 0.05 0.98 8.04 -51.93 -0.42 0.56 16 34 H 0.07 1.63 8.14 -51.93 -0.42 1.21 16 35 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 36 H 0.40 4.90 8.47 -40.82 -0.35 4.56 16 37 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 38 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 42 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 LS Contribution 344.12 15.07 5.19 5.19 Total: -1.00 -31.73 344.12 -9.43 -41.17 By element: Atomic # 1 Polarization: 10.90 SS G_CDS: -7.35 Total: 3.55 kcal Atomic # 6 Polarization: -4.35 SS G_CDS: -2.19 Total: -6.54 kcal Atomic # 7 Polarization: -51.69 SS G_CDS: -0.07 Total: -51.76 kcal Atomic # 8 Polarization: -11.56 SS G_CDS: 0.09 Total: -11.47 kcal Atomic # 14 Polarization: 24.97 SS G_CDS: -5.11 Total: 19.86 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -31.73 -9.43 -41.17 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691013852.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.820 kcal (2) G-P(sol) polarization free energy of solvation -31.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds