Wall clock time and date at job start Mon Mar 30 2020 00:46:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46503 * 109.47427 * 2 1 4 4 C 1.36935 * 120.00434 * 85.03081 * 3 2 1 5 5 H 1.08001 * 120.00443 * 209.81934 * 4 3 2 6 6 C 1.38813 * 119.99600 * 29.81979 * 4 3 2 7 7 N 1.31622 * 119.99830 * 40.66113 * 6 4 3 8 8 Si 1.86802 * 120.00067 * 220.65561 * 6 4 3 9 9 H 1.48503 * 109.46970 * 180.02562 * 8 6 4 10 10 H 1.48496 * 109.46947 * 60.00516 * 8 6 4 11 11 H 1.48493 * 109.47141 * 300.00400 * 8 6 4 12 12 C 1.46501 * 119.99748 * 265.04007 * 3 2 1 13 13 C 1.53000 * 109.46993 * 269.99436 * 12 3 2 14 14 N 1.46494 * 109.47391 * 179.97438 * 13 12 3 15 15 C 1.34775 * 120.00161 * 179.97438 * 14 13 12 16 16 O 1.21280 * 119.99909 * 0.02562 * 15 14 13 17 17 C 1.50706 * 120.00051 * 179.97438 * 15 14 13 18 18 H 1.09001 * 115.52318 * 34.43038 * 17 15 14 19 19 C 1.53001 * 117.45968 * 179.97438 * 17 15 14 20 20 H 1.09004 * 119.30183 * 356.29315 * 19 17 15 21 21 C 1.54267 * 118.19629 * 201.22049 * 19 17 15 22 22 C 1.54824 * 104.20857 * 272.19684 * 21 19 17 23 23 C 1.54889 * 102.74852 * 37.92148 * 22 21 19 24 24 C 1.52995 * 117.46290 * 248.92332 * 17 15 14 25 25 H 1.09003 * 119.30043 * 3.71520 * 24 17 15 26 26 H 1.09003 * 109.46892 * 60.00142 * 1 2 3 27 27 H 1.08997 * 109.47576 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.47051 * 300.00442 * 1 2 3 29 29 H 1.08998 * 109.47431 * 239.99591 * 2 1 3 30 30 H 1.09003 * 109.46892 * 119.99858 * 2 1 3 31 31 H 0.96996 * 120.00185 * 5.83674 * 7 6 4 32 32 H 1.08997 * 109.47342 * 29.99161 * 12 3 2 33 33 H 1.09003 * 109.47139 * 149.99818 * 12 3 2 34 34 H 1.08999 * 109.47207 * 300.00707 * 13 12 3 35 35 H 1.09003 * 109.46867 * 60.00215 * 13 12 3 36 36 H 0.97002 * 119.99748 * 0.02562 * 14 13 12 37 37 H 1.08996 * 110.48790 * 30.88605 * 21 19 17 38 38 H 1.09005 * 110.48543 * 153.53405 * 21 19 17 39 39 H 1.09003 * 110.73228 * 279.61646 * 22 21 19 40 40 H 1.08998 * 110.93644 * 156.32035 * 22 21 19 41 41 H 1.08994 * 110.48624 * 203.40826 * 23 22 21 42 42 H 1.08998 * 110.59728 * 80.81501 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1498 2.0611 1.1814 5 1 2.0323 3.1344 1.2028 6 6 2.4342 1.3705 2.3515 7 7 3.3025 0.3814 2.3374 8 14 1.5849 1.8452 3.9461 9 1 2.0591 0.9617 5.0415 10 1 0.1161 1.6942 3.7885 11 1 1.9048 3.2572 4.2760 12 6 2.3660 2.0352 -1.2640 13 6 3.8419 1.7839 -1.5792 14 7 4.1895 2.4372 -2.8435 15 6 5.4458 2.3508 -3.3237 16 8 6.2885 1.7317 -2.7094 17 6 5.8031 3.0225 -4.6246 18 1 5.2898 3.9632 -4.8240 19 6 7.2460 2.8876 -5.1152 20 1 7.9757 2.3717 -4.4910 21 6 7.7725 3.9273 -6.1260 22 6 7.3850 3.3447 -7.5071 23 6 5.9925 2.7226 -7.2371 24 6 6.1158 2.1218 -5.8211 25 1 6.0127 1.0417 -5.7171 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 3.8059 0.1894 1.5309 32 1 1.7490 1.6285 -2.0653 33 1 2.1902 3.1076 -1.1787 34 1 4.4590 2.1904 -0.7780 35 1 4.0177 0.7115 -1.6646 36 1 3.5155 2.9327 -3.3346 37 1 7.2883 4.8911 -5.9690 38 1 8.8550 4.0252 -6.0437 39 1 8.0967 2.5792 -7.8164 40 1 7.3172 4.1327 -8.2571 41 1 5.7759 1.9414 -7.9657 42 1 5.2186 3.4899 -7.2605 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691013852.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:46:08 Heat of formation + Delta-G solvation = -24.745442 kcal Electronic energy + Delta-G solvation = -20112.397410 eV Core-core repulsion = 17092.339350 eV Total energy + Delta-G solvation = -3020.058060 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.45899 -39.53820 -38.26141 -35.94258 -33.56311 -32.81483 -31.76794 -29.19030 -29.10832 -26.13326 -25.06147 -23.65634 -22.06593 -21.69978 -21.07588 -20.67035 -19.25688 -18.49523 -17.28076 -16.72303 -16.20476 -16.13737 -16.00761 -15.55305 -15.47148 -14.86766 -14.53675 -14.30192 -14.03669 -13.99011 -13.78833 -13.10341 -12.73046 -12.62569 -12.51888 -12.47177 -12.30035 -12.23946 -11.99659 -11.93047 -11.79975 -11.69976 -11.47871 -11.18249 -11.07752 -10.67971 -10.35010 -10.19347 -8.99284 -8.33654 -5.39519 1.35781 1.57515 1.62721 1.83316 2.02423 2.64539 2.67058 3.05373 3.41254 3.65824 3.67691 3.73199 4.02358 4.09790 4.17470 4.22822 4.23124 4.35142 4.47474 4.50429 4.53581 4.66418 4.74647 4.80846 4.81219 4.92349 4.97814 5.01893 5.06072 5.14751 5.21131 5.22062 5.25902 5.31659 5.38932 5.49680 5.53696 5.94011 6.30136 6.50535 7.03033 7.19365 7.76077 8.19030 8.83819 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.035543 B = 0.003477 C = 0.003320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.583034 B = 8050.628255 C = 8431.334207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.131 3.869 3 N -0.601 5.601 4 C -0.377 4.377 5 H 0.046 0.954 6 C -0.056 4.056 7 N -0.906 5.906 8 Si 1.095 2.905 9 H -0.294 1.294 10 H -0.277 1.277 11 H -0.277 1.277 12 C 0.145 3.855 13 C 0.118 3.882 14 N -0.705 5.705 15 C 0.529 3.471 16 O -0.598 6.598 17 C -0.161 4.161 18 H 0.151 0.849 19 C -0.145 4.145 20 H 0.091 0.909 21 C -0.091 4.091 22 C -0.118 4.118 23 C -0.089 4.089 24 C -0.131 4.131 25 H 0.097 0.903 26 H 0.056 0.944 27 H 0.061 0.939 28 H 0.035 0.965 29 H 0.043 0.957 30 H 0.035 0.965 31 H 0.252 0.748 32 H 0.074 0.926 33 H 0.057 0.943 34 H 0.022 0.978 35 H 0.031 0.969 36 H 0.418 0.582 37 H 0.081 0.919 38 H 0.077 0.923 39 H 0.069 0.931 40 H 0.092 0.908 41 H 0.084 0.916 42 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.464 7.002 -21.491 22.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.006 3.994 3 N -0.323 5.323 4 C -0.506 4.506 5 H 0.063 0.937 6 C -0.257 4.257 7 N -0.544 5.544 8 Si 0.919 3.081 9 H -0.221 1.221 10 H -0.203 1.203 11 H -0.202 1.202 12 C 0.018 3.982 13 C -0.009 4.009 14 N -0.357 5.357 15 C 0.317 3.683 16 O -0.479 6.479 17 C -0.182 4.182 18 H 0.168 0.832 19 C -0.164 4.164 20 H 0.109 0.891 21 C -0.129 4.129 22 C -0.156 4.156 23 C -0.126 4.126 24 C -0.150 4.150 25 H 0.115 0.885 26 H 0.075 0.925 27 H 0.080 0.920 28 H 0.054 0.946 29 H 0.061 0.939 30 H 0.053 0.947 31 H 0.061 0.939 32 H 0.092 0.908 33 H 0.075 0.925 34 H 0.040 0.960 35 H 0.050 0.950 36 H 0.255 0.745 37 H 0.099 0.901 38 H 0.095 0.905 39 H 0.088 0.912 40 H 0.110 0.890 41 H 0.102 0.898 42 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 1.845 6.158 -19.451 20.486 hybrid contribution 0.361 0.192 -0.988 1.069 sum 2.206 6.350 -20.439 21.516 Atomic orbital electron populations 1.22013 0.96813 1.00616 1.00977 1.20901 0.93972 0.85408 0.99154 1.44207 1.73411 1.12558 1.02149 1.19846 1.50060 0.93120 0.87551 0.93667 1.26951 0.96397 0.98263 1.04084 1.70932 1.18675 1.35733 1.29049 0.83163 0.76265 0.75854 0.72780 1.22056 1.20292 1.20243 1.21172 0.90351 0.97847 0.88829 1.21914 0.99631 0.95366 0.84026 1.45842 1.11472 1.54502 1.23852 1.20481 0.81793 0.79472 0.86580 1.90682 1.50256 1.45030 1.61911 1.22367 1.01740 1.02592 0.91459 0.83185 1.23309 0.89670 1.02364 1.01059 0.89102 1.22021 1.01339 0.96920 0.92586 1.22690 0.95965 1.00504 0.96394 1.22059 0.98390 1.00530 0.91658 1.23348 1.02446 0.97191 0.92024 0.88451 0.92501 0.91986 0.94614 0.93901 0.94714 0.93935 0.90801 0.92487 0.95964 0.95009 0.74522 0.90067 0.90467 0.91207 0.88965 0.89779 0.89550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.57 10.21 71.98 0.74 -4.83 16 2 C 0.13 6.02 5.90 86.38 0.51 6.53 16 3 N -0.60 -29.32 2.36 -701.99 -1.66 -30.98 16 4 C -0.38 -20.91 9.25 84.03 0.78 -20.13 16 5 H 0.05 2.56 8.06 -2.91 -0.02 2.54 16 6 C -0.06 -3.20 4.52 84.86 0.38 -2.82 16 7 N -0.91 -55.75 12.21 21.65 0.26 -55.48 16 8 Si 1.09 50.94 30.06 68.60 2.06 53.00 16 9 H -0.29 -13.99 7.11 99.48 0.71 -13.28 16 10 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 11 H -0.28 -12.10 7.11 99.48 0.71 -11.40 16 12 C 0.14 5.68 5.76 86.38 0.50 6.18 16 13 C 0.12 4.86 6.00 86.38 0.52 5.38 16 14 N -0.70 -22.13 5.56 -463.07 -2.57 -24.70 16 15 C 0.53 17.91 7.61 87.66 0.67 18.58 16 16 O -0.60 -26.92 16.32 -3.03 -0.05 -26.97 16 17 C -0.16 -3.69 5.74 -11.54 -0.07 -3.76 16 18 H 0.15 2.47 8.14 -2.39 -0.02 2.46 16 19 C -0.15 -3.25 6.39 -10.13 -0.06 -3.32 16 20 H 0.09 2.59 7.78 -2.39 -0.02 2.57 16 21 C -0.09 -1.33 6.62 31.65 0.21 -1.12 16 22 C -0.12 -1.30 6.90 31.86 0.22 -1.08 16 23 C -0.09 -1.09 6.63 31.68 0.21 -0.88 16 24 C -0.13 -2.61 6.63 -10.12 -0.07 -2.68 16 25 H 0.10 2.24 8.14 -2.39 -0.02 2.22 16 26 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 27 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 28 H 0.03 1.49 8.14 -2.38 -0.02 1.47 16 29 H 0.04 1.80 8.03 -2.39 -0.02 1.78 16 30 H 0.03 1.86 5.70 -2.39 -0.01 1.85 16 31 H 0.25 16.10 8.11 -92.71 -0.75 15.35 16 32 H 0.07 2.43 8.07 -2.39 -0.02 2.41 16 33 H 0.06 2.17 8.04 -2.39 -0.02 2.15 16 34 H 0.02 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.03 1.45 8.14 -2.39 -0.02 1.43 16 36 H 0.42 9.43 8.47 -92.71 -0.79 8.65 16 37 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 38 H 0.08 1.06 8.14 -2.38 -0.02 1.04 16 39 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 40 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 41 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 42 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 Total: -1.00 -72.91 344.12 2.79 -70.11 By element: Atomic # 1 Polarization: 18.75 SS G_CDS: 0.22 Total: 18.97 kcal Atomic # 6 Polarization: -8.47 SS G_CDS: 4.53 Total: -3.94 kcal Atomic # 7 Polarization: -107.20 SS G_CDS: -3.97 Total: -111.16 kcal Atomic # 8 Polarization: -26.92 SS G_CDS: -0.05 Total: -26.97 kcal Atomic # 14 Polarization: 50.94 SS G_CDS: 2.06 Total: 53.00 kcal Total: -72.91 2.79 -70.11 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691013852.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.369 kcal (2) G-P(sol) polarization free energy of solvation -72.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds