Wall clock time and date at job start Mon Mar 30 2020 01:33:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46499 * 120.00230 * 2 1 4 4 C 1.53000 * 109.47459 * 89.99207 * 3 2 1 5 5 N 1.46499 * 109.47089 * 180.02562 * 4 3 2 6 6 C 1.36938 * 120.00181 * 180.02562 * 5 4 3 7 7 H 1.08001 * 119.99255 * 0.02562 * 6 5 4 8 8 C 1.38813 * 120.00197 * 179.97438 * 6 5 4 9 9 N 1.31612 * 120.00036 * 359.97438 * 8 6 5 10 10 Si 1.86802 * 119.99725 * 180.02562 * 8 6 5 11 11 H 1.48494 * 109.47205 * 90.00183 * 10 8 6 12 12 H 1.48500 * 109.46834 * 210.00329 * 10 8 6 13 13 H 1.48500 * 109.47268 * 329.99431 * 10 8 6 14 14 C 1.34778 * 119.99958 * 180.26419 * 2 1 3 15 15 O 1.21275 * 120.00345 * 184.83039 * 14 2 1 16 16 C 1.50707 * 119.99890 * 4.83522 * 14 2 1 17 17 C 1.51848 * 108.64710 * 286.72480 * 16 14 2 18 18 C 1.53115 * 110.72087 * 172.26128 * 17 16 14 19 19 C 1.51371 * 108.47975 * 85.92162 * 18 17 16 20 20 C 1.29528 * 120.36219 * 288.06907 * 19 18 17 21 21 C 1.51379 * 120.35684 * 0.02562 * 20 19 18 22 22 C 1.51842 * 108.64869 * 162.75863 * 16 14 2 23 23 H 1.09004 * 109.46763 * 87.63485 * 1 2 3 24 24 H 1.08992 * 109.47200 * 207.63677 * 1 2 3 25 25 H 1.08994 * 109.47010 * 327.63927 * 1 2 3 26 26 H 1.08997 * 109.47014 * 210.00074 * 3 2 1 27 27 H 1.09001 * 109.46654 * 329.99021 * 3 2 1 28 28 H 1.08996 * 109.47246 * 300.00203 * 4 3 2 29 29 H 1.09000 * 109.46675 * 60.00586 * 4 3 2 30 30 H 0.97002 * 120.00229 * 359.97438 * 5 4 3 31 31 H 0.97002 * 120.00243 * 179.97438 * 9 8 6 32 32 H 1.09000 * 108.60118 * 44.74043 * 16 14 2 33 33 H 1.08995 * 109.22114 * 292.72626 * 17 16 14 34 34 H 1.09002 * 109.22134 * 52.07299 * 17 16 14 35 35 H 1.09001 * 109.69817 * 326.21770 * 18 17 16 36 36 H 1.09000 * 109.81691 * 205.69496 * 18 17 16 37 37 H 1.07997 * 119.82563 * 108.08388 * 19 18 17 38 38 H 1.07995 * 119.82341 * 180.02562 * 20 19 18 39 39 H 1.09003 * 109.61211 * 312.16764 * 21 20 19 40 40 H 1.08999 * 109.61298 * 191.64082 * 21 20 19 41 41 H 1.08998 * 109.22274 * 307.92647 * 22 16 14 42 42 H 1.08994 * 109.22289 * 67.27644 * 22 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4525 1.7105 1.4425 5 7 3.1845 2.9795 1.4424 6 6 3.5271 3.5724 2.6282 7 1 3.2580 3.1042 3.5635 8 6 4.2212 4.7746 2.6281 9 7 4.5504 5.3443 1.4883 10 14 4.6892 5.5829 4.2459 11 1 6.0256 5.0971 4.6736 12 1 4.7315 7.0567 4.0687 13 1 3.6822 5.2377 5.2813 14 6 2.1389 -1.1672 -0.0054 15 8 3.3484 -1.1696 0.0830 16 6 1.3894 -2.4695 -0.1214 17 6 0.6894 -2.7460 1.1975 18 6 -0.2401 -3.9565 1.0741 19 6 0.5693 -5.2105 1.3263 20 6 1.4255 -5.6250 0.4472 21 6 1.6280 -4.8602 -0.8434 22 6 2.3668 -3.5577 -0.5289 23 1 -0.3633 0.0424 -1.0268 24 1 -0.3633 -0.9103 0.4767 25 1 -0.3633 0.8680 0.5500 26 1 3.1500 1.1383 -0.5138 27 1 1.6085 2.0283 -0.5140 28 1 1.5001 1.8409 1.9562 29 1 3.0416 0.9509 1.9563 30 1 3.4271 3.3994 0.6023 31 1 5.0351 6.1845 1.4882 32 1 0.6352 -2.3683 -0.9018 33 1 1.4368 -2.9415 1.9663 34 1 0.1025 -1.8727 1.4822 35 1 -0.6664 -3.9917 0.0716 36 1 -1.0410 -3.8839 1.8099 37 1 0.4320 -5.7629 2.2441 38 1 1.9980 -6.5211 0.6359 39 1 0.6598 -4.6327 -1.2896 40 1 2.2206 -5.4593 -1.5347 41 1 2.9159 -3.2341 -1.4131 42 1 3.0700 -3.7318 0.2856 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691605778.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:01 Heat of formation + Delta-G solvation = -11.275378 kcal Electronic energy + Delta-G solvation = -20513.313099 eV Core-core repulsion = 17493.839144 eV Total energy + Delta-G solvation = -3019.473955 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.44402 -38.06076 -35.88357 -34.39198 -32.92451 -32.05070 -31.20435 -28.28777 -26.80219 -25.64916 -24.23311 -23.58087 -21.70128 -20.82237 -19.02256 -18.24234 -17.20047 -17.02151 -16.61197 -15.62919 -15.36923 -14.78866 -14.47227 -13.93480 -13.69802 -13.61072 -13.31469 -13.27258 -13.00114 -12.86841 -12.62667 -12.44652 -12.06162 -11.72253 -11.44502 -11.24107 -10.97237 -10.91997 -10.84436 -10.79502 -10.64124 -10.44090 -10.08230 -9.74537 -9.58209 -9.13949 -8.83834 -8.43947 -6.89620 -5.72998 -3.01995 2.08818 2.79125 3.14241 3.46863 3.51602 3.53258 4.34166 4.43967 4.59342 4.64678 4.80992 4.89342 4.92161 5.07980 5.16478 5.23664 5.33754 5.36921 5.41553 5.51651 5.54252 5.58526 5.61269 5.70946 5.81142 5.88122 5.90771 5.97323 6.07183 6.08682 6.16659 6.23815 6.45529 6.61558 6.69964 6.79015 6.97073 7.56905 7.73404 8.36331 8.45838 9.56433 10.13104 10.48283 11.50050 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.033913 B = 0.003542 C = 0.003496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.454323 B = 7902.642434 C = 8006.958388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.612 5.612 3 C 0.108 3.892 4 C 0.143 3.857 5 N -0.731 5.731 6 C -0.237 4.237 7 H 0.070 0.930 8 C -0.015 4.015 9 N -0.934 5.934 10 Si 0.909 3.091 11 H -0.289 1.289 12 H -0.291 1.291 13 H -0.282 1.282 14 C 0.509 3.491 15 O -0.531 6.531 16 C -0.099 4.099 17 C -0.115 4.115 18 C -0.089 4.089 19 C -0.161 4.161 20 C -0.156 4.156 21 C -0.091 4.091 22 C -0.096 4.096 23 H 0.054 0.946 24 H 0.081 0.919 25 H 0.075 0.925 26 H 0.082 0.918 27 H 0.076 0.924 28 H 0.017 0.983 29 H 0.023 0.977 30 H 0.384 0.616 31 H 0.255 0.745 32 H 0.088 0.912 33 H 0.073 0.927 34 H 0.080 0.920 35 H 0.073 0.927 36 H 0.070 0.930 37 H 0.106 0.894 38 H 0.106 0.894 39 H 0.071 0.929 40 H 0.069 0.931 41 H 0.070 0.930 42 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.123 -20.911 -5.487 25.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.346 5.346 3 C -0.015 4.015 4 C 0.015 3.985 5 N -0.376 5.376 6 C -0.368 4.368 7 H 0.088 0.912 8 C -0.210 4.210 9 N -0.583 5.583 10 Si 0.740 3.260 11 H -0.217 1.217 12 H -0.217 1.217 13 H -0.208 1.208 14 C 0.297 3.703 15 O -0.407 6.407 16 C -0.120 4.120 17 C -0.153 4.153 18 C -0.126 4.126 19 C -0.179 4.179 20 C -0.174 4.174 21 C -0.129 4.129 22 C -0.134 4.134 23 H 0.072 0.928 24 H 0.099 0.901 25 H 0.093 0.907 26 H 0.101 0.899 27 H 0.094 0.906 28 H 0.035 0.965 29 H 0.041 0.959 30 H 0.217 0.783 31 H 0.065 0.935 32 H 0.106 0.894 33 H 0.092 0.908 34 H 0.098 0.902 35 H 0.091 0.909 36 H 0.089 0.911 37 H 0.124 0.876 38 H 0.124 0.876 39 H 0.089 0.911 40 H 0.088 0.912 41 H 0.089 0.911 42 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -12.458 -20.849 -5.269 24.853 hybrid contribution 0.320 0.691 0.688 1.026 sum -12.138 -20.158 -4.581 23.972 Atomic orbital electron populations 1.22103 0.79983 1.03943 1.01818 1.47827 1.06806 1.06344 1.73606 1.21694 0.97319 0.83368 0.99108 1.20897 0.95020 0.89327 0.93268 1.42221 1.67127 1.21638 1.06567 1.19214 1.29360 1.02289 0.85984 0.91227 1.24746 1.01287 0.98069 0.96930 1.69660 1.45081 1.19593 1.23945 0.86160 0.78398 0.78532 0.82941 1.21668 1.21743 1.20764 1.20749 0.88057 0.85238 0.76275 1.90727 1.14262 1.87100 1.48601 1.20992 0.98522 0.93063 0.99469 1.21492 0.99075 0.98318 0.96368 1.20822 0.97095 0.92438 1.02231 1.22542 0.98456 0.97673 0.99203 1.22575 0.98752 0.99650 0.96387 1.20840 1.00784 0.95706 0.95523 1.21101 0.97170 0.92482 1.02656 0.92783 0.90072 0.90663 0.89916 0.90597 0.96541 0.95897 0.78293 0.93503 0.89396 0.90848 0.90217 0.90874 0.91085 0.87578 0.87596 0.91058 0.91244 0.91132 0.90738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.64 9.78 59.85 0.59 1.22 16 2 N -0.61 -8.86 2.87 -181.57 -0.52 -9.38 16 3 C 0.11 1.92 5.50 -4.04 -0.02 1.90 16 4 C 0.14 3.15 6.58 -4.04 -0.03 3.12 16 5 N -0.73 -19.62 5.60 -59.91 -0.34 -19.96 16 6 C -0.24 -6.96 9.99 -15.06 -0.15 -7.11 16 7 H 0.07 1.99 7.83 -52.49 -0.41 1.58 16 8 C -0.01 -0.43 5.50 -17.43 -0.10 -0.53 16 9 N -0.93 -29.04 13.06 55.49 0.72 -28.31 16 10 Si 0.91 23.05 29.55 -169.99 -5.02 18.03 16 11 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 12 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 13 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 14 C 0.51 7.77 6.80 -10.98 -0.07 7.70 16 15 O -0.53 -10.58 15.65 5.56 0.09 -10.49 16 16 C -0.10 -1.06 1.32 -92.94 -0.12 -1.18 16 17 C -0.12 -1.08 4.50 -27.26 -0.12 -1.21 16 18 C -0.09 -0.65 5.63 -27.49 -0.15 -0.81 16 19 C -0.16 -1.29 9.34 -35.29 -0.33 -1.62 16 20 C -0.16 -1.29 9.34 -35.28 -0.33 -1.62 16 21 C -0.09 -0.75 5.62 -27.54 -0.15 -0.90 16 22 C -0.10 -1.04 4.24 -27.31 -0.12 -1.15 16 23 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 24 H 0.08 0.64 4.09 -51.93 -0.21 0.42 16 25 H 0.07 0.76 8.09 -51.93 -0.42 0.34 16 26 H 0.08 1.64 7.49 -51.93 -0.39 1.25 16 27 H 0.08 1.24 8.07 -51.93 -0.42 0.82 16 28 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 29 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.38 10.65 7.67 -40.82 -0.31 10.34 16 31 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 32 H 0.09 0.76 7.35 -51.93 -0.38 0.37 16 33 H 0.07 0.83 7.85 -51.93 -0.41 0.42 16 34 H 0.08 0.70 5.29 -51.93 -0.27 0.43 16 35 H 0.07 0.48 6.68 -51.93 -0.35 0.13 16 36 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 37 H 0.11 0.77 8.06 -52.49 -0.42 0.34 16 38 H 0.11 0.79 8.06 -52.49 -0.42 0.37 16 39 H 0.07 0.52 6.68 -51.93 -0.35 0.17 16 40 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.07 0.81 8.05 -51.93 -0.42 0.40 16 42 H 0.07 0.94 7.80 -51.93 -0.41 0.54 16 LS Contribution 330.26 15.07 4.98 4.98 Total: -1.00 -34.27 330.26 -8.05 -42.32 By element: Atomic # 1 Polarization: 11.83 SS G_CDS: -6.84 Total: 4.99 kcal Atomic # 6 Polarization: -1.07 SS G_CDS: -1.11 Total: -2.18 kcal Atomic # 7 Polarization: -57.52 SS G_CDS: -0.13 Total: -57.65 kcal Atomic # 8 Polarization: -10.58 SS G_CDS: 0.09 Total: -10.49 kcal Atomic # 14 Polarization: 23.05 SS G_CDS: -5.02 Total: 18.03 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -34.27 -8.05 -42.32 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691605778.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.045 kcal (2) G-P(sol) polarization free energy of solvation -34.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds