Wall clock time and date at job start Mon Mar 30 2020 01:33:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46499 * 120.00230 * 2 1 4 4 C 1.53000 * 109.47459 * 89.99207 * 3 2 1 5 5 N 1.46499 * 109.47089 * 180.02562 * 4 3 2 6 6 C 1.36938 * 120.00181 * 180.02562 * 5 4 3 7 7 H 1.08001 * 119.99255 * 0.02562 * 6 5 4 8 8 C 1.38813 * 120.00197 * 179.97438 * 6 5 4 9 9 N 1.31612 * 120.00036 * 359.97438 * 8 6 5 10 10 Si 1.86802 * 119.99725 * 180.02562 * 8 6 5 11 11 H 1.48494 * 109.47205 * 90.00183 * 10 8 6 12 12 H 1.48500 * 109.46834 * 210.00329 * 10 8 6 13 13 H 1.48500 * 109.47268 * 329.99431 * 10 8 6 14 14 C 1.34778 * 119.99958 * 180.26419 * 2 1 3 15 15 O 1.21275 * 120.00345 * 184.83039 * 14 2 1 16 16 C 1.50707 * 119.99890 * 4.83522 * 14 2 1 17 17 C 1.51848 * 108.64710 * 286.72480 * 16 14 2 18 18 C 1.53115 * 110.72087 * 172.26128 * 17 16 14 19 19 C 1.51371 * 108.47975 * 85.92162 * 18 17 16 20 20 C 1.29528 * 120.36219 * 288.06907 * 19 18 17 21 21 C 1.51379 * 120.35684 * 0.02562 * 20 19 18 22 22 C 1.51842 * 108.64869 * 162.75863 * 16 14 2 23 23 H 1.09004 * 109.46763 * 87.63485 * 1 2 3 24 24 H 1.08992 * 109.47200 * 207.63677 * 1 2 3 25 25 H 1.08994 * 109.47010 * 327.63927 * 1 2 3 26 26 H 1.08997 * 109.47014 * 210.00074 * 3 2 1 27 27 H 1.09001 * 109.46654 * 329.99021 * 3 2 1 28 28 H 1.08996 * 109.47246 * 300.00203 * 4 3 2 29 29 H 1.09000 * 109.46675 * 60.00586 * 4 3 2 30 30 H 0.97002 * 120.00229 * 359.97438 * 5 4 3 31 31 H 0.97002 * 120.00243 * 179.97438 * 9 8 6 32 32 H 1.09000 * 108.60118 * 44.74043 * 16 14 2 33 33 H 1.08995 * 109.22114 * 292.72626 * 17 16 14 34 34 H 1.09002 * 109.22134 * 52.07299 * 17 16 14 35 35 H 1.09001 * 109.69817 * 326.21770 * 18 17 16 36 36 H 1.09000 * 109.81691 * 205.69496 * 18 17 16 37 37 H 1.07997 * 119.82563 * 108.08388 * 19 18 17 38 38 H 1.07995 * 119.82341 * 180.02562 * 20 19 18 39 39 H 1.09003 * 109.61211 * 312.16764 * 21 20 19 40 40 H 1.08999 * 109.61298 * 191.64082 * 21 20 19 41 41 H 1.08998 * 109.22274 * 307.92647 * 22 16 14 42 42 H 1.08994 * 109.22289 * 67.27644 * 22 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4525 1.7105 1.4425 5 7 3.1845 2.9795 1.4424 6 6 3.5271 3.5724 2.6282 7 1 3.2580 3.1042 3.5635 8 6 4.2212 4.7746 2.6281 9 7 4.5504 5.3443 1.4883 10 14 4.6892 5.5829 4.2459 11 1 6.0256 5.0971 4.6736 12 1 4.7315 7.0567 4.0687 13 1 3.6822 5.2377 5.2813 14 6 2.1389 -1.1672 -0.0054 15 8 3.3484 -1.1696 0.0830 16 6 1.3894 -2.4695 -0.1214 17 6 0.6894 -2.7460 1.1975 18 6 -0.2401 -3.9565 1.0741 19 6 0.5693 -5.2105 1.3263 20 6 1.4255 -5.6250 0.4472 21 6 1.6280 -4.8602 -0.8434 22 6 2.3668 -3.5577 -0.5289 23 1 -0.3633 0.0424 -1.0268 24 1 -0.3633 -0.9103 0.4767 25 1 -0.3633 0.8680 0.5500 26 1 3.1500 1.1383 -0.5138 27 1 1.6085 2.0283 -0.5140 28 1 1.5001 1.8409 1.9562 29 1 3.0416 0.9509 1.9563 30 1 3.4271 3.3994 0.6023 31 1 5.0351 6.1845 1.4882 32 1 0.6352 -2.3683 -0.9018 33 1 1.4368 -2.9415 1.9663 34 1 0.1025 -1.8727 1.4822 35 1 -0.6664 -3.9917 0.0716 36 1 -1.0410 -3.8839 1.8099 37 1 0.4320 -5.7629 2.2441 38 1 1.9980 -6.5211 0.6359 39 1 0.6598 -4.6327 -1.2896 40 1 2.2206 -5.4593 -1.5347 41 1 2.9159 -3.2341 -1.4131 42 1 3.0700 -3.7318 0.2856 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691605778.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:00 Heat of formation + Delta-G solvation = -33.499185 kcal Electronic energy + Delta-G solvation = -20514.276796 eV Core-core repulsion = 17493.839144 eV Total energy + Delta-G solvation = -3020.437651 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.52978 -38.94930 -37.39047 -36.14118 -34.00325 -33.10311 -32.71808 -29.91828 -27.75224 -26.80695 -25.40886 -24.89958 -23.36690 -21.85562 -20.17729 -19.22536 -18.86040 -18.18189 -17.51115 -16.94485 -16.65663 -16.23051 -15.67269 -15.30657 -15.26297 -15.07744 -14.48283 -14.37270 -14.18144 -13.91108 -13.64721 -13.27152 -13.09623 -13.01211 -12.87133 -12.71951 -12.52082 -12.34909 -12.14795 -12.05828 -11.89714 -11.72747 -11.48901 -11.15430 -11.01205 -10.75154 -9.84835 -9.68731 -9.09842 -8.00314 -5.31560 1.44256 1.45516 1.47706 1.55872 1.62430 1.98006 2.53962 3.32695 3.43389 3.64548 3.84734 4.03105 4.07144 4.12268 4.20079 4.22983 4.25684 4.34994 4.47461 4.51096 4.54363 4.63936 4.69911 4.72001 4.85202 4.90133 4.95239 4.98978 5.06992 5.13334 5.19729 5.25093 5.34533 5.40305 5.43913 5.54482 5.85204 6.09887 6.21132 6.42177 7.17715 7.27096 7.98344 8.24279 9.23114 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.033913 B = 0.003542 C = 0.003496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.454323 B = 7902.642434 C = 8006.958388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.056 3.944 2 N -0.610 5.610 3 C 0.121 3.879 4 C 0.150 3.850 5 N -0.743 5.743 6 C -0.254 4.254 7 H 0.072 0.928 8 C -0.073 4.073 9 N -0.968 5.968 10 Si 0.979 3.021 11 H -0.288 1.288 12 H -0.289 1.289 13 H -0.267 1.267 14 C 0.500 3.500 15 O -0.590 6.590 16 C -0.088 4.088 17 C -0.111 4.111 18 C -0.083 4.083 19 C -0.166 4.166 20 C -0.168 4.168 21 C -0.084 4.084 22 C -0.094 4.094 23 H 0.081 0.919 24 H 0.106 0.894 25 H 0.076 0.924 26 H 0.055 0.945 27 H 0.096 0.904 28 H 0.030 0.970 29 H -0.004 1.004 30 H 0.376 0.624 31 H 0.254 0.746 32 H 0.122 0.878 33 H 0.047 0.953 34 H 0.090 0.910 35 H 0.091 0.909 36 H 0.087 0.913 37 H 0.112 0.888 38 H 0.109 0.891 39 H 0.090 0.910 40 H 0.076 0.924 41 H 0.056 0.944 42 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.730 -21.827 -5.283 27.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 N -0.343 5.343 3 C -0.003 4.003 4 C 0.022 3.978 5 N -0.387 5.387 6 C -0.385 4.385 7 H 0.090 0.910 8 C -0.265 4.265 9 N -0.618 5.618 10 Si 0.807 3.193 11 H -0.215 1.215 12 H -0.215 1.215 13 H -0.192 1.192 14 C 0.290 3.710 15 O -0.470 6.470 16 C -0.109 4.109 17 C -0.149 4.149 18 C -0.120 4.120 19 C -0.184 4.184 20 C -0.186 4.186 21 C -0.121 4.121 22 C -0.133 4.133 23 H 0.099 0.901 24 H 0.124 0.876 25 H 0.095 0.905 26 H 0.074 0.926 27 H 0.114 0.886 28 H 0.048 0.952 29 H 0.014 0.986 30 H 0.207 0.793 31 H 0.063 0.937 32 H 0.140 0.860 33 H 0.066 0.934 34 H 0.108 0.892 35 H 0.109 0.891 36 H 0.106 0.894 37 H 0.130 0.870 38 H 0.127 0.873 39 H 0.109 0.891 40 H 0.095 0.905 41 H 0.075 0.925 42 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -15.131 -21.802 -5.059 27.016 hybrid contribution 1.133 0.936 0.628 1.598 sum -13.998 -20.866 -4.432 25.514 Atomic orbital electron populations 1.22450 0.76632 1.05356 1.03998 1.47945 1.08744 1.04777 1.72798 1.21328 0.97225 0.85637 0.96100 1.20933 0.94196 0.86663 0.95960 1.42407 1.67668 1.22996 1.05622 1.19595 1.29335 1.02669 0.86911 0.90982 1.25644 1.01496 0.98773 1.00596 1.69816 1.45889 1.19916 1.26163 0.85068 0.78104 0.77213 0.78923 1.21516 1.21488 1.19166 1.21715 0.87690 0.86778 0.74809 1.90700 1.17061 1.87977 1.51237 1.21050 0.98544 0.89926 1.01335 1.21480 0.98829 0.99945 0.94636 1.20831 0.96693 0.90568 1.03904 1.22753 0.98356 0.97992 0.99266 1.22694 0.99128 1.00106 0.96679 1.20793 1.01408 0.94052 0.95815 1.21063 0.97076 0.94140 1.00974 0.90064 0.87589 0.90526 0.92624 0.88587 0.95172 0.98625 0.79251 0.93708 0.86019 0.93415 0.89199 0.89060 0.89393 0.87015 0.87307 0.89142 0.90507 0.92487 0.93611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.93 9.78 127.77 1.25 2.18 16 2 N -0.61 -17.04 2.87 -846.76 -2.43 -19.47 16 3 C 0.12 4.35 5.50 86.38 0.48 4.83 16 4 C 0.15 6.70 6.58 86.38 0.57 7.27 16 5 N -0.74 -40.76 5.60 -343.46 -1.92 -42.68 16 6 C -0.25 -15.03 9.99 84.03 0.84 -14.19 16 7 H 0.07 4.14 7.83 -2.91 -0.02 4.11 16 8 C -0.07 -4.33 5.50 84.86 0.47 -3.86 16 9 N -0.97 -60.94 13.06 21.65 0.28 -60.66 16 10 Si 0.98 47.48 29.55 68.60 2.03 49.51 16 11 H -0.29 -13.84 7.11 99.48 0.71 -13.14 16 12 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 13 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 14 C 0.50 15.27 6.80 87.66 0.60 15.87 16 15 O -0.59 -24.74 15.65 -3.01 -0.05 -24.79 16 16 C -0.09 -1.72 1.32 -12.30 -0.02 -1.74 16 17 C -0.11 -1.86 4.50 30.25 0.14 -1.73 16 18 C -0.08 -0.93 5.63 30.10 0.17 -0.76 16 19 C -0.17 -2.30 9.34 27.37 0.26 -2.05 16 20 C -0.17 -2.50 9.34 27.37 0.26 -2.25 16 21 C -0.08 -1.20 5.62 30.07 0.17 -1.03 16 22 C -0.09 -2.01 4.24 30.22 0.13 -1.88 16 23 H 0.08 0.97 8.14 -2.38 -0.02 0.96 16 24 H 0.11 1.23 4.09 -2.39 -0.01 1.22 16 25 H 0.08 1.30 8.09 -2.39 -0.02 1.28 16 26 H 0.06 2.31 7.49 -2.39 -0.02 2.29 16 27 H 0.10 3.06 8.07 -2.39 -0.02 3.04 16 28 H 0.03 1.27 8.14 -2.39 -0.02 1.26 16 29 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16 30 H 0.38 21.45 7.67 -92.71 -0.71 20.74 16 31 H 0.25 15.35 8.31 -92.71 -0.77 14.58 16 32 H 0.12 1.61 7.35 -2.39 -0.02 1.60 16 33 H 0.05 1.06 7.85 -2.39 -0.02 1.04 16 34 H 0.09 1.31 5.29 -2.39 -0.01 1.30 16 35 H 0.09 0.75 6.68 -2.39 -0.02 0.73 16 36 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 37 H 0.11 1.40 8.06 -2.91 -0.02 1.38 16 38 H 0.11 1.51 8.06 -2.91 -0.02 1.49 16 39 H 0.09 0.97 6.68 -2.39 -0.02 0.95 16 40 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 41 H 0.06 1.34 8.05 -2.39 -0.02 1.32 16 42 H 0.04 1.22 7.80 -2.39 -0.02 1.20 16 Total: -1.00 -76.67 330.26 3.49 -73.19 By element: Atomic # 1 Polarization: 23.96 SS G_CDS: 0.29 Total: 24.25 kcal Atomic # 6 Polarization: -4.65 SS G_CDS: 5.29 Total: 0.65 kcal Atomic # 7 Polarization: -118.73 SS G_CDS: -4.07 Total: -122.81 kcal Atomic # 8 Polarization: -24.74 SS G_CDS: -0.05 Total: -24.79 kcal Atomic # 14 Polarization: 47.48 SS G_CDS: 2.03 Total: 49.51 kcal Total: -76.67 3.49 -73.19 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691605778.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.690 kcal (2) G-P(sol) polarization free energy of solvation -76.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds