Wall clock time and date at job start Mon Mar 30 2020 00:21:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.46863 * 2 1 4 4 C 1.50701 * 109.47604 * 120.00035 * 2 1 3 5 5 O 1.21278 * 119.99960 * 119.99954 * 4 2 1 6 6 N 1.34774 * 119.99548 * 300.00402 * 4 2 1 7 7 C 1.46508 * 119.99755 * 179.97438 * 6 4 2 8 8 C 1.52996 * 109.47049 * 179.97438 * 7 6 4 9 9 H 1.09003 * 112.85149 * 316.19536 * 8 7 6 10 10 C 1.53784 * 113.61316 * 87.50111 * 8 7 6 11 11 C 1.53789 * 87.08043 * 139.97802 * 10 8 7 12 12 H 1.09001 * 113.69128 * 220.00666 * 11 10 8 13 13 N 1.46500 * 113.60855 * 89.11724 * 11 10 8 14 14 C 1.36939 * 119.99689 * 107.50524 * 13 11 10 15 15 H 1.07993 * 120.00358 * 359.97438 * 14 13 11 16 16 C 1.38813 * 119.99692 * 179.97438 * 14 13 11 17 17 N 1.31626 * 120.00207 * 359.97438 * 16 14 13 18 18 Si 1.86796 * 119.99917 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47548 * 90.00172 * 18 16 14 20 20 H 1.48505 * 109.47100 * 209.99843 * 18 16 14 21 21 H 1.48499 * 109.47177 * 329.99825 * 18 16 14 22 22 C 1.53777 * 87.08106 * 334.57084 * 11 10 8 23 23 C 1.53006 * 109.47030 * 240.00309 * 2 1 3 24 24 C 1.53000 * 117.49988 * 128.74828 * 23 2 1 25 25 C 1.52993 * 117.50097 * 60.08275 * 23 2 1 26 26 H 1.08995 * 109.46978 * 60.00077 * 1 2 3 27 27 H 1.09006 * 109.46745 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47107 * 299.99797 * 1 2 3 29 29 H 0.96996 * 120.00444 * 359.97438 * 6 4 2 30 30 H 1.08998 * 109.47069 * 299.99850 * 7 6 4 31 31 H 1.09000 * 109.47080 * 59.99864 * 7 6 4 32 32 H 1.08997 * 113.61841 * 254.52825 * 10 8 7 33 33 H 1.09000 * 113.61404 * 25.43583 * 10 8 7 34 34 H 0.96998 * 120.00106 * 287.49719 * 13 11 10 35 35 H 0.96995 * 119.99919 * 180.02562 * 17 16 14 36 36 H 1.09002 * 113.61407 * 270.88439 * 22 11 10 37 37 H 1.08993 * 113.69500 * 139.99224 * 22 11 10 38 38 H 1.08998 * 115.54561 * 274.41168 * 23 2 1 39 39 H 1.09002 * 117.50034 * 359.97438 * 24 23 2 40 40 H 1.08994 * 117.49821 * 145.02184 * 24 23 2 41 41 H 1.08998 * 117.50372 * 214.98185 * 25 23 2 42 42 H 1.09006 * 117.50059 * 359.97438 * 25 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0325 -0.7104 1.2304 5 8 2.7297 -1.6964 1.1191 6 7 1.7068 -0.2499 2.4545 7 6 2.1948 -0.9409 3.6507 8 6 1.6854 -0.2192 4.8999 9 1 1.7710 0.8650 4.8269 10 6 0.3014 -0.6997 5.3675 11 6 0.8368 -0.5921 6.8052 12 1 0.5152 -1.4064 7.4544 13 7 0.6382 0.7284 7.4079 14 6 -0.3024 0.8989 8.3884 15 1 -0.8981 0.0602 8.7171 16 6 -0.4902 2.1499 8.9599 17 7 0.2362 3.1721 8.5597 18 14 -1.7727 2.3825 10.2979 19 1 -1.1520 2.1439 11.6257 20 1 -2.3018 3.7690 10.2409 21 1 -2.8842 1.4197 10.0909 22 6 2.2417 -0.7940 6.2133 23 6 2.0400 -0.7212 -1.2493 24 6 3.0763 0.0040 -2.1102 25 6 1.6374 -0.1483 -2.6096 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.1494 0.5389 2.5435 30 1 1.8311 -1.9684 3.6506 31 1 3.2848 -0.9412 3.6508 32 1 -0.5022 0.0029 5.1471 33 1 0.0679 -1.7202 5.0639 34 1 1.1731 1.4817 7.1126 35 1 0.1052 4.0461 8.9593 36 1 2.5387 -1.8403 6.1408 37 1 3.0055 -0.1683 6.6749 38 1 2.1254 -1.8046 -1.1648 39 1 3.3945 0.9951 -1.7867 40 1 3.8431 -0.6023 -2.5923 41 1 1.4581 -0.8547 -3.4202 42 1 1.0087 0.7422 -2.6146 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691775636.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:21:16 Heat of formation + Delta-G solvation = 3.464511 kcal Electronic energy + Delta-G solvation = -19861.110807 eV Core-core repulsion = 16842.276022 eV Total energy + Delta-G solvation = -3018.834785 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.11374 -38.66723 -37.35527 -34.64206 -33.29984 -32.28175 -30.11066 -27.33981 -25.19340 -25.04875 -23.71517 -22.50881 -21.93252 -21.21481 -19.76255 -18.40176 -17.57366 -17.11769 -16.17823 -15.43031 -15.33287 -14.85846 -14.56477 -14.22044 -14.04624 -13.56729 -13.42346 -13.00992 -12.89881 -12.46543 -12.30581 -12.12869 -11.92719 -11.68225 -11.38353 -11.17238 -11.04731 -10.86550 -10.59213 -10.48719 -10.24326 -10.19014 -10.06706 -9.71270 -9.69181 -9.43375 -8.97050 -8.89248 -7.02355 -5.83035 -3.12100 2.65881 3.16286 3.40236 3.45700 3.47124 3.62436 4.36038 4.52759 4.53854 4.66445 4.83387 5.01795 5.05151 5.05936 5.17079 5.20668 5.27240 5.38366 5.43438 5.49278 5.61564 5.62476 5.68241 5.72673 5.86305 5.87624 5.90681 5.97054 6.09427 6.11257 6.20465 6.36112 6.45190 6.58784 6.72993 6.89306 7.02821 7.54988 7.66919 8.25148 8.36240 9.46889 10.04419 10.38650 11.39432 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.033438 B = 0.003140 C = 0.003002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 837.166248 B = 8915.750609 C = 9325.373859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.082 4.082 3 H 0.096 0.904 4 C 0.517 3.483 5 O -0.545 6.545 6 N -0.724 5.724 7 C 0.131 3.869 8 C -0.119 4.119 9 H 0.092 0.908 10 C -0.168 4.168 11 C 0.167 3.833 12 H 0.062 0.938 13 N -0.706 5.706 14 C -0.242 4.242 15 H 0.072 0.928 16 C -0.013 4.013 17 N -0.933 5.933 18 Si 0.909 3.091 19 H -0.289 1.289 20 H -0.291 1.291 21 H -0.281 1.281 22 C -0.148 4.148 23 C -0.133 4.133 24 C -0.178 4.178 25 C -0.179 4.179 26 H 0.067 0.933 27 H 0.062 0.938 28 H 0.063 0.937 29 H 0.402 0.598 30 H 0.065 0.935 31 H 0.062 0.938 32 H 0.066 0.934 33 H 0.067 0.933 34 H 0.385 0.615 35 H 0.256 0.744 36 H 0.077 0.923 37 H 0.068 0.932 38 H 0.115 0.885 39 H 0.093 0.907 40 H 0.093 0.907 41 H 0.094 0.906 42 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.490 -5.795 -18.906 19.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.103 4.103 3 H 0.114 0.886 4 C 0.303 3.697 5 O -0.422 6.422 6 N -0.375 5.375 7 C 0.007 3.993 8 C -0.138 4.138 9 H 0.111 0.889 10 C -0.209 4.209 11 C 0.055 3.945 12 H 0.080 0.920 13 N -0.345 5.345 14 C -0.373 4.373 15 H 0.090 0.910 16 C -0.209 4.209 17 N -0.581 5.581 18 Si 0.740 3.260 19 H -0.217 1.217 20 H -0.218 1.218 21 H -0.207 1.207 22 C -0.188 4.188 23 C -0.151 4.151 24 C -0.215 4.215 25 C -0.216 4.216 26 H 0.086 0.914 27 H 0.081 0.919 28 H 0.082 0.918 29 H 0.236 0.764 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.085 0.915 33 H 0.086 0.914 34 H 0.219 0.781 35 H 0.066 0.934 36 H 0.095 0.905 37 H 0.087 0.913 38 H 0.133 0.867 39 H 0.111 0.889 40 H 0.112 0.888 41 H 0.112 0.888 42 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 2.851 -6.496 -18.801 20.095 hybrid contribution -0.718 0.918 0.624 1.321 sum 2.134 -5.579 -18.177 19.133 Atomic orbital electron populations 1.21757 0.92470 1.02995 1.02738 1.20872 0.97502 0.99966 0.91958 0.88619 1.20504 0.80042 0.84582 0.84614 1.90670 1.38101 1.26552 1.86867 1.46092 1.53529 1.32177 1.05712 1.21469 0.98715 0.96041 0.83027 1.22708 0.98469 1.00075 0.92568 0.88937 1.23884 0.95739 0.99857 1.01422 1.21058 0.92302 0.89796 0.91349 0.91976 1.42173 1.44098 1.04788 1.43393 1.19293 1.11899 0.94489 1.11623 0.90990 1.24766 0.99982 0.95814 1.00349 1.69662 1.42733 1.00273 1.45434 0.86168 0.81046 0.76996 0.81836 1.21654 1.21760 1.20705 1.23444 0.99598 1.00322 0.95426 1.22037 1.03316 1.00098 0.89689 1.23021 0.92513 1.01912 1.04099 1.22986 0.98198 1.03268 0.97191 0.91383 0.91901 0.91790 0.76384 0.91665 0.91945 0.91525 0.91421 0.78118 0.93434 0.90484 0.91346 0.86674 0.88877 0.88804 0.88766 0.88728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.15 8.93 37.16 0.33 -0.82 16 2 C -0.08 -0.79 2.88 -91.77 -0.26 -1.05 16 3 H 0.10 0.80 7.90 -51.93 -0.41 0.39 16 4 C 0.52 6.69 7.15 -10.99 -0.08 6.61 16 5 O -0.54 -9.06 15.65 5.56 0.09 -8.97 16 6 N -0.72 -8.79 5.45 -60.29 -0.33 -9.12 16 7 C 0.13 1.76 5.51 -4.04 -0.02 1.74 16 8 C -0.12 -1.77 3.63 -89.81 -0.33 -2.09 16 9 H 0.09 1.47 8.14 -51.93 -0.42 1.04 16 10 C -0.17 -2.76 7.43 -25.91 -0.19 -2.95 16 11 C 0.17 3.23 4.56 -67.12 -0.31 2.92 16 12 H 0.06 1.21 8.10 -51.93 -0.42 0.79 16 13 N -0.71 -17.23 5.31 -52.63 -0.28 -17.51 16 14 C -0.24 -6.59 9.97 -15.06 -0.15 -6.74 16 15 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 16 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 17 N -0.93 -27.62 13.06 55.49 0.72 -26.90 16 18 Si 0.91 22.03 29.55 -169.99 -5.02 17.00 16 19 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 20 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 21 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 22 C -0.15 -2.37 7.39 -25.92 -0.19 -2.56 16 23 C -0.13 -1.30 4.75 -90.62 -0.43 -1.73 16 24 C -0.18 -1.53 10.18 -26.69 -0.27 -1.80 16 25 C -0.18 -1.37 9.74 -26.69 -0.26 -1.63 16 26 H 0.07 0.46 7.29 -51.93 -0.38 0.08 16 27 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.06 0.49 7.56 -51.93 -0.39 0.10 16 29 H 0.40 4.21 7.89 -40.82 -0.32 3.88 16 30 H 0.07 0.92 7.84 -51.93 -0.41 0.51 16 31 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 32 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 33 H 0.07 1.00 7.90 -51.93 -0.41 0.59 16 34 H 0.38 9.92 7.90 -40.82 -0.32 9.60 16 35 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 36 H 0.08 1.07 8.10 -51.93 -0.42 0.65 16 37 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 38 H 0.12 1.33 7.47 -51.93 -0.39 0.94 16 39 H 0.09 0.75 8.05 -51.93 -0.42 0.33 16 40 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 42 H 0.09 0.63 7.61 -51.93 -0.40 0.23 16 LS Contribution 344.72 15.07 5.19 5.19 Total: -1.00 -31.04 344.72 -9.07 -40.11 By element: Atomic # 1 Polarization: 17.95 SS G_CDS: -7.19 Total: 10.76 kcal Atomic # 6 Polarization: -8.32 SS G_CDS: -2.26 Total: -10.57 kcal Atomic # 7 Polarization: -53.64 SS G_CDS: 0.12 Total: -53.53 kcal Atomic # 8 Polarization: -9.06 SS G_CDS: 0.09 Total: -8.97 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -31.04 -9.07 -40.11 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691775636.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.579 kcal (2) G-P(sol) polarization free energy of solvation -31.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.114 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds