Wall clock time and date at job start Mon Mar 30 2020 00:21:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.46863 * 2 1 4 4 C 1.50701 * 109.47604 * 120.00035 * 2 1 3 5 5 O 1.21278 * 119.99960 * 119.99954 * 4 2 1 6 6 N 1.34774 * 119.99548 * 300.00402 * 4 2 1 7 7 C 1.46508 * 119.99755 * 179.97438 * 6 4 2 8 8 C 1.52996 * 109.47049 * 179.97438 * 7 6 4 9 9 H 1.09003 * 112.85149 * 316.19536 * 8 7 6 10 10 C 1.53784 * 113.61316 * 87.50111 * 8 7 6 11 11 C 1.53789 * 87.08043 * 139.97802 * 10 8 7 12 12 H 1.09001 * 113.69128 * 220.00666 * 11 10 8 13 13 N 1.46500 * 113.60855 * 89.11724 * 11 10 8 14 14 C 1.36939 * 119.99689 * 107.50524 * 13 11 10 15 15 H 1.07993 * 120.00358 * 359.97438 * 14 13 11 16 16 C 1.38813 * 119.99692 * 179.97438 * 14 13 11 17 17 N 1.31626 * 120.00207 * 359.97438 * 16 14 13 18 18 Si 1.86796 * 119.99917 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47548 * 90.00172 * 18 16 14 20 20 H 1.48505 * 109.47100 * 209.99843 * 18 16 14 21 21 H 1.48499 * 109.47177 * 329.99825 * 18 16 14 22 22 C 1.53777 * 87.08106 * 334.57084 * 11 10 8 23 23 C 1.53006 * 109.47030 * 240.00309 * 2 1 3 24 24 C 1.53000 * 117.49988 * 128.74828 * 23 2 1 25 25 C 1.52993 * 117.50097 * 60.08275 * 23 2 1 26 26 H 1.08995 * 109.46978 * 60.00077 * 1 2 3 27 27 H 1.09006 * 109.46745 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47107 * 299.99797 * 1 2 3 29 29 H 0.96996 * 120.00444 * 359.97438 * 6 4 2 30 30 H 1.08998 * 109.47069 * 299.99850 * 7 6 4 31 31 H 1.09000 * 109.47080 * 59.99864 * 7 6 4 32 32 H 1.08997 * 113.61841 * 254.52825 * 10 8 7 33 33 H 1.09000 * 113.61404 * 25.43583 * 10 8 7 34 34 H 0.96998 * 120.00106 * 287.49719 * 13 11 10 35 35 H 0.96995 * 119.99919 * 180.02562 * 17 16 14 36 36 H 1.09002 * 113.61407 * 270.88439 * 22 11 10 37 37 H 1.08993 * 113.69500 * 139.99224 * 22 11 10 38 38 H 1.08998 * 115.54561 * 274.41168 * 23 2 1 39 39 H 1.09002 * 117.50034 * 359.97438 * 24 23 2 40 40 H 1.08994 * 117.49821 * 145.02184 * 24 23 2 41 41 H 1.08998 * 117.50372 * 214.98185 * 25 23 2 42 42 H 1.09006 * 117.50059 * 359.97438 * 25 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0325 -0.7104 1.2304 5 8 2.7297 -1.6964 1.1191 6 7 1.7068 -0.2499 2.4545 7 6 2.1948 -0.9409 3.6507 8 6 1.6854 -0.2192 4.8999 9 1 1.7710 0.8650 4.8269 10 6 0.3014 -0.6997 5.3675 11 6 0.8368 -0.5921 6.8052 12 1 0.5152 -1.4064 7.4544 13 7 0.6382 0.7284 7.4079 14 6 -0.3024 0.8989 8.3884 15 1 -0.8981 0.0602 8.7171 16 6 -0.4902 2.1499 8.9599 17 7 0.2362 3.1721 8.5597 18 14 -1.7727 2.3825 10.2979 19 1 -1.1520 2.1439 11.6257 20 1 -2.3018 3.7690 10.2409 21 1 -2.8842 1.4197 10.0909 22 6 2.2417 -0.7940 6.2133 23 6 2.0400 -0.7212 -1.2493 24 6 3.0763 0.0040 -2.1102 25 6 1.6374 -0.1483 -2.6096 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.1494 0.5389 2.5435 30 1 1.8311 -1.9684 3.6506 31 1 3.2848 -0.9412 3.6508 32 1 -0.5022 0.0029 5.1471 33 1 0.0679 -1.7202 5.0639 34 1 1.1731 1.4817 7.1126 35 1 0.1052 4.0461 8.9593 36 1 2.5387 -1.8403 6.1408 37 1 3.0055 -0.1683 6.6749 38 1 2.1254 -1.8046 -1.1648 39 1 3.3945 0.9951 -1.7867 40 1 3.8431 -0.6023 -2.5923 41 1 1.4581 -0.8547 -3.4202 42 1 1.0087 0.7422 -2.6146 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691775636.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:21:15 Heat of formation + Delta-G solvation = -15.795182 kcal Electronic energy + Delta-G solvation = -19861.945970 eV Core-core repulsion = 16842.276022 eV Total energy + Delta-G solvation = -3019.669948 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.13957 -39.99879 -38.16837 -35.99064 -34.99227 -33.15285 -31.93387 -28.63995 -26.43923 -26.06323 -25.51951 -23.28292 -23.10153 -22.18173 -20.68128 -19.77086 -19.33216 -18.31184 -17.22792 -16.71300 -16.44462 -16.21423 -15.76915 -15.46185 -15.34454 -14.82935 -14.63374 -14.45951 -13.97690 -13.63770 -13.29227 -13.16455 -12.99133 -12.90747 -12.85660 -12.62360 -12.28939 -12.15414 -12.06654 -11.87088 -11.53471 -11.47604 -11.26922 -11.01109 -10.91002 -10.85598 -10.60139 -10.04145 -8.99939 -7.95339 -5.23601 1.48478 1.49527 1.57966 1.65515 2.20728 2.55967 2.94291 3.37300 3.64957 3.66954 3.73356 3.79539 3.90758 4.01232 4.14632 4.15919 4.32255 4.34564 4.40623 4.48398 4.52423 4.72475 4.76657 4.80431 4.88496 4.92614 4.98209 4.99601 5.06112 5.11774 5.26640 5.28630 5.30163 5.34778 5.38371 5.50229 5.56517 5.66287 6.28482 6.57269 7.25694 7.33514 8.10445 8.32959 9.27955 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.033438 B = 0.003140 C = 0.003002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 837.166248 B = 8915.750609 C = 9325.373859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.074 4.074 3 H 0.113 0.887 4 C 0.513 3.487 5 O -0.585 6.585 6 N -0.718 5.718 7 C 0.140 3.860 8 C -0.101 4.101 9 H 0.082 0.918 10 C -0.152 4.152 11 C 0.144 3.856 12 H 0.059 0.941 13 N -0.720 5.720 14 C -0.242 4.242 15 H 0.076 0.924 16 C -0.075 4.075 17 N -0.969 5.969 18 Si 0.972 3.028 19 H -0.288 1.288 20 H -0.296 1.296 21 H -0.270 1.270 22 C -0.136 4.136 23 C -0.153 4.153 24 C -0.184 4.184 25 C -0.160 4.160 26 H 0.087 0.913 27 H 0.052 0.948 28 H 0.068 0.932 29 H 0.411 0.589 30 H 0.065 0.935 31 H 0.059 0.941 32 H 0.049 0.951 33 H 0.090 0.910 34 H 0.374 0.626 35 H 0.251 0.749 36 H 0.104 0.896 37 H 0.057 0.943 38 H 0.090 0.910 39 H 0.100 0.900 40 H 0.092 0.908 41 H 0.102 0.898 42 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.759 -6.079 -20.007 20.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.095 4.095 3 H 0.131 0.869 4 C 0.301 3.699 5 O -0.466 6.466 6 N -0.370 5.370 7 C 0.016 3.984 8 C -0.120 4.120 9 H 0.100 0.900 10 C -0.193 4.193 11 C 0.034 3.966 12 H 0.077 0.923 13 N -0.358 5.358 14 C -0.374 4.374 15 H 0.094 0.906 16 C -0.267 4.267 17 N -0.619 5.619 18 Si 0.801 3.199 19 H -0.215 1.215 20 H -0.222 1.222 21 H -0.194 1.194 22 C -0.175 4.175 23 C -0.172 4.172 24 C -0.221 4.221 25 C -0.196 4.196 26 H 0.106 0.894 27 H 0.071 0.929 28 H 0.087 0.913 29 H 0.247 0.753 30 H 0.083 0.917 31 H 0.078 0.922 32 H 0.068 0.932 33 H 0.108 0.892 34 H 0.207 0.793 35 H 0.060 0.940 36 H 0.122 0.878 37 H 0.076 0.924 38 H 0.109 0.891 39 H 0.118 0.882 40 H 0.110 0.890 41 H 0.120 0.880 42 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 2.103 -6.817 -19.919 21.158 hybrid contribution -0.454 0.909 0.936 1.382 sum 1.648 -5.909 -18.982 19.949 Atomic orbital electron populations 1.21766 0.91153 1.02729 1.03974 1.20883 0.98434 1.00165 0.90030 0.86882 1.21129 0.79182 0.84086 0.85493 1.90651 1.40012 1.28476 1.87442 1.46048 1.53334 1.32286 1.05298 1.21271 0.98476 0.95823 0.82834 1.22486 0.97152 0.99511 0.92865 0.89963 1.23702 0.95905 1.00812 0.98852 1.21381 0.95230 0.87471 0.92524 0.92267 1.42302 1.43654 1.06358 1.43491 1.19665 1.11735 0.94489 1.11504 0.90599 1.25544 1.02396 0.95788 1.02992 1.69808 1.44655 1.00452 1.47032 0.85158 0.78976 0.76657 0.79080 1.21545 1.22232 1.19439 1.23354 0.97201 1.01843 0.95126 1.21958 1.05295 0.98939 0.90960 1.23114 0.93107 1.02019 1.03881 1.23074 0.97423 1.03505 0.95638 0.89439 0.92904 0.91275 0.75262 0.91696 0.92224 0.93161 0.89159 0.79331 0.94003 0.87797 0.92409 0.89146 0.88154 0.88958 0.88007 0.87111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.95 8.93 71.98 0.64 -1.31 16 2 C -0.07 -1.30 2.88 -11.54 -0.03 -1.34 16 3 H 0.11 1.61 7.90 -2.39 -0.02 1.59 16 4 C 0.51 12.79 7.15 87.66 0.63 13.42 16 5 O -0.59 -19.40 15.65 -3.02 -0.05 -19.45 16 6 N -0.72 -16.42 5.45 -463.06 -2.52 -18.94 16 7 C 0.14 3.55 5.51 86.38 0.48 4.02 16 8 C -0.10 -2.86 3.63 -10.27 -0.04 -2.90 16 9 H 0.08 2.54 8.14 -2.39 -0.02 2.52 16 10 C -0.15 -4.77 7.43 31.12 0.23 -4.54 16 11 C 0.14 5.44 4.56 45.52 0.21 5.65 16 12 H 0.06 2.25 8.10 -2.39 -0.02 2.23 16 13 N -0.72 -35.29 5.31 -320.44 -1.70 -37.00 16 14 C -0.24 -13.20 9.97 84.03 0.84 -12.36 16 15 H 0.08 3.98 7.83 -2.91 -0.02 3.96 16 16 C -0.07 -4.23 5.50 84.86 0.47 -3.76 16 17 N -0.97 -58.23 13.06 21.65 0.28 -57.94 16 18 Si 0.97 45.42 29.55 68.60 2.03 47.45 16 19 H -0.29 -13.30 7.11 99.48 0.71 -12.60 16 20 H -0.30 -13.91 7.11 99.48 0.71 -13.20 16 21 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 22 C -0.14 -4.15 7.39 31.12 0.23 -3.92 16 23 C -0.15 -2.83 4.75 -10.79 -0.05 -2.88 16 24 C -0.18 -2.90 10.18 30.62 0.31 -2.59 16 25 C -0.16 -2.06 9.74 30.62 0.30 -1.77 16 26 H 0.09 0.91 7.29 -2.39 -0.02 0.89 16 27 H 0.05 0.85 8.14 -2.38 -0.02 0.83 16 28 H 0.07 0.90 7.56 -2.39 -0.02 0.88 16 29 H 0.41 7.90 7.89 -92.71 -0.73 7.17 16 30 H 0.06 1.69 7.84 -2.39 -0.02 1.68 16 31 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 32 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 33 H 0.09 2.45 7.90 -2.39 -0.02 2.43 16 34 H 0.37 19.63 7.90 -92.71 -0.73 18.90 16 35 H 0.25 14.66 8.31 -92.71 -0.77 13.89 16 36 H 0.10 2.63 8.10 -2.39 -0.02 2.61 16 37 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 38 H 0.09 2.13 7.47 -2.39 -0.02 2.11 16 39 H 0.10 1.42 8.05 -2.39 -0.02 1.40 16 40 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 41 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 42 H 0.11 1.09 7.61 -2.38 -0.02 1.07 16 Total: -1.00 -67.00 344.72 1.79 -65.21 By element: Atomic # 1 Polarization: 35.40 SS G_CDS: -0.46 Total: 34.94 kcal Atomic # 6 Polarization: -18.48 SS G_CDS: 4.21 Total: -14.27 kcal Atomic # 7 Polarization: -109.94 SS G_CDS: -3.94 Total: -113.88 kcal Atomic # 8 Polarization: -19.40 SS G_CDS: -0.05 Total: -19.45 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 2.03 Total: 47.45 kcal Total: -67.00 1.79 -65.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691775636.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.416 kcal (2) G-P(sol) polarization free energy of solvation -67.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds