Wall clock time and date at job start Mon Mar 30 2020 00:44:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46501 * 109.47206 * 2 1 4 4 C 1.46502 * 119.99607 * 89.99487 * 3 2 1 5 5 C 1.52996 * 109.47591 * 270.00141 * 4 3 2 6 6 N 1.46498 * 109.47059 * 179.97438 * 5 4 3 7 7 C 1.36943 * 119.99752 * 179.72430 * 6 5 4 8 8 H 1.08002 * 119.99793 * 0.27665 * 7 6 5 9 9 C 1.38811 * 120.00012 * 180.27737 * 7 6 5 10 10 N 1.31624 * 119.99698 * 0.02562 * 9 7 6 11 11 Si 1.86795 * 120.00072 * 180.02562 * 9 7 6 12 12 H 1.48503 * 109.47294 * 90.00155 * 11 9 7 13 13 H 1.48499 * 109.47218 * 210.00015 * 11 9 7 14 14 H 1.48496 * 109.47166 * 329.99846 * 11 9 7 15 15 C 1.34777 * 120.00211 * 270.00542 * 3 2 1 16 16 O 1.21280 * 119.99969 * 180.02562 * 15 3 2 17 17 C 1.50697 * 119.99739 * 359.97438 * 15 3 2 18 18 C 1.53001 * 109.46942 * 180.02562 * 17 15 3 19 19 H 1.09003 * 110.35133 * 305.70755 * 18 17 15 20 20 C 1.51109 * 110.38190 * 67.99253 * 18 17 15 21 21 C 1.30530 * 111.10156 * 135.24825 * 20 18 17 22 22 C 1.51096 * 111.10365 * 359.97438 * 21 20 18 23 23 C 1.54629 * 110.38878 * 183.41481 * 18 17 15 24 24 H 1.08994 * 109.47273 * 299.99856 * 1 2 3 25 25 H 1.09007 * 109.47152 * 60.00068 * 1 2 3 26 26 H 1.09000 * 109.47314 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.46759 * 240.00230 * 2 1 3 28 28 H 1.08998 * 109.46997 * 120.00506 * 2 1 3 29 29 H 1.09004 * 109.46697 * 150.00182 * 4 3 2 30 30 H 1.09000 * 109.46990 * 30.01013 * 4 3 2 31 31 H 1.09004 * 109.47066 * 60.00267 * 5 4 3 32 32 H 1.08994 * 109.46974 * 300.00415 * 5 4 3 33 33 H 0.97001 * 120.00384 * 0.02562 * 6 5 4 34 34 H 0.96999 * 119.99739 * 180.02562 * 10 9 7 35 35 H 1.08994 * 109.47502 * 300.00628 * 17 15 3 36 36 H 1.08998 * 109.47234 * 60.00958 * 17 15 3 37 37 H 1.07994 * 124.44818 * 315.22497 * 20 18 17 38 38 H 1.08003 * 124.44618 * 179.97438 * 21 20 18 39 39 H 1.09001 * 110.38746 * 102.38027 * 22 21 20 40 40 H 1.09000 * 110.38615 * 224.63327 * 22 21 20 41 41 H 1.08999 * 111.03852 * 334.59012 * 23 18 17 42 42 H 1.09001 * 111.03725 * 98.52544 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2624 2.0718 1.2688 5 6 0.9875 2.7930 1.7105 6 7 1.2314 3.4830 2.9795 7 6 0.2290 4.2057 3.5697 8 1 -0.7427 4.2632 3.1018 9 6 0.4619 4.8642 4.7693 10 7 1.6463 4.7945 5.3392 11 14 -0.9056 5.8494 5.5747 12 1 -1.6742 4.9707 6.4927 13 1 -0.3177 6.9753 6.3439 14 1 -1.8123 6.3853 4.5278 15 6 2.2429 2.0166 -1.1672 16 8 2.6476 3.1599 -1.1671 17 6 1.9922 1.3061 -2.4723 18 6 2.3240 2.2433 -3.6352 19 1 1.7748 3.1797 -3.5360 20 6 3.8107 2.5084 -3.6898 21 6 4.2587 2.4228 -4.9128 22 6 3.1457 2.0859 -5.8775 23 6 1.9932 1.5652 -4.9849 24 1 -0.3633 0.5138 0.8899 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8933 -0.5138 -0.8901 28 1 1.8933 -0.5139 0.8899 29 1 3.0644 2.7985 1.1385 30 1 2.5506 1.3451 2.0284 31 1 0.1855 2.0663 1.8408 32 1 0.6994 3.5197 0.9508 33 1 2.1043 3.4317 3.3996 34 1 1.8089 5.2544 6.1776 35 1 2.6226 0.4188 -2.5299 36 1 0.9443 1.0117 -2.5302 37 1 4.4221 2.7387 -2.8299 38 1 5.2895 2.5731 -5.1977 39 1 2.8301 2.9774 -6.4195 40 1 3.4687 1.3131 -6.5750 41 1 2.0280 0.4794 -4.8962 42 1 1.0246 1.8945 -5.3612 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699169155.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:44:53 Heat of formation + Delta-G solvation = -13.637688 kcal Electronic energy + Delta-G solvation = -20327.945676 eV Core-core repulsion = 17308.369283 eV Total energy + Delta-G solvation = -3019.576392 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.15674 -38.44307 -36.11319 -34.51695 -32.09898 -31.17841 -30.30510 -29.05200 -27.80236 -25.50571 -23.52653 -23.16538 -21.38534 -20.63036 -19.29842 -18.44674 -17.19365 -17.02202 -16.03910 -15.88341 -15.37992 -14.85864 -14.50217 -13.85055 -13.77210 -13.58094 -13.29151 -13.01478 -12.82711 -12.50022 -12.13305 -12.04034 -11.97459 -11.78058 -11.41539 -11.31108 -11.24480 -11.13560 -10.89828 -10.83937 -10.80151 -10.51113 -10.08358 -9.74002 -9.49128 -8.97018 -8.83121 -8.46254 -6.89131 -5.73125 -3.02024 2.23918 2.82981 3.14896 3.46175 3.51205 3.53485 4.37988 4.48113 4.63657 4.68752 4.77603 4.87928 5.06417 5.19332 5.24717 5.30010 5.34760 5.41380 5.51485 5.55883 5.63333 5.68309 5.70160 5.73737 5.77483 5.80727 5.89520 6.05168 6.10114 6.11243 6.15260 6.28076 6.51200 6.66317 6.83508 6.84899 6.97676 7.59804 7.73052 8.39731 8.45984 9.56339 10.13276 10.48237 11.49905 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.028079 B = 0.003671 C = 0.003492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.948400 B = 7625.655784 C = 8015.352397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.106 3.894 3 N -0.610 5.610 4 C 0.107 3.893 5 C 0.143 3.857 6 N -0.731 5.731 7 C -0.237 4.237 8 H 0.069 0.931 9 C -0.015 4.015 10 N -0.934 5.934 11 Si 0.908 3.092 12 H -0.290 1.290 13 H -0.291 1.291 14 H -0.282 1.282 15 C 0.510 3.490 16 O -0.531 6.531 17 C -0.130 4.130 18 C -0.056 4.056 19 H 0.091 0.909 20 C -0.136 4.136 21 C -0.187 4.187 22 C -0.098 4.098 23 C -0.122 4.122 24 H 0.070 0.930 25 H 0.055 0.945 26 H 0.063 0.937 27 H 0.075 0.925 28 H 0.079 0.921 29 H 0.083 0.917 30 H 0.075 0.925 31 H 0.020 0.980 32 H 0.021 0.979 33 H 0.383 0.617 34 H 0.255 0.745 35 H 0.091 0.909 36 H 0.093 0.907 37 H 0.126 0.874 38 H 0.120 0.880 39 H 0.071 0.929 40 H 0.066 0.934 41 H 0.071 0.929 42 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.834 -13.181 -20.297 24.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.017 4.017 3 N -0.344 5.344 4 C -0.015 4.015 5 C 0.014 3.986 6 N -0.376 5.376 7 C -0.368 4.368 8 H 0.087 0.913 9 C -0.210 4.210 10 N -0.583 5.583 11 Si 0.739 3.261 12 H -0.217 1.217 13 H -0.217 1.217 14 H -0.208 1.208 15 C 0.298 3.702 16 O -0.407 6.407 17 C -0.170 4.170 18 C -0.075 4.075 19 H 0.109 0.891 20 C -0.154 4.154 21 C -0.205 4.205 22 C -0.135 4.135 23 C -0.159 4.159 24 H 0.089 0.911 25 H 0.074 0.926 26 H 0.082 0.918 27 H 0.093 0.907 28 H 0.098 0.902 29 H 0.101 0.899 30 H 0.093 0.907 31 H 0.038 0.962 32 H 0.039 0.961 33 H 0.217 0.783 34 H 0.065 0.935 35 H 0.109 0.891 36 H 0.111 0.889 37 H 0.143 0.857 38 H 0.138 0.862 39 H 0.090 0.910 40 H 0.085 0.915 41 H 0.090 0.910 42 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 1.894 -12.489 -20.264 23.879 hybrid contribution -0.476 0.525 0.804 1.072 sum 1.418 -11.965 -19.460 22.888 Atomic orbital electron populations 1.22324 0.95810 1.02067 1.03314 1.21566 0.94744 0.82517 1.02910 1.48003 1.65961 1.14034 1.06366 1.21696 0.99643 0.96812 0.83350 1.20980 0.94147 0.94211 0.89232 1.42234 1.13792 1.59845 1.21686 1.19208 0.92325 1.22778 1.02498 0.91255 1.24745 0.96948 1.01223 0.98122 1.69665 1.20958 1.47971 1.19670 0.86165 0.81084 0.79590 0.79226 1.21726 1.21725 1.20756 1.20644 0.77488 0.86817 0.85294 1.90728 1.45099 1.17638 1.87234 1.21762 1.03435 0.99579 0.92242 1.20852 0.94944 0.98697 0.92963 0.89118 1.23342 0.95828 0.98492 0.97725 1.23219 0.98797 1.03268 0.95250 1.21343 0.93958 1.00636 0.97556 1.22580 0.98499 1.00284 0.94565 0.91135 0.92597 0.91756 0.90672 0.90213 0.89863 0.90710 0.96219 0.96101 0.78314 0.93511 0.89069 0.88876 0.85661 0.86172 0.91008 0.91509 0.90994 0.90860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.77 10.24 37.16 0.38 -1.39 16 2 C 0.11 1.07 5.98 -4.04 -0.02 1.05 16 3 N -0.61 -8.65 2.47 -173.69 -0.43 -9.08 16 4 C 0.11 1.90 5.56 -4.04 -0.02 1.87 16 5 C 0.14 3.08 6.58 -4.04 -0.03 3.06 16 6 N -0.73 -19.48 5.60 -59.91 -0.34 -19.81 16 7 C -0.24 -6.91 9.99 -15.06 -0.15 -7.07 16 8 H 0.07 1.97 7.83 -52.49 -0.41 1.56 16 9 C -0.01 -0.43 5.50 -17.43 -0.10 -0.53 16 10 N -0.93 -28.97 13.06 55.49 0.72 -28.25 16 11 Si 0.91 23.01 29.55 -169.99 -5.02 17.98 16 12 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 13 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 14 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 15 C 0.51 7.56 7.45 -10.99 -0.08 7.48 16 16 O -0.53 -10.17 14.37 5.56 0.08 -10.09 16 17 C -0.13 -1.35 3.66 -27.88 -0.10 -1.45 16 18 C -0.06 -0.61 2.53 -90.71 -0.23 -0.84 16 19 H 0.09 1.17 7.96 -51.93 -0.41 0.76 16 20 C -0.14 -1.61 9.23 -35.69 -0.33 -1.94 16 21 C -0.19 -1.88 10.78 -35.70 -0.38 -2.27 16 22 C -0.10 -0.82 6.81 -26.74 -0.18 -1.00 16 23 C -0.12 -1.00 6.72 -24.93 -0.17 -1.17 16 24 H 0.07 0.89 6.26 -51.93 -0.33 0.57 16 25 H 0.05 0.55 7.22 -51.93 -0.38 0.17 16 26 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.07 0.57 6.44 -51.93 -0.33 0.23 16 28 H 0.08 0.76 7.89 -51.93 -0.41 0.35 16 29 H 0.08 1.64 7.42 -51.93 -0.39 1.25 16 30 H 0.07 1.22 7.89 -51.93 -0.41 0.81 16 31 H 0.02 0.42 6.26 -51.93 -0.33 0.09 16 32 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.38 10.60 7.67 -40.82 -0.31 10.29 16 34 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 35 H 0.09 0.78 7.40 -51.93 -0.38 0.39 16 36 H 0.09 0.81 7.19 -51.93 -0.37 0.43 16 37 H 0.13 1.70 7.44 -52.49 -0.39 1.31 16 38 H 0.12 1.06 8.06 -52.48 -0.42 0.64 16 39 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.07 0.51 7.91 -51.93 -0.41 0.09 16 42 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 337.27 15.07 5.08 5.08 Total: -1.00 -33.81 337.27 -8.25 -42.06 By element: Atomic # 1 Polarization: 13.24 SS G_CDS: -6.93 Total: 6.30 kcal Atomic # 6 Polarization: -2.78 SS G_CDS: -1.42 Total: -4.20 kcal Atomic # 7 Polarization: -57.10 SS G_CDS: -0.04 Total: -57.14 kcal Atomic # 8 Polarization: -10.17 SS G_CDS: 0.08 Total: -10.09 kcal Atomic # 14 Polarization: 23.01 SS G_CDS: -5.02 Total: 17.98 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -33.81 -8.25 -42.06 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699169155.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.419 kcal (2) G-P(sol) polarization free energy of solvation -33.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds