Wall clock time and date at job start Mon Mar 30 2020 00:44:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46501 * 109.47206 * 2 1 4 4 C 1.46502 * 119.99607 * 89.99487 * 3 2 1 5 5 C 1.52996 * 109.47591 * 270.00141 * 4 3 2 6 6 N 1.46498 * 109.47059 * 179.97438 * 5 4 3 7 7 C 1.36943 * 119.99752 * 179.72430 * 6 5 4 8 8 H 1.08002 * 119.99793 * 0.27665 * 7 6 5 9 9 C 1.38811 * 120.00012 * 180.27737 * 7 6 5 10 10 N 1.31624 * 119.99698 * 0.02562 * 9 7 6 11 11 Si 1.86795 * 120.00072 * 180.02562 * 9 7 6 12 12 H 1.48503 * 109.47294 * 90.00155 * 11 9 7 13 13 H 1.48499 * 109.47218 * 210.00015 * 11 9 7 14 14 H 1.48496 * 109.47166 * 329.99846 * 11 9 7 15 15 C 1.34777 * 120.00211 * 270.00542 * 3 2 1 16 16 O 1.21280 * 119.99969 * 180.02562 * 15 3 2 17 17 C 1.50697 * 119.99739 * 359.97438 * 15 3 2 18 18 C 1.53001 * 109.46942 * 180.02562 * 17 15 3 19 19 H 1.09003 * 110.35133 * 305.70755 * 18 17 15 20 20 C 1.51109 * 110.38190 * 67.99253 * 18 17 15 21 21 C 1.30530 * 111.10156 * 135.24825 * 20 18 17 22 22 C 1.51096 * 111.10365 * 359.97438 * 21 20 18 23 23 C 1.54629 * 110.38878 * 183.41481 * 18 17 15 24 24 H 1.08994 * 109.47273 * 299.99856 * 1 2 3 25 25 H 1.09007 * 109.47152 * 60.00068 * 1 2 3 26 26 H 1.09000 * 109.47314 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.46759 * 240.00230 * 2 1 3 28 28 H 1.08998 * 109.46997 * 120.00506 * 2 1 3 29 29 H 1.09004 * 109.46697 * 150.00182 * 4 3 2 30 30 H 1.09000 * 109.46990 * 30.01013 * 4 3 2 31 31 H 1.09004 * 109.47066 * 60.00267 * 5 4 3 32 32 H 1.08994 * 109.46974 * 300.00415 * 5 4 3 33 33 H 0.97001 * 120.00384 * 0.02562 * 6 5 4 34 34 H 0.96999 * 119.99739 * 180.02562 * 10 9 7 35 35 H 1.08994 * 109.47502 * 300.00628 * 17 15 3 36 36 H 1.08998 * 109.47234 * 60.00958 * 17 15 3 37 37 H 1.07994 * 124.44818 * 315.22497 * 20 18 17 38 38 H 1.08003 * 124.44618 * 179.97438 * 21 20 18 39 39 H 1.09001 * 110.38746 * 102.38027 * 22 21 20 40 40 H 1.09000 * 110.38615 * 224.63327 * 22 21 20 41 41 H 1.08999 * 111.03852 * 334.59012 * 23 18 17 42 42 H 1.09001 * 111.03725 * 98.52544 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2624 2.0718 1.2688 5 6 0.9875 2.7930 1.7105 6 7 1.2314 3.4830 2.9795 7 6 0.2290 4.2057 3.5697 8 1 -0.7427 4.2632 3.1018 9 6 0.4619 4.8642 4.7693 10 7 1.6463 4.7945 5.3392 11 14 -0.9056 5.8494 5.5747 12 1 -1.6742 4.9707 6.4927 13 1 -0.3177 6.9753 6.3439 14 1 -1.8123 6.3853 4.5278 15 6 2.2429 2.0166 -1.1672 16 8 2.6476 3.1599 -1.1671 17 6 1.9922 1.3061 -2.4723 18 6 2.3240 2.2433 -3.6352 19 1 1.7748 3.1797 -3.5360 20 6 3.8107 2.5084 -3.6898 21 6 4.2587 2.4228 -4.9128 22 6 3.1457 2.0859 -5.8775 23 6 1.9932 1.5652 -4.9849 24 1 -0.3633 0.5138 0.8899 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8933 -0.5138 -0.8901 28 1 1.8933 -0.5139 0.8899 29 1 3.0644 2.7985 1.1385 30 1 2.5506 1.3451 2.0284 31 1 0.1855 2.0663 1.8408 32 1 0.6994 3.5197 0.9508 33 1 2.1043 3.4317 3.3996 34 1 1.8089 5.2544 6.1776 35 1 2.6226 0.4188 -2.5299 36 1 0.9443 1.0117 -2.5302 37 1 4.4221 2.7387 -2.8299 38 1 5.2895 2.5731 -5.1977 39 1 2.8301 2.9774 -6.4195 40 1 3.4687 1.3131 -6.5750 41 1 2.0280 0.4794 -4.8962 42 1 1.0246 1.8945 -5.3612 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699169155.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:44:52 Heat of formation + Delta-G solvation = -35.015109 kcal Electronic energy + Delta-G solvation = -20328.872670 eV Core-core repulsion = 17308.369283 eV Total energy + Delta-G solvation = -3020.503387 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.25433 -39.31937 -37.47998 -36.32835 -33.72456 -32.44146 -31.49847 -29.80601 -29.35495 -26.69127 -25.30265 -24.10556 -23.10770 -21.38022 -20.37228 -19.44795 -19.15024 -18.13550 -17.16737 -16.88245 -16.74387 -16.23923 -15.78987 -15.32297 -15.21547 -15.01245 -14.74677 -14.37991 -14.01232 -13.50783 -13.21494 -12.96136 -12.94118 -12.78664 -12.74265 -12.63305 -12.56712 -12.34325 -12.14602 -12.09587 -12.02345 -11.89328 -11.77379 -11.60360 -10.97752 -10.72059 -9.77809 -9.70674 -9.08708 -8.00295 -5.31330 1.39630 1.43905 1.47063 1.55567 1.68614 2.01722 2.53882 3.32696 3.50705 3.74524 3.86541 3.97964 4.01645 4.11941 4.19634 4.24345 4.33677 4.47135 4.51636 4.53163 4.57798 4.64160 4.68891 4.77564 4.85766 4.94587 4.99898 5.02280 5.05598 5.11995 5.15660 5.31844 5.40528 5.44549 5.47446 5.59513 5.71207 6.00272 6.21317 6.48687 7.25340 7.27188 7.98909 8.24493 9.23190 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.028079 B = 0.003671 C = 0.003492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.948400 B = 7625.655784 C = 8015.352397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.099 3.901 3 N -0.608 5.608 4 C 0.121 3.879 5 C 0.151 3.849 6 N -0.744 5.744 7 C -0.252 4.252 8 H 0.072 0.928 9 C -0.073 4.073 10 N -0.968 5.968 11 Si 0.979 3.021 12 H -0.280 1.280 13 H -0.292 1.292 14 H -0.272 1.272 15 C 0.501 3.499 16 O -0.586 6.586 17 C -0.118 4.118 18 C -0.058 4.058 19 H 0.060 0.940 20 C -0.170 4.170 21 C -0.172 4.172 22 C -0.099 4.099 23 C -0.112 4.112 24 H 0.037 0.963 25 H 0.057 0.943 26 H 0.093 0.907 27 H 0.113 0.887 28 H 0.089 0.911 29 H 0.055 0.945 30 H 0.092 0.908 31 H 0.034 0.966 32 H -0.006 1.006 33 H 0.375 0.625 34 H 0.254 0.746 35 H 0.120 0.880 36 H 0.119 0.881 37 H 0.096 0.904 38 H 0.129 0.871 39 H 0.075 0.925 40 H 0.088 0.912 41 H 0.093 0.907 42 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.612 -15.457 -22.104 26.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.022 4.022 3 N -0.341 5.341 4 C -0.003 4.003 5 C 0.023 3.977 6 N -0.387 5.387 7 C -0.384 4.384 8 H 0.090 0.910 9 C -0.266 4.266 10 N -0.618 5.618 11 Si 0.807 3.193 12 H -0.206 1.206 13 H -0.219 1.219 14 H -0.197 1.197 15 C 0.291 3.709 16 O -0.465 6.465 17 C -0.157 4.157 18 C -0.077 4.077 19 H 0.078 0.922 20 C -0.188 4.188 21 C -0.190 4.190 22 C -0.136 4.136 23 C -0.150 4.150 24 H 0.056 0.944 25 H 0.076 0.924 26 H 0.112 0.888 27 H 0.131 0.869 28 H 0.107 0.893 29 H 0.073 0.927 30 H 0.110 0.890 31 H 0.051 0.949 32 H 0.012 0.988 33 H 0.207 0.793 34 H 0.063 0.937 35 H 0.138 0.862 36 H 0.137 0.863 37 H 0.114 0.886 38 H 0.147 0.853 39 H 0.093 0.907 40 H 0.107 0.893 41 H 0.112 0.888 42 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 0.643 -14.823 -22.107 26.624 hybrid contribution -0.054 1.223 1.301 1.787 sum 0.589 -13.599 -20.806 24.863 Atomic orbital electron populations 1.22292 0.95564 1.03522 1.01783 1.21931 0.94874 0.80119 1.05285 1.48130 1.65691 1.15479 1.04798 1.21305 0.96581 0.96679 0.85697 1.21020 0.96572 0.93569 0.86524 1.42430 1.12986 1.60212 1.23095 1.19587 0.92946 1.22990 1.02862 0.91017 1.25644 0.99509 1.02583 0.98826 1.69824 1.22995 1.49009 1.20001 0.85067 0.78174 0.77847 0.78211 1.20643 1.21861 1.19707 1.21601 0.76132 0.86390 0.86785 1.90706 1.47476 1.20319 1.88043 1.21813 1.05445 0.99648 0.88840 1.20849 0.93809 0.97980 0.95039 0.92215 1.23252 0.96574 1.01302 0.97647 1.23525 0.99868 1.00632 0.94964 1.21423 0.93243 1.01513 0.97454 1.22588 0.98891 1.01269 0.92219 0.94369 0.92354 0.88780 0.86899 0.89294 0.92691 0.89020 0.94865 0.98774 0.79339 0.93739 0.86187 0.86339 0.88628 0.85288 0.90692 0.89318 0.88806 0.89727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.03 10.24 71.98 0.74 -2.29 16 2 C 0.10 1.73 5.98 86.38 0.52 2.25 16 3 N -0.61 -16.94 2.47 -821.81 -2.03 -18.97 16 4 C 0.12 4.41 5.56 86.38 0.48 4.89 16 5 C 0.15 6.72 6.58 86.38 0.57 7.29 16 6 N -0.74 -40.91 5.60 -343.46 -1.92 -42.83 16 7 C -0.25 -14.99 9.99 84.03 0.84 -14.15 16 8 H 0.07 4.13 7.83 -2.91 -0.02 4.10 16 9 C -0.07 -4.38 5.50 84.86 0.47 -3.91 16 10 N -0.97 -61.19 13.06 21.65 0.28 -60.90 16 11 Si 0.98 47.63 29.55 68.60 2.03 49.65 16 12 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 13 H -0.29 -14.19 7.11 99.48 0.71 -13.48 16 14 H -0.27 -12.67 7.11 99.48 0.71 -11.96 16 15 C 0.50 14.93 7.45 87.66 0.65 15.59 16 16 O -0.59 -23.85 14.37 -3.03 -0.04 -23.90 16 17 C -0.12 -2.20 3.66 29.85 0.11 -2.09 16 18 C -0.06 -1.22 2.53 -10.86 -0.03 -1.25 16 19 H 0.06 1.60 7.96 -2.39 -0.02 1.58 16 20 C -0.17 -4.08 9.23 26.26 0.24 -3.83 16 21 C -0.17 -3.25 10.78 26.26 0.28 -2.97 16 22 C -0.10 -1.39 6.81 30.59 0.21 -1.18 16 23 C -0.11 -1.49 6.72 31.76 0.21 -1.28 16 24 H 0.04 0.91 6.26 -2.39 -0.01 0.90 16 25 H 0.06 0.98 7.22 -2.38 -0.02 0.97 16 26 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 27 H 0.11 1.17 6.44 -2.38 -0.02 1.16 16 28 H 0.09 1.43 7.89 -2.39 -0.02 1.41 16 29 H 0.05 2.30 7.42 -2.38 -0.02 2.29 16 30 H 0.09 2.99 7.89 -2.39 -0.02 2.97 16 31 H 0.03 1.41 6.26 -2.38 -0.01 1.40 16 32 H -0.01 -0.29 8.14 -2.39 -0.02 -0.31 16 33 H 0.37 21.55 7.67 -92.71 -0.71 20.83 16 34 H 0.25 15.40 8.31 -92.71 -0.77 14.63 16 35 H 0.12 1.58 7.40 -2.39 -0.02 1.56 16 36 H 0.12 1.63 7.19 -2.39 -0.02 1.61 16 37 H 0.10 2.82 7.44 -2.91 -0.02 2.80 16 38 H 0.13 2.12 8.06 -2.91 -0.02 2.10 16 39 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 40 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 41 H 0.09 0.87 7.91 -2.39 -0.02 0.85 16 42 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 Total: -1.00 -76.82 337.27 3.88 -72.93 By element: Atomic # 1 Polarization: 26.66 SS G_CDS: 0.28 Total: 26.94 kcal Atomic # 6 Polarization: -8.23 SS G_CDS: 5.29 Total: -2.93 kcal Atomic # 7 Polarization: -119.03 SS G_CDS: -3.67 Total: -122.70 kcal Atomic # 8 Polarization: -23.85 SS G_CDS: -0.04 Total: -23.90 kcal Atomic # 14 Polarization: 47.63 SS G_CDS: 2.03 Total: 49.65 kcal Total: -76.82 3.88 -72.93 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699169155.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.919 kcal (2) G-P(sol) polarization free energy of solvation -76.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds