Wall clock time and date at job start Mon Mar 30 2020 00:45:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46502 * 109.46804 * 2 1 4 4 C 1.46496 * 119.99858 * 90.00221 * 3 2 1 5 5 C 1.52997 * 109.46953 * 269.99454 * 4 3 2 6 6 N 1.46506 * 109.47289 * 180.02562 * 5 4 3 7 7 C 1.36930 * 120.00258 * 180.02562 * 6 5 4 8 8 H 1.08004 * 119.99823 * 0.02562 * 7 6 5 9 9 C 1.38815 * 120.00439 * 179.97438 * 7 6 5 10 10 N 1.31618 * 119.99225 * 0.02562 * 9 7 6 11 11 Si 1.86794 * 120.00268 * 179.97438 * 9 7 6 12 12 H 1.48499 * 109.47312 * 60.00457 * 11 9 7 13 13 H 1.48506 * 109.46866 * 180.02562 * 11 9 7 14 14 H 1.48499 * 109.47236 * 300.00219 * 11 9 7 15 15 C 1.34774 * 119.99782 * 269.99447 * 3 2 1 16 16 O 1.21285 * 119.99988 * 180.02562 * 15 3 2 17 17 C 1.50706 * 120.00178 * 0.02562 * 15 3 2 18 18 H 1.08994 * 115.55215 * 34.40794 * 17 15 3 19 19 C 1.53003 * 117.49502 * 248.74260 * 17 15 3 20 20 C 1.53005 * 117.49853 * 180.08523 * 17 15 3 21 21 H 1.08999 * 117.49333 * 359.97438 * 20 17 15 22 22 C 1.52994 * 117.49531 * 214.97637 * 20 17 15 23 23 C 1.53001 * 117.50137 * 128.62032 * 22 20 17 24 24 C 1.52997 * 60.00165 * 252.50957 * 23 22 20 25 25 H 1.09001 * 109.47714 * 300.00032 * 1 2 3 26 26 H 1.08996 * 109.47389 * 60.00345 * 1 2 3 27 27 H 1.09003 * 109.47066 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47069 * 239.99984 * 2 1 3 29 29 H 1.09000 * 109.46920 * 119.99791 * 2 1 3 30 30 H 1.09001 * 109.47062 * 149.99949 * 4 3 2 31 31 H 1.08996 * 109.47565 * 29.99414 * 4 3 2 32 32 H 1.09001 * 109.47289 * 60.00079 * 5 4 3 33 33 H 1.09004 * 109.47261 * 300.00335 * 5 4 3 34 34 H 0.97001 * 119.99251 * 0.02562 * 6 5 4 35 35 H 0.97000 * 119.99950 * 179.97438 * 10 9 7 36 36 H 1.09003 * 117.49734 * 0.02562 * 19 17 15 37 37 H 1.08996 * 117.49906 * 145.01682 * 19 17 15 38 38 H 1.08997 * 115.54843 * 274.32581 * 22 20 17 39 39 H 1.09000 * 117.49612 * 359.97438 * 23 22 20 40 40 H 1.08996 * 117.49981 * 145.01034 * 23 22 20 41 41 H 1.08997 * 117.49632 * 252.51256 * 24 23 22 42 42 H 1.08999 * 117.51874 * 107.47670 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.2624 2.0718 1.2687 5 6 0.9874 2.7931 1.7103 6 7 1.2317 3.4842 2.9788 7 6 0.2276 4.2019 3.5719 8 1 -0.7445 4.2581 3.1048 9 6 0.4589 4.8563 4.7741 10 7 1.6435 4.7873 5.3435 11 14 -0.9106 5.8360 5.5828 12 1 -2.0546 4.9365 5.8784 13 1 -0.4112 6.4343 6.8469 14 1 -1.3544 6.9164 4.6658 15 6 2.2429 2.0165 -1.1672 16 8 2.6476 3.1599 -1.1672 17 6 1.9914 1.3062 -2.4724 18 1 1.1547 0.6077 -2.4738 19 6 3.2080 0.9530 -3.3303 20 6 2.2674 2.0806 -3.7628 21 1 2.6305 3.1039 -3.6676 22 6 1.3481 1.8148 -4.9565 23 6 0.7136 3.0259 -5.6430 24 6 -0.1441 2.1014 -4.7767 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 3.0643 2.7985 1.1384 31 1 2.5504 1.3452 2.0284 32 1 0.1855 2.0664 1.8406 33 1 0.6993 3.5197 0.9506 34 1 2.1048 3.4333 3.3985 35 1 1.8053 5.2449 6.1834 36 1 4.1903 1.2340 -2.9505 37 1 3.1715 0.0223 -3.8964 38 1 1.6259 0.9682 -5.5844 39 1 0.9508 4.0121 -5.2440 40 1 0.5740 2.9765 -6.7229 41 1 -0.8479 1.4437 -5.2866 42 1 -0.4708 2.4790 -3.8078 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699208413.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:07 Heat of formation + Delta-G solvation = 23.448684 kcal Electronic energy + Delta-G solvation = -20311.271618 eV Core-core repulsion = 17293.303411 eV Total energy + Delta-G solvation = -3017.968206 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.23196 -38.17273 -36.21374 -35.05101 -34.42051 -31.62347 -30.30434 -27.97365 -25.19158 -23.75745 -23.47961 -22.72070 -22.43612 -21.27851 -20.14975 -18.81856 -17.34821 -17.06385 -16.08451 -15.71810 -15.21023 -14.87137 -14.40188 -14.10816 -13.83922 -13.51729 -13.25347 -13.01203 -12.97707 -12.73134 -12.44851 -11.86736 -11.77644 -11.55831 -11.29591 -11.15449 -11.12823 -11.03953 -10.87869 -10.83562 -10.53638 -10.22685 -10.11363 -9.84300 -9.73415 -9.52609 -8.82520 -8.47727 -6.89141 -5.72716 -3.01669 2.58190 3.06324 3.47150 3.47707 3.51274 3.52892 3.81757 4.30232 4.54004 4.59863 4.64647 4.76874 4.87889 4.90234 5.03812 5.09523 5.21790 5.25193 5.36749 5.46026 5.46805 5.55731 5.65674 5.70920 5.71377 5.78165 5.80407 5.88410 5.94097 5.95866 6.09987 6.11185 6.13160 6.28327 6.65839 6.83705 6.97241 7.58047 7.72881 8.37175 8.46194 9.56639 10.13378 10.48592 11.50284 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.023705 B = 0.003873 C = 0.003692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.919318 B = 7227.104162 C = 7582.730622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.107 3.893 3 N -0.604 5.604 4 C 0.108 3.892 5 C 0.142 3.858 6 N -0.731 5.731 7 C -0.238 4.238 8 H 0.069 0.931 9 C -0.014 4.014 10 N -0.934 5.934 11 Si 0.909 3.091 12 H -0.286 1.286 13 H -0.290 1.290 14 H -0.286 1.286 15 C 0.540 3.460 16 O -0.535 6.535 17 C -0.182 4.182 18 H 0.124 0.876 19 C -0.146 4.146 20 C -0.092 4.092 21 H 0.119 0.881 22 C -0.127 4.127 23 C -0.175 4.175 24 C -0.177 4.177 25 H 0.070 0.930 26 H 0.055 0.945 27 H 0.064 0.936 28 H 0.077 0.923 29 H 0.080 0.920 30 H 0.083 0.917 31 H 0.076 0.924 32 H 0.021 0.979 33 H 0.021 0.979 34 H 0.384 0.616 35 H 0.256 0.744 36 H 0.100 0.900 37 H 0.103 0.897 38 H 0.107 0.893 39 H 0.097 0.903 40 H 0.093 0.907 41 H 0.093 0.907 42 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.328 -13.261 -20.340 24.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.016 4.016 3 N -0.337 5.337 4 C -0.015 4.015 5 C 0.014 3.986 6 N -0.375 5.375 7 C -0.369 4.369 8 H 0.087 0.913 9 C -0.210 4.210 10 N -0.583 5.583 11 Si 0.740 3.260 12 H -0.213 1.213 13 H -0.216 1.216 14 H -0.212 1.212 15 C 0.328 3.672 16 O -0.411 6.411 17 C -0.203 4.203 18 H 0.142 0.858 19 C -0.183 4.183 20 C -0.110 4.110 21 H 0.137 0.863 22 C -0.145 4.145 23 C -0.212 4.212 24 C -0.214 4.214 25 H 0.089 0.911 26 H 0.074 0.926 27 H 0.082 0.918 28 H 0.095 0.905 29 H 0.098 0.902 30 H 0.102 0.898 31 H 0.095 0.905 32 H 0.038 0.962 33 H 0.039 0.961 34 H 0.217 0.783 35 H 0.065 0.935 36 H 0.118 0.882 37 H 0.121 0.879 38 H 0.125 0.875 39 H 0.115 0.885 40 H 0.112 0.888 41 H 0.112 0.888 42 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 0.397 -12.572 -20.275 23.860 hybrid contribution -0.636 0.429 0.763 1.082 sum -0.239 -12.143 -19.512 22.983 Atomic orbital electron populations 1.22335 0.95836 1.02063 1.03330 1.21565 0.94686 0.82392 1.02964 1.47856 1.65699 1.14057 1.06052 1.21719 0.99701 0.96848 0.83207 1.20987 0.94113 0.94217 0.89279 1.42218 1.13663 1.59972 1.21682 1.19163 0.92254 1.23156 1.02337 0.91304 1.24740 0.96954 1.01227 0.98047 1.69652 1.21005 1.48001 1.19635 0.86242 0.81160 0.79991 0.78652 1.21268 1.21633 1.21244 1.19649 0.77212 0.86033 0.84345 1.90722 1.45685 1.17565 1.87143 1.22370 1.02564 1.04914 0.90482 0.85795 1.23040 0.94178 0.99776 1.01318 1.21834 0.99646 0.98044 0.91511 0.86293 1.21754 0.93878 1.00254 0.98609 1.22989 1.04162 0.95386 0.98615 1.22986 0.92921 1.03416 1.02071 0.91136 0.92568 0.91751 0.90485 0.90191 0.89841 0.90541 0.96154 0.96106 0.78301 0.93452 0.88193 0.87884 0.87503 0.88492 0.88806 0.88840 0.88486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.86 10.12 37.16 0.38 -1.49 16 2 C 0.11 1.14 5.80 -4.04 -0.02 1.12 16 3 N -0.60 -8.88 2.47 -173.69 -0.43 -9.31 16 4 C 0.11 1.93 5.56 -4.05 -0.02 1.91 16 5 C 0.14 3.11 6.58 -4.04 -0.03 3.09 16 6 N -0.73 -19.57 5.60 -59.90 -0.34 -19.91 16 7 C -0.24 -6.97 9.99 -15.06 -0.15 -7.12 16 8 H 0.07 1.96 7.83 -52.48 -0.41 1.55 16 9 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 10 N -0.93 -29.02 13.06 55.49 0.72 -28.29 16 11 Si 0.91 23.03 29.55 -169.99 -5.02 18.01 16 12 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 13 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 14 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 15 C 0.54 8.45 7.46 -10.98 -0.08 8.37 16 16 O -0.53 -10.75 15.84 5.55 0.09 -10.66 16 17 C -0.18 -2.04 4.44 -91.76 -0.41 -2.45 16 18 H 0.12 1.18 6.48 -51.93 -0.34 0.84 16 19 C -0.15 -1.34 9.96 -26.69 -0.27 -1.61 16 20 C -0.09 -0.98 5.38 -90.58 -0.49 -1.47 16 21 H 0.12 1.54 7.67 -51.93 -0.40 1.14 16 22 C -0.13 -1.10 5.87 -90.62 -0.53 -1.64 16 23 C -0.17 -1.50 10.25 -26.73 -0.27 -1.78 16 24 C -0.18 -1.56 10.18 -26.73 -0.27 -1.83 16 25 H 0.07 0.92 6.26 -51.93 -0.33 0.59 16 26 H 0.06 0.59 7.45 -51.93 -0.39 0.20 16 27 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 28 H 0.08 0.64 6.64 -51.93 -0.34 0.30 16 29 H 0.08 0.79 7.89 -51.93 -0.41 0.38 16 30 H 0.08 1.67 7.42 -51.93 -0.39 1.28 16 31 H 0.08 1.25 7.89 -51.93 -0.41 0.84 16 32 H 0.02 0.44 6.26 -51.93 -0.33 0.11 16 33 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.38 10.64 7.67 -40.82 -0.31 10.33 16 35 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 36 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.11 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 346.01 15.07 5.21 5.21 Total: -1.00 -33.90 346.01 -9.01 -42.91 By element: Atomic # 1 Polarization: 14.43 SS G_CDS: -6.99 Total: 7.44 kcal Atomic # 6 Polarization: -3.14 SS G_CDS: -2.26 Total: -5.41 kcal Atomic # 7 Polarization: -57.47 SS G_CDS: -0.04 Total: -57.51 kcal Atomic # 8 Polarization: -10.75 SS G_CDS: 0.09 Total: -10.66 kcal Atomic # 14 Polarization: 23.03 SS G_CDS: -5.02 Total: 18.01 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -33.90 -9.01 -42.91 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699208413.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.360 kcal (2) G-P(sol) polarization free energy of solvation -33.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.911 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds