Wall clock time and date at job start Mon Mar 30 2020 00:45:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46502 * 109.46804 * 2 1 4 4 C 1.46496 * 119.99858 * 90.00221 * 3 2 1 5 5 C 1.52997 * 109.46953 * 269.99454 * 4 3 2 6 6 N 1.46506 * 109.47289 * 180.02562 * 5 4 3 7 7 C 1.36930 * 120.00258 * 180.02562 * 6 5 4 8 8 H 1.08004 * 119.99823 * 0.02562 * 7 6 5 9 9 C 1.38815 * 120.00439 * 179.97438 * 7 6 5 10 10 N 1.31618 * 119.99225 * 0.02562 * 9 7 6 11 11 Si 1.86794 * 120.00268 * 179.97438 * 9 7 6 12 12 H 1.48499 * 109.47312 * 60.00457 * 11 9 7 13 13 H 1.48506 * 109.46866 * 180.02562 * 11 9 7 14 14 H 1.48499 * 109.47236 * 300.00219 * 11 9 7 15 15 C 1.34774 * 119.99782 * 269.99447 * 3 2 1 16 16 O 1.21285 * 119.99988 * 180.02562 * 15 3 2 17 17 C 1.50706 * 120.00178 * 0.02562 * 15 3 2 18 18 H 1.08994 * 115.55215 * 34.40794 * 17 15 3 19 19 C 1.53003 * 117.49502 * 248.74260 * 17 15 3 20 20 C 1.53005 * 117.49853 * 180.08523 * 17 15 3 21 21 H 1.08999 * 117.49333 * 359.97438 * 20 17 15 22 22 C 1.52994 * 117.49531 * 214.97637 * 20 17 15 23 23 C 1.53001 * 117.50137 * 128.62032 * 22 20 17 24 24 C 1.52997 * 60.00165 * 252.50957 * 23 22 20 25 25 H 1.09001 * 109.47714 * 300.00032 * 1 2 3 26 26 H 1.08996 * 109.47389 * 60.00345 * 1 2 3 27 27 H 1.09003 * 109.47066 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47069 * 239.99984 * 2 1 3 29 29 H 1.09000 * 109.46920 * 119.99791 * 2 1 3 30 30 H 1.09001 * 109.47062 * 149.99949 * 4 3 2 31 31 H 1.08996 * 109.47565 * 29.99414 * 4 3 2 32 32 H 1.09001 * 109.47289 * 60.00079 * 5 4 3 33 33 H 1.09004 * 109.47261 * 300.00335 * 5 4 3 34 34 H 0.97001 * 119.99251 * 0.02562 * 6 5 4 35 35 H 0.97000 * 119.99950 * 179.97438 * 10 9 7 36 36 H 1.09003 * 117.49734 * 0.02562 * 19 17 15 37 37 H 1.08996 * 117.49906 * 145.01682 * 19 17 15 38 38 H 1.08997 * 115.54843 * 274.32581 * 22 20 17 39 39 H 1.09000 * 117.49612 * 359.97438 * 23 22 20 40 40 H 1.08996 * 117.49981 * 145.01034 * 23 22 20 41 41 H 1.08997 * 117.49632 * 252.51256 * 24 23 22 42 42 H 1.08999 * 117.51874 * 107.47670 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.2624 2.0718 1.2687 5 6 0.9874 2.7931 1.7103 6 7 1.2317 3.4842 2.9788 7 6 0.2276 4.2019 3.5719 8 1 -0.7445 4.2581 3.1048 9 6 0.4589 4.8563 4.7741 10 7 1.6435 4.7873 5.3435 11 14 -0.9106 5.8360 5.5828 12 1 -2.0546 4.9365 5.8784 13 1 -0.4112 6.4343 6.8469 14 1 -1.3544 6.9164 4.6658 15 6 2.2429 2.0165 -1.1672 16 8 2.6476 3.1599 -1.1672 17 6 1.9914 1.3062 -2.4724 18 1 1.1547 0.6077 -2.4738 19 6 3.2080 0.9530 -3.3303 20 6 2.2674 2.0806 -3.7628 21 1 2.6305 3.1039 -3.6676 22 6 1.3481 1.8148 -4.9565 23 6 0.7136 3.0259 -5.6430 24 6 -0.1441 2.1014 -4.7767 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 3.0643 2.7985 1.1384 31 1 2.5504 1.3452 2.0284 32 1 0.1855 2.0664 1.8406 33 1 0.6993 3.5197 0.9506 34 1 2.1048 3.4333 3.3985 35 1 1.8053 5.2449 6.1834 36 1 4.1903 1.2340 -2.9505 37 1 3.1715 0.0223 -3.8964 38 1 1.6259 0.9682 -5.5844 39 1 0.9508 4.0121 -5.2440 40 1 0.5740 2.9765 -6.7229 41 1 -0.8479 1.4437 -5.2866 42 1 -0.4708 2.4790 -3.8078 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699208413.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:07 Heat of formation + Delta-G solvation = 2.471385 kcal Electronic energy + Delta-G solvation = -20312.181261 eV Core-core repulsion = 17293.303411 eV Total energy + Delta-G solvation = -3018.877850 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.37350 -39.06167 -37.56984 -36.36202 -35.83063 -33.54296 -31.59821 -29.62389 -26.60057 -25.18832 -24.50262 -23.70568 -23.25089 -22.89128 -20.98198 -19.95119 -19.24530 -18.34415 -17.26786 -16.82723 -16.49386 -16.23255 -15.83197 -15.39035 -15.16563 -15.04907 -14.80676 -14.58403 -14.00541 -13.78509 -13.42737 -13.16986 -12.93295 -12.76919 -12.61674 -12.52430 -12.39088 -12.28927 -12.18617 -11.98931 -11.85282 -11.82880 -11.77766 -11.01893 -10.98571 -10.81147 -10.53960 -9.77217 -9.09971 -8.00659 -5.31953 1.42388 1.44512 1.48161 1.54359 1.90779 2.52930 2.67149 3.03987 3.32093 3.44290 3.69141 3.79576 3.96339 4.00346 4.10318 4.15971 4.16941 4.21395 4.25968 4.36101 4.44002 4.49990 4.52956 4.61043 4.79454 4.81129 4.81484 4.91311 4.99834 5.02842 5.04638 5.10617 5.22327 5.28624 5.36423 5.39532 5.44085 5.56915 6.20594 6.40954 7.15600 7.26536 7.97634 8.23921 9.22613 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.023705 B = 0.003873 C = 0.003692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.919318 B = 7227.104162 C = 7582.730622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.101 3.899 3 N -0.601 5.601 4 C 0.121 3.879 5 C 0.151 3.849 6 N -0.743 5.743 7 C -0.255 4.255 8 H 0.071 0.929 9 C -0.071 4.071 10 N -0.968 5.968 11 Si 0.979 3.021 12 H -0.272 1.272 13 H -0.290 1.290 14 H -0.281 1.281 15 C 0.530 3.470 16 O -0.593 6.593 17 C -0.185 4.185 18 H 0.150 0.850 19 C -0.120 4.120 20 C -0.104 4.104 21 H 0.084 0.916 22 C -0.118 4.118 23 C -0.183 4.183 24 C -0.178 4.178 25 H 0.039 0.961 26 H 0.054 0.946 27 H 0.095 0.905 28 H 0.112 0.888 29 H 0.092 0.908 30 H 0.056 0.944 31 H 0.096 0.904 32 H 0.034 0.966 33 H -0.008 1.008 34 H 0.375 0.625 35 H 0.254 0.746 36 H 0.089 0.911 37 H 0.143 0.857 38 H 0.135 0.865 39 H 0.077 0.923 40 H 0.114 0.886 41 H 0.115 0.885 42 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.703 -15.865 -21.876 27.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.021 4.021 3 N -0.333 5.333 4 C -0.003 4.003 5 C 0.023 3.977 6 N -0.387 5.387 7 C -0.387 4.387 8 H 0.089 0.911 9 C -0.264 4.264 10 N -0.618 5.618 11 Si 0.807 3.193 12 H -0.198 1.198 13 H -0.215 1.215 14 H -0.207 1.207 15 C 0.320 3.680 16 O -0.474 6.474 17 C -0.205 4.205 18 H 0.168 0.832 19 C -0.157 4.157 20 C -0.123 4.123 21 H 0.103 0.897 22 C -0.135 4.135 23 C -0.219 4.219 24 C -0.215 4.215 25 H 0.058 0.942 26 H 0.073 0.927 27 H 0.114 0.886 28 H 0.130 0.870 29 H 0.111 0.889 30 H 0.074 0.926 31 H 0.114 0.886 32 H 0.052 0.948 33 H 0.010 0.990 34 H 0.207 0.793 35 H 0.063 0.937 36 H 0.107 0.893 37 H 0.161 0.839 38 H 0.153 0.847 39 H 0.095 0.905 40 H 0.132 0.868 41 H 0.133 0.867 42 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -0.661 -15.232 -21.841 26.636 hybrid contribution -0.304 1.246 1.204 1.759 sum -0.965 -13.986 -20.637 24.949 Atomic orbital electron populations 1.22297 0.95594 1.03585 1.01680 1.21933 0.94805 0.79980 1.05337 1.47978 1.65254 1.15483 1.04539 1.21357 0.96677 0.96800 0.85456 1.21015 0.96536 0.93550 0.86593 1.42402 1.12892 1.60355 1.23014 1.19547 0.92885 1.23467 1.02758 0.91080 1.25638 0.99532 1.02501 0.98711 1.69812 1.23026 1.48990 1.19934 0.85144 0.78383 0.78479 0.77331 1.19790 1.21538 1.20701 1.20544 0.75894 0.85566 0.85956 1.90694 1.48335 1.20298 1.88054 1.22343 1.04801 1.05433 0.87953 0.83214 1.23186 0.92632 1.00394 0.99452 1.21808 1.01153 0.97080 0.92252 0.89744 1.21804 0.93069 1.00888 0.97779 1.23051 1.04483 0.94680 0.99735 1.22999 0.93501 1.03754 1.01263 0.94208 0.92731 0.88606 0.87025 0.88933 0.92565 0.88563 0.94805 0.98972 0.79267 0.93684 0.89257 0.83918 0.84699 0.90453 0.86788 0.86689 0.90681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.23 10.12 71.98 0.73 -2.50 16 2 C 0.10 1.87 5.80 86.38 0.50 2.37 16 3 N -0.60 -17.46 2.47 -821.83 -2.03 -19.50 16 4 C 0.12 4.45 5.56 86.38 0.48 4.93 16 5 C 0.15 6.81 6.58 86.38 0.57 7.38 16 6 N -0.74 -41.06 5.60 -343.44 -1.92 -42.98 16 7 C -0.26 -15.21 9.99 84.04 0.84 -14.37 16 8 H 0.07 4.10 7.83 -2.91 -0.02 4.08 16 9 C -0.07 -4.27 5.50 84.86 0.47 -3.80 16 10 N -0.97 -61.13 13.06 21.65 0.28 -60.85 16 11 Si 0.98 47.63 29.55 68.60 2.03 49.66 16 12 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 13 H -0.29 -13.95 7.11 99.48 0.71 -13.24 16 14 H -0.28 -13.34 7.11 99.48 0.71 -12.64 16 15 C 0.53 16.81 7.46 87.66 0.65 17.47 16 16 O -0.59 -25.36 15.84 -3.05 -0.05 -25.41 16 17 C -0.18 -3.83 4.44 -11.54 -0.05 -3.88 16 18 H 0.15 2.33 6.48 -2.39 -0.02 2.31 16 19 C -0.12 -1.88 9.96 30.62 0.30 -1.57 16 20 C -0.10 -2.14 5.38 -10.77 -0.06 -2.20 16 21 H 0.08 2.34 7.67 -2.39 -0.02 2.32 16 22 C -0.12 -1.77 5.87 -10.79 -0.06 -1.83 16 23 C -0.18 -2.96 10.25 30.59 0.31 -2.64 16 24 C -0.18 -2.83 10.18 30.59 0.31 -2.52 16 25 H 0.04 0.99 6.26 -2.39 -0.01 0.97 16 26 H 0.05 1.03 7.45 -2.39 -0.02 1.01 16 27 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 28 H 0.11 1.37 6.64 -2.39 -0.02 1.35 16 29 H 0.09 1.53 7.89 -2.39 -0.02 1.52 16 30 H 0.06 2.38 7.42 -2.39 -0.02 2.36 16 31 H 0.10 3.14 7.89 -2.39 -0.02 3.12 16 32 H 0.03 1.46 6.26 -2.39 -0.01 1.44 16 33 H -0.01 -0.39 8.14 -2.38 -0.02 -0.41 16 34 H 0.38 21.60 7.67 -92.71 -0.71 20.89 16 35 H 0.25 15.45 8.31 -92.71 -0.77 14.68 16 36 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 37 H 0.14 1.17 8.14 -2.39 -0.02 1.15 16 38 H 0.14 1.33 8.14 -2.39 -0.02 1.31 16 39 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 40 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 41 H 0.11 1.33 8.14 -2.39 -0.02 1.31 16 42 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 Total: -1.00 -76.98 346.01 3.59 -73.39 By element: Atomic # 1 Polarization: 28.58 SS G_CDS: 0.29 Total: 28.87 kcal Atomic # 6 Polarization: -8.17 SS G_CDS: 5.00 Total: -3.18 kcal Atomic # 7 Polarization: -119.65 SS G_CDS: -3.67 Total: -123.33 kcal Atomic # 8 Polarization: -25.36 SS G_CDS: -0.05 Total: -25.41 kcal Atomic # 14 Polarization: 47.63 SS G_CDS: 2.03 Total: 49.66 kcal Total: -76.98 3.59 -73.39 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699208413.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.862 kcal (2) G-P(sol) polarization free energy of solvation -76.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.391 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds