Wall clock time and date at job start Mon Mar 30 2020 01:26:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36942 * 119.99696 * 2 1 4 4 H 1.08004 * 120.00069 * 203.03838 * 3 2 1 5 5 C 1.38814 * 119.99969 * 23.04458 * 3 2 1 6 6 N 1.31618 * 120.00030 * 12.92719 * 5 3 2 7 7 Si 1.86799 * 119.99900 * 192.92808 * 5 3 2 8 8 H 1.48496 * 109.47101 * 89.99566 * 7 5 3 9 9 H 1.48501 * 109.47220 * 209.99806 * 7 5 3 10 10 H 1.48498 * 109.47034 * 329.99849 * 7 5 3 11 11 C 1.46500 * 120.00520 * 179.97438 * 2 1 3 12 12 C 1.53001 * 109.46725 * 90.00465 * 11 2 1 13 13 C 1.53005 * 109.46880 * 180.02562 * 12 11 2 14 14 N 1.46499 * 109.46930 * 179.97438 * 13 12 11 15 15 C 1.34781 * 119.99849 * 179.97438 * 14 13 12 16 16 O 1.21286 * 119.99744 * 0.02562 * 15 14 13 17 17 C 1.50691 * 119.99961 * 180.02562 * 15 14 13 18 18 C 1.53002 * 119.29641 * 250.23084 * 17 15 14 19 19 C 1.52996 * 60.37865 * 248.69098 * 18 17 15 20 20 H 1.09004 * 119.29630 * 111.30709 * 19 18 17 21 21 C 1.54267 * 118.20352 * 266.38123 * 19 18 17 22 22 C 1.54889 * 104.19277 * 87.79015 * 21 19 18 23 23 C 1.54266 * 117.41795 * 44.57324 * 17 15 14 24 24 H 1.08990 * 109.48000 * 275.12366 * 1 2 3 25 25 H 1.09004 * 109.46692 * 155.11852 * 1 2 3 26 26 H 1.08998 * 109.47206 * 35.12797 * 1 2 3 27 27 H 0.97003 * 120.00250 * 180.02562 * 6 5 3 28 28 H 1.08994 * 109.47555 * 210.00824 * 11 2 1 29 29 H 1.09003 * 109.46444 * 330.00770 * 11 2 1 30 30 H 1.08998 * 109.46959 * 299.99861 * 12 11 2 31 31 H 1.08997 * 109.47042 * 60.00295 * 12 11 2 32 32 H 1.08999 * 109.46755 * 300.00052 * 13 12 11 33 33 H 1.09004 * 109.47097 * 59.99751 * 13 12 11 34 34 H 0.96998 * 119.99944 * 0.02562 * 14 13 12 35 35 H 1.08996 * 117.46299 * 356.29510 * 18 17 15 36 36 H 1.09005 * 117.45879 * 141.09372 * 18 17 15 37 37 H 1.08993 * 110.48856 * 206.47259 * 21 19 18 38 38 H 1.09003 * 110.47804 * 329.11174 * 21 19 18 39 39 H 1.08994 * 110.75571 * 80.37323 * 22 21 19 40 40 H 1.09003 * 110.75083 * 203.56481 * 22 21 19 41 41 H 1.09001 * 110.48728 * 235.05145 * 23 17 15 42 42 H 1.09004 * 110.47925 * 357.69015 * 23 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.1650 1.2234 -0.3660 5 6 1.5385 2.3402 0.4706 6 7 0.4116 2.2597 1.1458 7 14 2.3157 4.0074 0.1456 8 1 1.7987 4.5534 -1.1350 9 1 1.9756 4.9365 1.2530 10 1 3.7906 3.8579 0.0602 11 6 2.1976 -1.2687 0.0006 12 6 2.4527 -1.7108 -1.4418 13 6 3.2173 -3.0361 -1.4412 14 7 3.4610 -3.4598 -2.8223 15 6 4.1236 -4.6075 -3.0681 16 8 4.5176 -5.2897 -2.1459 17 6 4.3748 -5.0430 -4.4887 18 6 3.6249 -6.2557 -5.0437 19 6 5.1334 -6.3440 -4.8044 20 1 5.5107 -6.9873 -4.0094 21 6 6.0781 -6.0284 -5.9825 22 6 6.2855 -4.4956 -5.9030 23 6 4.8657 -3.9715 -5.4839 24 1 -0.3635 0.0918 1.0234 25 1 -0.3633 -0.9323 -0.4324 26 1 -0.3633 0.8405 -0.5913 27 1 -0.0156 3.0663 1.4743 28 1 3.1499 -1.1381 0.5144 29 1 1.6084 -2.0281 0.5147 30 1 1.5003 -1.8414 -1.9556 31 1 3.0417 -0.9513 -1.9558 32 1 4.1696 -2.9059 -0.9272 33 1 2.6278 -3.7954 -0.9272 34 1 3.1462 -2.9140 -3.5597 35 1 2.9747 -6.8009 -4.3596 36 1 3.2820 -6.2049 -6.0771 37 1 7.0279 -6.5488 -5.8598 38 1 5.6118 -6.3018 -6.9290 39 1 7.0295 -4.2451 -5.1469 40 1 6.5736 -4.0939 -6.8745 41 1 4.2071 -3.9263 -6.3514 42 1 4.9248 -2.9977 -4.9975 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001712960637.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:18 Heat of formation + Delta-G solvation = -2.688035 kcal Electronic energy + Delta-G solvation = -19951.533363 eV Core-core repulsion = 16932.431783 eV Total energy + Delta-G solvation = -3019.101580 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.60344 -38.26573 -36.21350 -34.73275 -32.04213 -31.82147 -30.13212 -28.59177 -25.98565 -25.46063 -23.43578 -22.39924 -21.65376 -20.63830 -20.35810 -19.04483 -17.27826 -16.71576 -15.94801 -15.57131 -15.15023 -14.92989 -14.54768 -13.99765 -13.62876 -13.43793 -13.35071 -13.23677 -12.89198 -12.65927 -12.06551 -11.68290 -11.48308 -11.44333 -11.32961 -11.26298 -11.00669 -10.80395 -10.78115 -10.62329 -10.47254 -10.19418 -9.97198 -9.86277 -9.79591 -9.66675 -8.94304 -8.53971 -6.73387 -5.71157 -3.18531 2.51133 3.17252 3.38287 3.42478 3.44567 3.46065 4.14188 4.33995 4.47390 4.50460 4.72515 4.91360 5.04256 5.12266 5.22032 5.24501 5.36914 5.43179 5.44276 5.46887 5.54306 5.62436 5.73963 5.76899 5.83909 5.91159 5.91861 6.07161 6.11396 6.20662 6.42403 6.59894 6.75511 6.77289 6.94706 7.38177 7.58725 7.74252 7.81446 8.28149 8.41331 9.25091 9.88650 10.37814 11.33584 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.031072 B = 0.003274 C = 0.003088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.919657 B = 8549.880169 C = 9065.210245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.162 3.838 2 N -0.603 5.603 3 C -0.256 4.256 4 H 0.068 0.932 5 C 0.001 3.999 6 N -0.908 5.908 7 Si 0.905 3.095 8 H -0.288 1.288 9 H -0.291 1.291 10 H -0.279 1.279 11 C 0.155 3.845 12 C -0.150 4.150 13 C 0.120 3.880 14 N -0.721 5.721 15 C 0.552 3.448 16 O -0.546 6.546 17 C -0.180 4.180 18 C -0.124 4.124 19 C -0.128 4.128 20 H 0.119 0.881 21 C -0.096 4.096 22 C -0.122 4.122 23 C -0.088 4.088 24 H 0.031 0.969 25 H -0.003 1.003 26 H 0.040 0.960 27 H 0.252 0.748 28 H 0.049 0.951 29 H 0.037 0.963 30 H 0.059 0.941 31 H 0.066 0.934 32 H 0.065 0.935 33 H 0.063 0.937 34 H 0.401 0.599 35 H 0.102 0.898 36 H 0.101 0.899 37 H 0.073 0.927 38 H 0.071 0.929 39 H 0.070 0.930 40 H 0.071 0.929 41 H 0.076 0.924 42 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.359 -15.076 -15.484 22.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.326 5.326 3 C -0.386 4.386 4 H 0.086 0.914 5 C -0.197 4.197 6 N -0.553 5.553 7 Si 0.735 3.265 8 H -0.215 1.215 9 H -0.217 1.217 10 H -0.205 1.205 11 C 0.027 3.973 12 C -0.191 4.191 13 C -0.004 4.004 14 N -0.372 5.372 15 C 0.338 3.662 16 O -0.424 6.424 17 C -0.183 4.183 18 C -0.162 4.162 19 C -0.146 4.146 20 H 0.137 0.863 21 C -0.134 4.134 22 C -0.160 4.160 23 C -0.125 4.125 24 H 0.049 0.951 25 H 0.016 0.984 26 H 0.058 0.942 27 H 0.062 0.938 28 H 0.067 0.933 29 H 0.056 0.944 30 H 0.078 0.922 31 H 0.084 0.916 32 H 0.083 0.917 33 H 0.082 0.918 34 H 0.235 0.765 35 H 0.120 0.880 36 H 0.120 0.880 37 H 0.091 0.909 38 H 0.089 0.911 39 H 0.089 0.911 40 H 0.090 0.910 41 H 0.094 0.906 42 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 7.522 -15.385 -14.684 22.558 hybrid contribution 0.092 1.330 -0.404 1.393 sum 7.614 -14.055 -15.087 21.980 Atomic orbital electron populations 1.20789 0.82680 0.95303 0.99479 1.43896 1.01848 1.00677 1.86161 1.19204 0.98284 0.85650 1.35423 0.91418 1.25038 0.97935 0.98564 0.98189 1.70073 1.19474 1.27160 1.38591 0.86249 0.78764 0.84134 0.77364 1.21534 1.21743 1.20474 1.20596 0.96346 0.88502 0.91844 1.22526 0.99457 0.94182 1.02899 1.21470 1.00379 0.96963 0.81567 1.46074 1.57589 1.23731 1.09761 1.19335 0.77270 0.80753 0.88856 1.90687 1.51496 1.54396 1.45774 1.22407 1.09324 0.92195 0.94379 1.23109 0.94211 0.96909 1.01922 1.23358 0.92526 0.98314 1.00437 0.86300 1.21983 0.98704 0.95985 0.96710 1.23034 0.96732 0.94759 1.01459 1.22331 0.96366 0.96724 0.97102 0.95078 0.98418 0.94168 0.93763 0.93285 0.94423 0.92230 0.91565 0.91663 0.91840 0.76530 0.87977 0.88043 0.90866 0.91081 0.91090 0.91025 0.90579 0.90544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.03 8.98 59.84 0.54 4.57 16 2 N -0.60 -15.26 2.92 -181.12 -0.53 -15.79 16 3 C -0.26 -7.07 9.65 -15.06 -0.15 -7.21 16 4 H 0.07 1.82 7.86 -52.48 -0.41 1.41 16 5 C 0.00 0.03 5.10 -17.43 -0.09 -0.06 16 6 N -0.91 -26.74 10.71 55.49 0.59 -26.15 16 7 Si 0.90 21.90 29.57 -169.99 -5.03 16.87 16 8 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 9 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 10 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 11 C 0.16 3.17 5.64 -4.04 -0.02 3.15 16 12 C -0.15 -2.50 5.65 -26.73 -0.15 -2.65 16 13 C 0.12 1.79 5.67 -4.04 -0.02 1.77 16 14 N -0.72 -9.46 5.38 -60.29 -0.32 -9.79 16 15 C 0.55 7.77 7.42 -10.99 -0.08 7.69 16 16 O -0.55 -9.78 16.79 5.55 0.09 -9.69 16 17 C -0.18 -1.88 2.63 -154.55 -0.41 -2.29 16 18 C -0.12 -1.09 9.85 -26.73 -0.26 -1.35 16 19 C -0.13 -1.22 6.54 -89.50 -0.59 -1.80 16 20 H 0.12 1.28 8.14 -51.93 -0.42 0.85 16 21 C -0.10 -0.71 6.63 -25.07 -0.17 -0.87 16 22 C -0.12 -0.93 6.96 -23.54 -0.16 -1.10 16 23 C -0.09 -0.74 6.34 -23.88 -0.15 -0.89 16 24 H 0.03 0.84 7.34 -51.93 -0.38 0.45 16 25 H 0.00 -0.06 8.03 -51.93 -0.42 -0.48 16 26 H 0.04 1.06 7.34 -51.93 -0.38 0.68 16 27 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 28 H 0.05 1.01 8.04 -51.93 -0.42 0.59 16 29 H 0.04 0.73 8.07 -51.93 -0.42 0.31 16 30 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 32 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 34 H 0.40 4.40 7.94 -40.82 -0.32 4.07 16 35 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 38 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 39 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.08 0.67 7.56 -51.93 -0.39 0.27 16 LS Contribution 341.98 15.07 5.15 5.15 Total: -1.00 -32.13 341.98 -9.11 -41.24 By element: Atomic # 1 Polarization: 6.56 SS G_CDS: -7.35 Total: -0.80 kcal Atomic # 6 Polarization: 0.66 SS G_CDS: -1.71 Total: -1.06 kcal Atomic # 7 Polarization: -51.46 SS G_CDS: -0.26 Total: -51.72 kcal Atomic # 8 Polarization: -9.78 SS G_CDS: 0.09 Total: -9.69 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.03 Total: 16.87 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -32.13 -9.11 -41.24 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001712960637.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.548 kcal (2) G-P(sol) polarization free energy of solvation -32.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds