Wall clock time and date at job start Mon Mar 30 2020 01:26:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36942 * 119.99696 * 2 1 4 4 H 1.08004 * 120.00069 * 203.03838 * 3 2 1 5 5 C 1.38814 * 119.99969 * 23.04458 * 3 2 1 6 6 N 1.31618 * 120.00030 * 12.92719 * 5 3 2 7 7 Si 1.86799 * 119.99900 * 192.92808 * 5 3 2 8 8 H 1.48496 * 109.47101 * 89.99566 * 7 5 3 9 9 H 1.48501 * 109.47220 * 209.99806 * 7 5 3 10 10 H 1.48498 * 109.47034 * 329.99849 * 7 5 3 11 11 C 1.46500 * 120.00520 * 179.97438 * 2 1 3 12 12 C 1.53001 * 109.46725 * 90.00465 * 11 2 1 13 13 C 1.53005 * 109.46880 * 180.02562 * 12 11 2 14 14 N 1.46499 * 109.46930 * 179.97438 * 13 12 11 15 15 C 1.34781 * 119.99849 * 179.97438 * 14 13 12 16 16 O 1.21286 * 119.99744 * 0.02562 * 15 14 13 17 17 C 1.50691 * 119.99961 * 180.02562 * 15 14 13 18 18 C 1.53002 * 119.29641 * 250.23084 * 17 15 14 19 19 C 1.52996 * 60.37865 * 248.69098 * 18 17 15 20 20 H 1.09004 * 119.29630 * 111.30709 * 19 18 17 21 21 C 1.54267 * 118.20352 * 266.38123 * 19 18 17 22 22 C 1.54889 * 104.19277 * 87.79015 * 21 19 18 23 23 C 1.54266 * 117.41795 * 44.57324 * 17 15 14 24 24 H 1.08990 * 109.48000 * 275.12366 * 1 2 3 25 25 H 1.09004 * 109.46692 * 155.11852 * 1 2 3 26 26 H 1.08998 * 109.47206 * 35.12797 * 1 2 3 27 27 H 0.97003 * 120.00250 * 180.02562 * 6 5 3 28 28 H 1.08994 * 109.47555 * 210.00824 * 11 2 1 29 29 H 1.09003 * 109.46444 * 330.00770 * 11 2 1 30 30 H 1.08998 * 109.46959 * 299.99861 * 12 11 2 31 31 H 1.08997 * 109.47042 * 60.00295 * 12 11 2 32 32 H 1.08999 * 109.46755 * 300.00052 * 13 12 11 33 33 H 1.09004 * 109.47097 * 59.99751 * 13 12 11 34 34 H 0.96998 * 119.99944 * 0.02562 * 14 13 12 35 35 H 1.08996 * 117.46299 * 356.29510 * 18 17 15 36 36 H 1.09005 * 117.45879 * 141.09372 * 18 17 15 37 37 H 1.08993 * 110.48856 * 206.47259 * 21 19 18 38 38 H 1.09003 * 110.47804 * 329.11174 * 21 19 18 39 39 H 1.08994 * 110.75571 * 80.37323 * 22 21 19 40 40 H 1.09003 * 110.75083 * 203.56481 * 22 21 19 41 41 H 1.09001 * 110.48728 * 235.05145 * 23 17 15 42 42 H 1.09004 * 110.47925 * 357.69015 * 23 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.1650 1.2234 -0.3660 5 6 1.5385 2.3402 0.4706 6 7 0.4116 2.2597 1.1458 7 14 2.3157 4.0074 0.1456 8 1 1.7987 4.5534 -1.1350 9 1 1.9756 4.9365 1.2530 10 1 3.7906 3.8579 0.0602 11 6 2.1976 -1.2687 0.0006 12 6 2.4527 -1.7108 -1.4418 13 6 3.2173 -3.0361 -1.4412 14 7 3.4610 -3.4598 -2.8223 15 6 4.1236 -4.6075 -3.0681 16 8 4.5176 -5.2897 -2.1459 17 6 4.3748 -5.0430 -4.4887 18 6 3.6249 -6.2557 -5.0437 19 6 5.1334 -6.3440 -4.8044 20 1 5.5107 -6.9873 -4.0094 21 6 6.0781 -6.0284 -5.9825 22 6 6.2855 -4.4956 -5.9030 23 6 4.8657 -3.9715 -5.4839 24 1 -0.3635 0.0918 1.0234 25 1 -0.3633 -0.9323 -0.4324 26 1 -0.3633 0.8405 -0.5913 27 1 -0.0156 3.0663 1.4743 28 1 3.1499 -1.1381 0.5144 29 1 1.6084 -2.0281 0.5147 30 1 1.5003 -1.8414 -1.9556 31 1 3.0417 -0.9513 -1.9558 32 1 4.1696 -2.9059 -0.9272 33 1 2.6278 -3.7954 -0.9272 34 1 3.1462 -2.9140 -3.5597 35 1 2.9747 -6.8009 -4.3596 36 1 3.2820 -6.2049 -6.0771 37 1 7.0279 -6.5488 -5.8598 38 1 5.6118 -6.3018 -6.9290 39 1 7.0295 -4.2451 -5.1469 40 1 6.5736 -4.0939 -6.8745 41 1 4.2071 -3.9263 -6.3514 42 1 4.9248 -2.9977 -4.9975 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001712960637.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:18 Heat of formation + Delta-G solvation = -22.038574 kcal Electronic energy + Delta-G solvation = -19952.372465 eV Core-core repulsion = 16932.431783 eV Total energy + Delta-G solvation = -3019.940682 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.51046 -39.24982 -37.92300 -36.20386 -33.80138 -32.47737 -31.78664 -29.40540 -27.95420 -27.03713 -24.55700 -23.45705 -22.81172 -22.11112 -21.24206 -20.07912 -18.73213 -18.14613 -17.23253 -16.77506 -16.72768 -15.95087 -15.79231 -15.45063 -14.99975 -14.72660 -14.58411 -14.33139 -14.04833 -13.89605 -13.40008 -13.07496 -12.84195 -12.80177 -12.63356 -12.51633 -12.30438 -12.09982 -12.06172 -11.97635 -11.88820 -11.84540 -11.50561 -11.35591 -10.77114 -10.68655 -10.61370 -10.12741 -8.78581 -7.82658 -5.32772 1.47035 1.47237 1.47847 1.57052 2.12547 2.51608 2.63462 3.30507 3.47614 3.63217 3.63997 3.72850 3.90775 4.08797 4.23680 4.27297 4.40947 4.44795 4.49034 4.61794 4.62899 4.73691 4.78274 4.80500 4.84835 4.90181 4.97512 5.01879 5.15617 5.18871 5.24121 5.26537 5.28155 5.41301 5.46441 5.48567 5.63251 5.70877 6.32880 6.52786 7.15210 7.19946 7.87103 8.30969 9.20460 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.031072 B = 0.003274 C = 0.003088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.919657 B = 8549.880169 C = 9065.210245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.175 3.825 2 N -0.621 5.621 3 C -0.264 4.264 4 H 0.072 0.928 5 C -0.056 4.056 6 N -0.941 5.941 7 Si 0.970 3.030 8 H -0.284 1.284 9 H -0.296 1.296 10 H -0.268 1.268 11 C 0.150 3.850 12 C -0.126 4.126 13 C 0.131 3.869 14 N -0.713 5.713 15 C 0.547 3.453 16 O -0.592 6.592 17 C -0.193 4.193 18 C -0.109 4.109 19 C -0.134 4.134 20 H 0.098 0.902 21 C -0.090 4.090 22 C -0.122 4.122 23 C -0.084 4.084 24 H 0.003 0.997 25 H 0.033 0.967 26 H 0.016 0.984 27 H 0.248 0.752 28 H 0.042 0.958 29 H 0.049 0.951 30 H 0.066 0.934 31 H 0.060 0.940 32 H 0.055 0.945 33 H 0.061 0.939 34 H 0.413 0.587 35 H 0.092 0.908 36 H 0.131 0.869 37 H 0.077 0.923 38 H 0.092 0.908 39 H 0.054 0.946 40 H 0.092 0.908 41 H 0.098 0.902 42 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.013 -15.480 -18.032 25.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.344 5.344 3 C -0.394 4.394 4 H 0.090 0.910 5 C -0.250 4.250 6 N -0.588 5.588 7 Si 0.798 3.202 8 H -0.211 1.211 9 H -0.223 1.223 10 H -0.193 1.193 11 C 0.024 3.976 12 C -0.166 4.166 13 C 0.006 3.994 14 N -0.363 5.363 15 C 0.335 3.665 16 O -0.473 6.473 17 C -0.196 4.196 18 C -0.146 4.146 19 C -0.153 4.153 20 H 0.116 0.884 21 C -0.127 4.127 22 C -0.160 4.160 23 C -0.122 4.122 24 H 0.021 0.979 25 H 0.051 0.949 26 H 0.034 0.966 27 H 0.057 0.943 28 H 0.061 0.939 29 H 0.067 0.933 30 H 0.084 0.916 31 H 0.079 0.921 32 H 0.074 0.926 33 H 0.079 0.921 34 H 0.250 0.750 35 H 0.111 0.889 36 H 0.149 0.851 37 H 0.095 0.905 38 H 0.110 0.890 39 H 0.073 0.927 40 H 0.110 0.890 41 H 0.117 0.883 42 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 8.191 -15.805 -17.272 24.803 hybrid contribution -0.095 1.361 0.434 1.431 sum 8.097 -14.444 -16.837 23.615 Atomic orbital electron populations 1.20548 0.82795 0.96008 0.97623 1.44153 1.02156 1.01704 1.86410 1.19550 0.98544 0.86773 1.34555 0.91045 1.25835 0.98689 1.02042 0.98472 1.70241 1.20926 1.27632 1.39952 0.85217 0.78424 0.79657 0.76861 1.21085 1.22283 1.19271 1.20768 0.95699 0.86949 0.94215 1.22148 0.99876 0.94628 0.99995 1.21191 0.99540 0.95919 0.82713 1.45948 1.57253 1.23791 1.09342 1.20007 0.76218 0.80157 0.90136 1.90662 1.53327 1.55717 1.47582 1.22450 1.11035 0.93503 0.92623 1.23216 0.93491 0.94860 1.03074 1.23464 0.93666 0.97285 1.00892 0.88420 1.22001 0.98492 0.95746 0.96488 1.23051 0.95901 0.95017 1.02025 1.22384 0.97116 0.95535 0.97117 0.97863 0.94892 0.96563 0.94281 0.93914 0.93312 0.91554 0.92128 0.92635 0.92087 0.75028 0.88907 0.85143 0.90451 0.88997 0.92666 0.88964 0.88324 0.91203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.71 8.98 127.77 1.15 9.86 16 2 N -0.62 -31.23 2.92 -726.95 -2.12 -33.35 16 3 C -0.26 -14.52 9.65 84.03 0.81 -13.71 16 4 H 0.07 3.79 7.86 -2.91 -0.02 3.77 16 5 C -0.06 -3.13 5.10 84.86 0.43 -2.70 16 6 N -0.94 -56.28 10.71 21.65 0.23 -56.04 16 7 Si 0.97 45.07 29.57 68.60 2.03 47.10 16 8 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 9 H -0.30 -13.90 7.11 99.48 0.71 -13.19 16 10 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 11 C 0.15 6.01 5.64 86.38 0.49 6.50 16 12 C -0.13 -4.03 5.65 30.60 0.17 -3.86 16 13 C 0.13 3.79 5.67 86.38 0.49 4.28 16 14 N -0.71 -17.86 5.38 -463.05 -2.49 -20.35 16 15 C 0.55 15.09 7.42 87.65 0.65 15.74 16 16 O -0.59 -21.51 16.79 -3.05 -0.05 -21.56 16 17 C -0.19 -3.73 2.63 -52.21 -0.14 -3.87 16 18 C -0.11 -1.67 9.85 30.59 0.30 -1.37 16 19 C -0.13 -2.37 6.54 -10.07 -0.07 -2.44 16 20 H 0.10 2.13 8.14 -2.38 -0.02 2.11 16 21 C -0.09 -1.08 6.63 31.67 0.21 -0.87 16 22 C -0.12 -1.56 6.96 32.66 0.23 -1.33 16 23 C -0.08 -1.19 6.34 32.44 0.21 -0.98 16 24 H 0.00 0.17 7.34 -2.39 -0.02 0.15 16 25 H 0.03 1.37 8.03 -2.38 -0.02 1.35 16 26 H 0.02 0.85 7.34 -2.39 -0.02 0.83 16 27 H 0.25 14.39 8.31 -92.71 -0.77 13.62 16 28 H 0.04 1.75 8.04 -2.39 -0.02 1.73 16 29 H 0.05 1.83 8.07 -2.39 -0.02 1.81 16 30 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 31 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 32 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 33 H 0.06 1.82 8.14 -2.39 -0.02 1.81 16 34 H 0.41 8.27 7.94 -92.71 -0.74 7.54 16 35 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 36 H 0.13 1.25 8.14 -2.38 -0.02 1.23 16 37 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 38 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 39 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 40 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 41 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 42 H 0.07 1.07 7.56 -2.38 -0.02 1.05 16 Total: -1.00 -69.73 341.98 2.78 -66.96 By element: Atomic # 1 Polarization: 11.75 SS G_CDS: 0.25 Total: 11.99 kcal Atomic # 6 Polarization: 0.32 SS G_CDS: 4.93 Total: 5.25 kcal Atomic # 7 Polarization: -105.36 SS G_CDS: -4.38 Total: -109.74 kcal Atomic # 8 Polarization: -21.51 SS G_CDS: -0.05 Total: -21.56 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 2.03 Total: 47.10 kcal Total: -69.73 2.78 -66.96 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001712960637.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.920 kcal (2) G-P(sol) polarization free energy of solvation -69.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds