Wall clock time and date at job start Mon Mar 30 2020 01:26:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36933 * 119.99993 * 2 1 4 4 H 1.08003 * 120.00225 * 160.39017 * 3 2 1 5 5 C 1.38808 * 120.00070 * 340.38556 * 3 2 1 6 6 N 1.31614 * 120.00331 * 343.64104 * 5 3 2 7 7 Si 1.86802 * 119.99766 * 163.63741 * 5 3 2 8 8 H 1.48506 * 109.47271 * 84.99971 * 7 5 3 9 9 H 1.48508 * 109.47018 * 204.99382 * 7 5 3 10 10 H 1.48497 * 109.47545 * 324.99312 * 7 5 3 11 11 C 1.46503 * 120.00039 * 180.27787 * 2 1 3 12 12 C 1.53001 * 109.46889 * 269.72530 * 11 2 1 13 13 C 1.53007 * 109.46961 * 179.97438 * 12 11 2 14 14 N 1.46497 * 109.46964 * 179.97438 * 13 12 11 15 15 C 1.34778 * 120.00168 * 180.02562 * 14 13 12 16 16 O 1.21279 * 119.99637 * 359.97438 * 15 14 13 17 17 C 1.50693 * 120.00346 * 180.02562 * 15 14 13 18 18 H 1.09004 * 115.55903 * 34.26286 * 17 15 14 19 19 C 1.53126 * 117.51295 * 248.46237 * 17 15 14 20 20 C 1.52466 * 117.51601 * 179.97438 * 17 15 14 21 21 C 1.53259 * 128.58114 * 349.85009 * 20 17 15 22 22 C 1.53886 * 86.87805 * 194.88751 * 21 20 17 23 23 C 1.53251 * 128.58622 * 225.04900 * 20 17 15 24 24 H 1.09000 * 109.47637 * 85.19725 * 1 2 3 25 25 H 1.09007 * 109.47192 * 205.20143 * 1 2 3 26 26 H 1.09001 * 109.47215 * 325.19756 * 1 2 3 27 27 H 0.96997 * 120.00468 * 180.02562 * 6 5 3 28 28 H 1.09007 * 109.46998 * 29.71886 * 11 2 1 29 29 H 1.08997 * 109.47706 * 149.71875 * 11 2 1 30 30 H 1.08998 * 109.47010 * 299.99541 * 12 11 2 31 31 H 1.09002 * 109.47443 * 59.99661 * 12 11 2 32 32 H 1.08998 * 109.47088 * 299.99744 * 13 12 11 33 33 H 1.09002 * 109.47115 * 59.99710 * 13 12 11 34 34 H 0.96999 * 120.00269 * 0.02562 * 14 13 12 35 35 H 1.08989 * 117.51122 * 359.97438 * 19 17 15 36 36 H 1.09000 * 117.50924 * 145.10495 * 19 17 15 37 37 H 1.09001 * 113.64482 * 309.37749 * 21 20 17 38 38 H 1.08995 * 113.64987 * 80.38680 * 21 20 17 39 39 H 1.09002 * 113.58946 * 270.38396 * 22 21 20 40 40 H 1.09009 * 113.65810 * 139.58632 * 22 21 20 41 41 H 1.09000 * 113.64781 * 279.60682 * 23 20 17 42 42 H 1.09001 * 113.64434 * 50.61181 * 23 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1827 1.2130 0.3139 5 6 1.5160 2.3531 -0.4035 6 7 0.3893 2.2900 -1.0808 7 14 2.2625 4.0136 0.0148 8 1 3.2723 4.3753 -1.0123 9 1 1.1935 5.0441 0.0423 10 1 2.9150 3.9417 1.3468 11 6 2.1975 -1.2687 -0.0062 12 6 2.4584 -1.7139 1.4342 13 6 3.2229 -3.0393 1.4278 14 7 3.4733 -3.4652 2.8069 15 6 4.1370 -4.6133 3.0478 16 8 4.5265 -5.2940 2.1226 17 6 4.3941 -5.0517 4.4664 18 1 3.6129 -4.8025 5.1845 19 6 5.8431 -5.0324 4.9611 20 6 5.1494 -6.3599 4.6734 21 6 5.5175 -7.4256 3.6354 22 6 5.8127 -8.3593 4.8224 23 6 4.8330 -7.5030 5.6438 24 1 -0.3634 0.0860 -1.0240 25 1 -0.3634 -0.9299 0.4376 26 1 -0.3634 0.8438 0.5865 27 1 -0.0533 3.1056 -1.3631 28 1 1.6062 -2.0272 -0.5193 29 1 3.1477 -1.1373 -0.5237 30 1 3.0497 -0.9555 1.9474 31 1 1.5082 -1.8454 1.9517 32 1 2.6313 -3.7974 0.9148 33 1 4.1732 -2.9081 0.9102 34 1 3.1615 -2.9210 3.5469 35 1 6.6100 -4.7031 4.2603 36 1 6.0152 -4.7703 6.0050 37 1 4.6754 -7.7492 3.0236 38 1 6.3995 -7.1755 3.0458 39 1 6.8425 -8.3038 5.1754 40 1 5.4733 -9.3837 4.6681 41 1 5.1663 -7.3150 6.6645 42 1 3.8004 -7.8481 5.5910 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001712974087.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:35 Heat of formation + Delta-G solvation = 24.892129 kcal Electronic energy + Delta-G solvation = -19671.516490 eV Core-core repulsion = 16653.610876 eV Total energy + Delta-G solvation = -3017.905614 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.42721 -38.53850 -36.23088 -34.69513 -33.85896 -31.96117 -29.95170 -26.17405 -25.87791 -25.66280 -23.72831 -23.27264 -21.76121 -20.64256 -19.83213 -18.54304 -17.09848 -16.72028 -16.07187 -15.47769 -15.39192 -15.08945 -14.81401 -14.23704 -13.99509 -13.40352 -12.94061 -12.84450 -12.70113 -12.54429 -12.22691 -11.78397 -11.71571 -11.63755 -11.40588 -11.02357 -10.80756 -10.75502 -10.55916 -10.49018 -10.30454 -10.18702 -9.99323 -9.85831 -9.81233 -9.63746 -8.92475 -8.52165 -6.77046 -5.71953 -3.14747 2.51382 3.17198 3.38623 3.44878 3.46781 3.57046 4.19065 4.38949 4.51022 4.55330 4.56467 4.67370 4.97124 5.13572 5.23998 5.34747 5.42126 5.43843 5.46729 5.48682 5.59004 5.65118 5.72081 5.83454 5.91235 5.95173 6.09059 6.11164 6.19432 6.21668 6.42050 6.61112 6.74679 6.77139 6.94231 7.38874 7.60238 7.71818 7.81689 8.30574 8.39518 9.24508 9.89211 10.37131 11.33623 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.041968 B = 0.002872 C = 0.002781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 667.009510 B = 9747.204499 C =10064.143567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.163 3.837 2 N -0.604 5.604 3 C -0.255 4.255 4 H 0.069 0.931 5 C -0.001 4.001 6 N -0.908 5.908 7 Si 0.903 3.097 8 H -0.287 1.287 9 H -0.290 1.290 10 H -0.281 1.281 11 C 0.155 3.845 12 C -0.150 4.150 13 C 0.121 3.879 14 N -0.724 5.724 15 C 0.539 3.461 16 O -0.540 6.540 17 C -0.180 4.180 18 H 0.122 0.878 19 C -0.122 4.122 20 C -0.127 4.127 21 C -0.082 4.082 22 C -0.143 4.143 23 C -0.099 4.099 24 H 0.029 0.971 25 H -0.002 1.002 26 H 0.042 0.958 27 H 0.252 0.748 28 H 0.037 0.963 29 H 0.048 0.952 30 H 0.066 0.934 31 H 0.059 0.941 32 H 0.063 0.937 33 H 0.064 0.936 34 H 0.400 0.600 35 H 0.101 0.899 36 H 0.105 0.895 37 H 0.087 0.913 38 H 0.069 0.931 39 H 0.079 0.921 40 H 0.068 0.932 41 H 0.068 0.932 42 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.860 -17.372 14.073 23.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.326 5.326 3 C -0.384 4.384 4 H 0.087 0.913 5 C -0.199 4.199 6 N -0.553 5.553 7 Si 0.733 3.267 8 H -0.214 1.214 9 H -0.216 1.216 10 H -0.207 1.207 11 C 0.027 3.973 12 C -0.191 4.191 13 C -0.003 4.003 14 N -0.375 5.375 15 C 0.325 3.675 16 O -0.418 6.418 17 C -0.201 4.201 18 H 0.139 0.861 19 C -0.159 4.159 20 C -0.128 4.128 21 C -0.119 4.119 22 C -0.180 4.180 23 C -0.136 4.136 24 H 0.047 0.953 25 H 0.016 0.984 26 H 0.061 0.939 27 H 0.062 0.938 28 H 0.056 0.944 29 H 0.067 0.933 30 H 0.085 0.915 31 H 0.077 0.923 32 H 0.081 0.919 33 H 0.083 0.917 34 H 0.234 0.766 35 H 0.120 0.880 36 H 0.123 0.877 37 H 0.106 0.894 38 H 0.087 0.913 39 H 0.098 0.902 40 H 0.087 0.913 41 H 0.087 0.913 42 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 7.996 -17.696 13.294 23.533 hybrid contribution 0.013 1.481 0.601 1.599 sum 8.009 -16.215 13.895 22.806 Atomic orbital electron populations 1.20784 0.82590 0.95464 0.99372 1.43936 1.01908 1.00709 1.86093 1.19174 0.96454 0.84964 1.37822 0.91348 1.24949 0.97943 0.98333 0.98689 1.70097 1.19282 1.26723 1.39189 0.86307 0.78084 0.84030 0.78299 1.21388 1.21604 1.20698 1.20588 0.96290 0.88461 0.91943 1.22523 0.99472 0.94236 1.02838 1.21446 1.00268 0.96881 0.81689 1.46105 1.57938 1.23641 1.09777 1.19625 0.77598 0.80752 0.89557 1.90679 1.51337 1.54112 1.45631 1.22183 0.97630 1.04351 0.95931 0.86057 1.22796 0.92885 0.98085 1.02171 1.22293 1.02285 0.87660 1.00568 1.22318 1.01787 0.92929 0.94892 1.22818 0.99453 0.98174 0.97559 1.22507 0.99976 0.93970 0.97179 0.95319 0.98391 0.93888 0.93764 0.94420 0.93333 0.91536 0.92251 0.91870 0.91744 0.76596 0.88037 0.87670 0.89413 0.91271 0.90207 0.91289 0.91303 0.89624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.04 8.98 59.84 0.54 4.58 16 2 N -0.60 -15.28 2.93 -181.12 -0.53 -15.81 16 3 C -0.25 -7.03 9.67 -15.06 -0.15 -7.17 16 4 H 0.07 1.84 7.88 -52.48 -0.41 1.42 16 5 C 0.00 -0.03 5.03 -17.43 -0.09 -0.12 16 6 N -0.91 -26.75 10.71 55.49 0.59 -26.16 16 7 Si 0.90 21.90 29.58 -169.99 -5.03 16.87 16 8 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 9 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 10 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 11 C 0.16 3.16 5.65 -4.04 -0.02 3.14 16 12 C -0.15 -2.49 5.65 -26.73 -0.15 -2.64 16 13 C 0.12 1.78 5.67 -4.04 -0.02 1.76 16 14 N -0.72 -9.27 5.56 -60.30 -0.33 -9.60 16 15 C 0.54 7.30 7.61 -10.99 -0.08 7.21 16 16 O -0.54 -9.14 15.14 5.56 0.08 -9.05 16 17 C -0.18 -1.83 6.19 -91.98 -0.57 -2.40 16 18 H 0.12 0.99 8.14 -51.93 -0.42 0.57 16 19 C -0.12 -1.08 10.24 -26.92 -0.28 -1.36 16 20 C -0.13 -1.23 2.88 -154.77 -0.45 -1.68 16 21 C -0.08 -0.85 6.47 -26.14 -0.17 -1.02 16 22 C -0.14 -1.10 8.08 -25.81 -0.21 -1.31 16 23 C -0.10 -0.76 8.10 -26.14 -0.21 -0.97 16 24 H 0.03 0.77 7.43 -51.93 -0.39 0.38 16 25 H 0.00 -0.05 8.04 -51.93 -0.42 -0.47 16 26 H 0.04 1.14 7.18 -51.93 -0.37 0.77 16 27 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 28 H 0.04 0.72 8.07 -51.93 -0.42 0.31 16 29 H 0.05 0.99 8.04 -51.93 -0.42 0.58 16 30 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 31 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.40 4.22 8.47 -40.82 -0.35 3.88 16 35 H 0.10 0.98 8.14 -51.94 -0.42 0.56 16 36 H 0.11 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.09 1.02 8.05 -51.93 -0.42 0.60 16 38 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.07 0.47 8.14 -51.92 -0.42 0.05 16 41 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 42 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 LS Contribution 344.64 15.07 5.19 5.19 Total: -1.00 -31.82 344.64 -9.28 -41.10 By element: Atomic # 1 Polarization: 6.84 SS G_CDS: -7.40 Total: -0.56 kcal Atomic # 6 Polarization: -0.12 SS G_CDS: -1.86 Total: -1.98 kcal Atomic # 7 Polarization: -51.30 SS G_CDS: -0.27 Total: -51.57 kcal Atomic # 8 Polarization: -9.14 SS G_CDS: 0.08 Total: -9.05 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.03 Total: 16.87 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -31.82 -9.28 -41.10 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001712974087.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.990 kcal (2) G-P(sol) polarization free energy of solvation -31.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.098 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds