Wall clock time and date at job start Mon Mar 30 2020 01:26:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36933 * 119.99993 * 2 1 4 4 H 1.08003 * 120.00225 * 160.39017 * 3 2 1 5 5 C 1.38808 * 120.00070 * 340.38556 * 3 2 1 6 6 N 1.31614 * 120.00331 * 343.64104 * 5 3 2 7 7 Si 1.86802 * 119.99766 * 163.63741 * 5 3 2 8 8 H 1.48506 * 109.47271 * 84.99971 * 7 5 3 9 9 H 1.48508 * 109.47018 * 204.99382 * 7 5 3 10 10 H 1.48497 * 109.47545 * 324.99312 * 7 5 3 11 11 C 1.46503 * 120.00039 * 180.27787 * 2 1 3 12 12 C 1.53001 * 109.46889 * 269.72530 * 11 2 1 13 13 C 1.53007 * 109.46961 * 179.97438 * 12 11 2 14 14 N 1.46497 * 109.46964 * 179.97438 * 13 12 11 15 15 C 1.34778 * 120.00168 * 180.02562 * 14 13 12 16 16 O 1.21279 * 119.99637 * 359.97438 * 15 14 13 17 17 C 1.50693 * 120.00346 * 180.02562 * 15 14 13 18 18 H 1.09004 * 115.55903 * 34.26286 * 17 15 14 19 19 C 1.53126 * 117.51295 * 248.46237 * 17 15 14 20 20 C 1.52466 * 117.51601 * 179.97438 * 17 15 14 21 21 C 1.53259 * 128.58114 * 349.85009 * 20 17 15 22 22 C 1.53886 * 86.87805 * 194.88751 * 21 20 17 23 23 C 1.53251 * 128.58622 * 225.04900 * 20 17 15 24 24 H 1.09000 * 109.47637 * 85.19725 * 1 2 3 25 25 H 1.09007 * 109.47192 * 205.20143 * 1 2 3 26 26 H 1.09001 * 109.47215 * 325.19756 * 1 2 3 27 27 H 0.96997 * 120.00468 * 180.02562 * 6 5 3 28 28 H 1.09007 * 109.46998 * 29.71886 * 11 2 1 29 29 H 1.08997 * 109.47706 * 149.71875 * 11 2 1 30 30 H 1.08998 * 109.47010 * 299.99541 * 12 11 2 31 31 H 1.09002 * 109.47443 * 59.99661 * 12 11 2 32 32 H 1.08998 * 109.47088 * 299.99744 * 13 12 11 33 33 H 1.09002 * 109.47115 * 59.99710 * 13 12 11 34 34 H 0.96999 * 120.00269 * 0.02562 * 14 13 12 35 35 H 1.08989 * 117.51122 * 359.97438 * 19 17 15 36 36 H 1.09000 * 117.50924 * 145.10495 * 19 17 15 37 37 H 1.09001 * 113.64482 * 309.37749 * 21 20 17 38 38 H 1.08995 * 113.64987 * 80.38680 * 21 20 17 39 39 H 1.09002 * 113.58946 * 270.38396 * 22 21 20 40 40 H 1.09009 * 113.65810 * 139.58632 * 22 21 20 41 41 H 1.09000 * 113.64781 * 279.60682 * 23 20 17 42 42 H 1.09001 * 113.64434 * 50.61181 * 23 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1827 1.2130 0.3139 5 6 1.5160 2.3531 -0.4035 6 7 0.3893 2.2900 -1.0808 7 14 2.2625 4.0136 0.0148 8 1 3.2723 4.3753 -1.0123 9 1 1.1935 5.0441 0.0423 10 1 2.9150 3.9417 1.3468 11 6 2.1975 -1.2687 -0.0062 12 6 2.4584 -1.7139 1.4342 13 6 3.2229 -3.0393 1.4278 14 7 3.4733 -3.4652 2.8069 15 6 4.1370 -4.6133 3.0478 16 8 4.5265 -5.2940 2.1226 17 6 4.3941 -5.0517 4.4664 18 1 3.6129 -4.8025 5.1845 19 6 5.8431 -5.0324 4.9611 20 6 5.1494 -6.3599 4.6734 21 6 5.5175 -7.4256 3.6354 22 6 5.8127 -8.3593 4.8224 23 6 4.8330 -7.5030 5.6438 24 1 -0.3634 0.0860 -1.0240 25 1 -0.3634 -0.9299 0.4376 26 1 -0.3634 0.8438 0.5865 27 1 -0.0533 3.1056 -1.3631 28 1 1.6062 -2.0272 -0.5193 29 1 3.1477 -1.1373 -0.5237 30 1 3.0497 -0.9555 1.9474 31 1 1.5082 -1.8454 1.9517 32 1 2.6313 -3.7974 0.9148 33 1 4.1732 -2.9081 0.9102 34 1 3.1615 -2.9210 3.5469 35 1 6.6100 -4.7031 4.2603 36 1 6.0152 -4.7703 6.0050 37 1 4.6754 -7.7492 3.0236 38 1 6.3995 -7.1755 3.0458 39 1 6.8425 -8.3038 5.1754 40 1 5.4733 -9.3837 4.6681 41 1 5.1663 -7.3150 6.6645 42 1 3.8004 -7.8481 5.5910 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001712974087.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:34 Heat of formation + Delta-G solvation = 5.945743 kcal Electronic energy + Delta-G solvation = -19672.338067 eV Core-core repulsion = 16653.610876 eV Total energy + Delta-G solvation = -3018.727191 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.32228 -39.46833 -37.93693 -36.13456 -34.63077 -33.72065 -31.64140 -27.99645 -27.36901 -26.55580 -24.97062 -23.93140 -23.20585 -22.16133 -21.00886 -19.29441 -18.74039 -18.06129 -17.24015 -16.71908 -16.63381 -16.08433 -15.94713 -15.62792 -15.33545 -15.00850 -14.62166 -14.52848 -13.71804 -13.41508 -13.22774 -13.05880 -12.96056 -12.79790 -12.63152 -12.50123 -12.42417 -12.33067 -12.28954 -12.09286 -11.83754 -11.51536 -11.28264 -11.01894 -10.82890 -10.65740 -10.55303 -10.06902 -8.82163 -7.83522 -5.28898 1.46913 1.48075 1.51368 1.57385 2.15527 2.52201 2.79505 3.29603 3.44072 3.64477 3.69360 3.80580 3.90151 3.97881 4.09545 4.11579 4.30569 4.46266 4.52172 4.62704 4.65945 4.78880 4.80643 4.84569 4.86692 4.90669 4.91765 5.04291 5.10405 5.17344 5.25146 5.27578 5.40897 5.45707 5.50288 5.52799 5.61745 5.70465 6.31383 6.59019 7.14590 7.27165 7.87603 8.30392 9.20522 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.041968 B = 0.002872 C = 0.002781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 667.009510 B = 9747.204499 C =10064.143567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.176 3.824 2 N -0.622 5.622 3 C -0.262 4.262 4 H 0.073 0.927 5 C -0.058 4.058 6 N -0.941 5.941 7 Si 0.969 3.031 8 H -0.285 1.285 9 H -0.294 1.294 10 H -0.270 1.270 11 C 0.150 3.850 12 C -0.126 4.126 13 C 0.133 3.867 14 N -0.717 5.717 15 C 0.533 3.467 16 O -0.581 6.581 17 C -0.186 4.186 18 H 0.148 0.852 19 C -0.110 4.110 20 C -0.138 4.138 21 C -0.096 4.096 22 C -0.133 4.133 23 C -0.089 4.089 24 H 0.001 0.999 25 H 0.033 0.967 26 H 0.018 0.982 27 H 0.248 0.752 28 H 0.049 0.951 29 H 0.042 0.958 30 H 0.059 0.941 31 H 0.065 0.935 32 H 0.060 0.940 33 H 0.054 0.946 34 H 0.413 0.587 35 H 0.088 0.912 36 H 0.135 0.865 37 H 0.067 0.933 38 H 0.050 0.950 39 H 0.089 0.911 40 H 0.077 0.923 41 H 0.088 0.912 42 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.668 -17.968 16.622 25.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.345 5.345 3 C -0.392 4.392 4 H 0.090 0.910 5 C -0.253 4.253 6 N -0.588 5.588 7 Si 0.797 3.203 8 H -0.211 1.211 9 H -0.220 1.220 10 H -0.195 1.195 11 C 0.023 3.977 12 C -0.167 4.167 13 C 0.008 3.992 14 N -0.368 5.368 15 C 0.321 3.679 16 O -0.461 6.461 17 C -0.206 4.206 18 H 0.165 0.835 19 C -0.147 4.147 20 C -0.139 4.139 21 C -0.133 4.133 22 C -0.171 4.171 23 C -0.126 4.126 24 H 0.019 0.981 25 H 0.051 0.949 26 H 0.037 0.963 27 H 0.057 0.943 28 H 0.067 0.933 29 H 0.061 0.939 30 H 0.078 0.922 31 H 0.084 0.916 32 H 0.078 0.922 33 H 0.073 0.927 34 H 0.250 0.750 35 H 0.106 0.894 36 H 0.153 0.847 37 H 0.086 0.914 38 H 0.069 0.931 39 H 0.108 0.892 40 H 0.096 0.904 41 H 0.107 0.893 42 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 8.822 -18.311 15.880 25.794 hybrid contribution -0.205 1.582 -0.257 1.616 sum 8.617 -16.729 15.623 24.458 Atomic orbital electron populations 1.20545 0.82715 0.96147 0.97530 1.44205 1.02221 1.01763 1.86321 1.19522 0.96763 0.86087 1.36828 0.90957 1.25755 0.98702 1.01769 0.99070 1.70261 1.20761 1.27154 1.40616 0.85271 0.77090 0.79593 0.78368 1.21126 1.22007 1.19489 1.20770 0.95658 0.86888 0.94340 1.22144 0.99884 0.94753 0.99890 1.21144 0.99387 0.95723 0.82935 1.45981 1.57737 1.23773 1.09304 1.20264 0.76636 0.80189 0.90776 1.90666 1.52912 1.55263 1.47255 1.22224 0.99284 1.05089 0.94040 0.83479 1.22893 0.91414 0.97044 1.03375 1.22503 1.02467 0.88002 1.00916 1.22319 1.00353 0.94978 0.95656 1.22802 1.00255 0.98168 0.95831 1.22493 1.00113 0.92340 0.97623 0.98101 0.94859 0.96305 0.94290 0.93310 0.93926 0.92183 0.91606 0.92186 0.92718 0.75019 0.89375 0.84708 0.91426 0.93128 0.89220 0.90441 0.89319 0.89312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.73 8.98 127.77 1.15 9.88 16 2 N -0.62 -31.26 2.93 -726.93 -2.13 -33.39 16 3 C -0.26 -14.40 9.67 84.03 0.81 -13.59 16 4 H 0.07 3.83 7.88 -2.91 -0.02 3.81 16 5 C -0.06 -3.29 5.03 84.86 0.43 -2.87 16 6 N -0.94 -56.35 10.71 21.65 0.23 -56.12 16 7 Si 0.97 45.10 29.58 68.60 2.03 47.13 16 8 H -0.28 -13.03 7.11 99.48 0.71 -12.33 16 9 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 10 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 11 C 0.15 5.97 5.65 86.38 0.49 6.46 16 12 C -0.13 -4.01 5.65 30.60 0.17 -3.84 16 13 C 0.13 3.77 5.67 86.38 0.49 4.26 16 14 N -0.72 -17.23 5.56 -463.06 -2.57 -19.80 16 15 C 0.53 13.93 7.61 87.65 0.67 14.59 16 16 O -0.58 -19.82 15.14 -3.03 -0.05 -19.87 16 17 C -0.19 -3.37 6.19 -11.68 -0.07 -3.44 16 18 H 0.15 1.89 8.14 -2.39 -0.02 1.87 16 19 C -0.11 -1.69 10.24 30.48 0.31 -1.38 16 20 C -0.14 -2.42 2.88 -52.35 -0.15 -2.57 16 21 C -0.10 -1.97 6.47 30.98 0.20 -1.77 16 22 C -0.13 -1.81 8.08 31.19 0.25 -1.56 16 23 C -0.09 -1.10 8.10 30.98 0.25 -0.85 16 24 H 0.00 0.04 7.43 -2.39 -0.02 0.02 16 25 H 0.03 1.38 8.04 -2.38 -0.02 1.36 16 26 H 0.02 0.99 7.18 -2.39 -0.02 0.97 16 27 H 0.25 14.41 8.31 -92.71 -0.77 13.64 16 28 H 0.05 1.82 8.07 -2.38 -0.02 1.81 16 29 H 0.04 1.73 8.04 -2.39 -0.02 1.71 16 30 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 31 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 32 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 33 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 34 H 0.41 7.74 8.47 -92.71 -0.79 6.96 16 35 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 36 H 0.13 1.28 8.14 -2.39 -0.02 1.26 16 37 H 0.07 1.63 8.05 -2.39 -0.02 1.61 16 38 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 39 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 40 H 0.08 0.92 8.14 -2.38 -0.02 0.90 16 41 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 42 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 Total: -1.00 -69.11 344.64 2.71 -66.40 By element: Atomic # 1 Polarization: 12.12 SS G_CDS: 0.20 Total: 12.32 kcal Atomic # 6 Polarization: -1.66 SS G_CDS: 5.00 Total: 3.34 kcal Atomic # 7 Polarization: -104.84 SS G_CDS: -4.47 Total: -109.31 kcal Atomic # 8 Polarization: -19.82 SS G_CDS: -0.05 Total: -19.87 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 2.03 Total: 47.13 kcal Total: -69.11 2.71 -66.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001712974087.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.341 kcal (2) G-P(sol) polarization free energy of solvation -69.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.396 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds