Wall clock time and date at job start Mon Mar 30 2020 01:33:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46488 * 1 3 3 C 1.46499 * 120.00081 * 2 1 4 4 C 1.52997 * 109.47543 * 89.99662 * 3 2 1 5 5 N 1.46499 * 109.47520 * 180.02562 * 4 3 2 6 6 C 1.36930 * 120.00359 * 180.02562 * 5 4 3 7 7 H 1.07999 * 119.99856 * 359.97438 * 6 5 4 8 8 C 1.38809 * 120.00272 * 180.27502 * 6 5 4 9 9 N 1.31616 * 119.99828 * 359.71619 * 8 6 5 10 10 Si 1.86803 * 120.00098 * 179.72091 * 8 6 5 11 11 H 1.48501 * 109.47022 * 60.00058 * 10 8 6 12 12 H 1.48509 * 109.47010 * 179.97438 * 10 8 6 13 13 H 1.48503 * 109.47071 * 299.99739 * 10 8 6 14 14 C 1.34781 * 120.00227 * 179.97438 * 2 1 3 15 15 O 1.21283 * 119.99797 * 180.02562 * 14 2 1 16 16 C 1.50699 * 119.99900 * 359.97438 * 14 2 1 17 17 H 1.09005 * 115.55006 * 54.16264 * 16 14 2 18 18 C 1.53085 * 117.51233 * 199.93833 * 16 14 2 19 19 C 1.52546 * 117.51083 * 268.44352 * 16 14 2 20 20 C 1.53876 * 120.82461 * 142.33697 * 19 16 14 21 21 C 1.54996 * 104.06225 * 192.35368 * 20 19 16 22 22 C 1.54923 * 102.81514 * 37.56700 * 21 20 19 23 23 C 1.53477 * 121.09278 * 2.96173 * 19 16 14 24 24 H 1.09003 * 109.47168 * 90.00740 * 1 2 3 25 25 H 1.09003 * 109.47583 * 209.99982 * 1 2 3 26 26 H 1.08998 * 109.47754 * 330.00116 * 1 2 3 27 27 H 1.09008 * 109.47249 * 329.99637 * 3 2 1 28 28 H 1.09001 * 109.47052 * 209.99852 * 3 2 1 29 29 H 1.09001 * 109.47036 * 60.00425 * 4 3 2 30 30 H 1.09001 * 109.47101 * 300.00160 * 4 3 2 31 31 H 0.97005 * 119.99975 * 359.97438 * 5 4 3 32 32 H 0.97008 * 120.00283 * 179.97438 * 9 8 6 33 33 H 1.08997 * 117.51339 * 214.91911 * 18 16 14 34 34 H 1.09001 * 117.50719 * 0.02562 * 18 16 14 35 35 H 1.08999 * 110.51281 * 310.99842 * 20 19 16 36 36 H 1.09000 * 110.51439 * 73.71394 * 20 19 16 37 37 H 1.08992 * 110.74708 * 279.23428 * 21 20 19 38 38 H 1.09003 * 110.89688 * 155.96612 * 21 20 19 39 39 H 1.09004 * 110.47994 * 203.58792 * 22 21 20 40 40 H 1.09004 * 110.59167 * 81.02086 * 22 21 20 41 41 H 1.09005 * 110.07586 * 263.31415 * 23 19 16 42 42 H 1.09006 * 110.06892 * 24.79183 * 23 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4524 1.7105 1.4424 5 7 3.1844 2.9795 1.4424 6 6 3.5270 3.5723 2.6282 7 1 3.2573 3.1046 3.5636 8 6 4.2156 4.7776 2.6282 9 7 4.5440 5.3478 1.4884 10 14 4.6762 5.5902 4.2460 11 1 5.5498 4.6780 5.0270 12 1 5.4015 6.8574 3.9745 13 1 3.4441 5.8810 5.0223 14 6 2.1388 -1.1672 0.0005 15 8 3.3517 -1.1671 0.0010 16 6 1.3854 -2.4723 0.0017 17 1 0.6513 -2.5921 -0.7952 18 6 2.1373 -3.7226 0.4652 19 6 1.0654 -3.1000 1.3547 20 6 -0.2743 -3.8182 1.5937 21 6 -0.3290 -4.0116 3.1306 22 6 0.3020 -2.7013 3.6645 23 6 1.4369 -2.3919 2.6647 24 1 -0.3634 -0.0001 -1.0277 25 1 -0.3634 -0.8900 0.5138 26 1 -0.3634 0.8899 0.5138 27 1 1.6083 2.0284 -0.5139 28 1 3.1498 1.1383 -0.5138 29 1 3.0415 0.9509 1.9563 30 1 1.4999 1.8409 1.9562 31 1 3.4269 3.3995 0.6023 32 1 5.0249 6.1903 1.4883 33 1 1.8983 -4.6653 -0.0268 34 1 3.1769 -3.6009 0.7697 35 1 -1.1053 -3.1983 1.2570 36 1 -0.2863 -4.7830 1.0867 37 1 0.2625 -4.8759 3.4322 38 1 -1.3589 -4.1117 3.4734 39 1 0.7063 -2.8530 4.6654 40 1 -0.4326 -1.8960 3.6689 41 1 2.3839 -2.7772 3.0428 42 1 1.5095 -1.3166 2.5011 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713650320.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:37 Heat of formation + Delta-G solvation = -8.716750 kcal Electronic energy + Delta-G solvation = -20717.584265 eV Core-core repulsion = 17698.221261 eV Total energy + Delta-G solvation = -3019.363004 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.44056 -38.34714 -35.87704 -34.34515 -34.13189 -31.34948 -28.93884 -28.38980 -26.59678 -25.72650 -24.51329 -22.82027 -21.33888 -20.89392 -19.51667 -18.34655 -17.15258 -16.85212 -16.16145 -15.78562 -15.31529 -14.95755 -14.34496 -14.08087 -13.55545 -13.36590 -13.17653 -13.15822 -12.86377 -12.76959 -12.51553 -12.28784 -12.03295 -11.33039 -11.28662 -11.17187 -11.12382 -10.96900 -10.86760 -10.74783 -10.65058 -10.36479 -10.11865 -9.95301 -9.73284 -9.46468 -8.83912 -8.43917 -6.90247 -5.73044 -3.02233 2.66169 3.08456 3.46982 3.50924 3.52436 3.66007 4.20257 4.41611 4.60293 4.63940 4.65291 4.79775 4.96722 5.10560 5.17694 5.28846 5.39659 5.44826 5.51114 5.54811 5.60239 5.64220 5.69200 5.71345 5.72244 5.78475 5.88680 5.92635 5.97304 6.01103 6.08054 6.15994 6.17733 6.20359 6.61294 6.78150 6.95490 7.57277 7.72438 8.37792 8.45690 9.56214 10.12686 10.47915 11.49892 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.023682 B = 0.004324 C = 0.003971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1182.052124 B = 6474.443575 C = 7050.210577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.608 5.608 3 C 0.107 3.893 4 C 0.144 3.856 5 N -0.730 5.730 6 C -0.238 4.238 7 H 0.069 0.931 8 C -0.013 4.013 9 N -0.934 5.934 10 Si 0.909 3.091 11 H -0.286 1.286 12 H -0.290 1.290 13 H -0.286 1.286 14 C 0.541 3.459 15 O -0.532 6.532 16 C -0.176 4.176 17 H 0.123 0.877 18 C -0.137 4.137 19 C -0.104 4.104 20 C -0.088 4.088 21 C -0.121 4.121 22 C -0.122 4.122 23 C -0.096 4.096 24 H 0.053 0.947 25 H 0.071 0.929 26 H 0.074 0.926 27 H 0.076 0.924 28 H 0.084 0.916 29 H 0.022 0.978 30 H 0.017 0.983 31 H 0.384 0.616 32 H 0.256 0.744 33 H 0.101 0.899 34 H 0.106 0.894 35 H 0.071 0.929 36 H 0.067 0.933 37 H 0.067 0.933 38 H 0.066 0.934 39 H 0.066 0.934 40 H 0.067 0.933 41 H 0.069 0.931 42 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.603 -19.695 -1.993 24.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.341 5.341 3 C -0.016 4.016 4 C 0.016 3.984 5 N -0.375 5.375 6 C -0.369 4.369 7 H 0.087 0.913 8 C -0.209 4.209 9 N -0.583 5.583 10 Si 0.739 3.261 11 H -0.212 1.212 12 H -0.216 1.216 13 H -0.213 1.213 14 C 0.328 3.672 15 O -0.408 6.408 16 C -0.197 4.197 17 H 0.141 0.859 18 C -0.174 4.174 19 C -0.104 4.104 20 C -0.126 4.126 21 C -0.159 4.159 22 C -0.159 4.159 23 C -0.133 4.133 24 H 0.071 0.929 25 H 0.090 0.910 26 H 0.093 0.907 27 H 0.095 0.905 28 H 0.102 0.898 29 H 0.040 0.960 30 H 0.035 0.965 31 H 0.217 0.783 32 H 0.066 0.934 33 H 0.119 0.881 34 H 0.124 0.876 35 H 0.090 0.910 36 H 0.086 0.914 37 H 0.086 0.914 38 H 0.085 0.915 39 H 0.085 0.915 40 H 0.086 0.914 41 H 0.088 0.912 42 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -12.934 -19.629 -1.824 23.577 hybrid contribution 0.256 0.778 0.465 0.942 sum -12.677 -18.850 -1.359 22.757 Atomic orbital electron populations 1.21781 0.79742 1.03400 1.01452 1.47728 1.06908 1.06116 1.73364 1.21713 0.97468 0.83242 0.99144 1.20891 0.94998 0.89338 0.93190 1.42207 1.67111 1.21610 1.06578 1.19156 1.29643 1.02201 0.85940 0.91296 1.24739 1.01299 0.97982 0.96899 1.69653 1.45191 1.19426 1.23996 0.86246 0.78115 0.78681 0.83018 1.21233 1.21623 1.21265 1.19622 0.87351 0.84249 0.75931 1.90724 1.13811 1.87100 1.49185 1.22284 1.04265 0.93050 1.00117 0.85894 1.23061 0.98122 0.94906 1.01319 1.21844 0.97262 1.00867 0.90440 1.21929 0.94632 0.99444 0.96563 1.22465 1.00632 0.97992 0.94804 1.22337 0.97625 0.97405 0.98545 1.21712 0.98804 1.00487 0.92290 0.92886 0.91025 0.90716 0.90512 0.89771 0.96046 0.96515 0.78268 0.93442 0.88099 0.87565 0.91007 0.91422 0.91413 0.91485 0.91499 0.91429 0.91185 0.91062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.84 10.24 59.84 0.61 1.45 16 2 N -0.61 -9.03 2.87 -181.58 -0.52 -9.55 16 3 C 0.11 1.92 5.52 -4.04 -0.02 1.90 16 4 C 0.14 3.15 6.58 -4.04 -0.03 3.12 16 5 N -0.73 -19.53 5.60 -59.91 -0.34 -19.87 16 6 C -0.24 -6.96 9.99 -15.06 -0.15 -7.11 16 7 H 0.07 1.96 7.83 -52.49 -0.41 1.54 16 8 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 9 N -0.93 -28.97 13.06 55.49 0.72 -28.24 16 10 Si 0.91 22.97 29.55 -169.99 -5.02 17.94 16 11 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 12 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 13 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 14 C 0.54 8.56 6.15 -10.98 -0.07 8.49 16 15 O -0.53 -10.81 16.03 5.55 0.09 -10.72 16 16 C -0.18 -2.02 4.25 -91.96 -0.39 -2.41 16 17 H 0.12 1.13 8.11 -51.93 -0.42 0.71 16 18 C -0.14 -1.47 9.74 -26.91 -0.26 -1.73 16 19 C -0.10 -1.06 2.21 -154.26 -0.34 -1.40 16 20 C -0.09 -0.68 6.58 -25.22 -0.17 -0.84 16 21 C -0.12 -0.92 6.91 -24.66 -0.17 -1.09 16 22 C -0.12 -1.14 6.84 -24.99 -0.17 -1.31 16 23 C -0.10 -1.12 6.18 -25.76 -0.16 -1.28 16 24 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.07 0.64 6.68 -51.93 -0.35 0.29 16 26 H 0.07 0.78 8.07 -51.93 -0.42 0.37 16 27 H 0.08 1.27 8.07 -51.92 -0.42 0.85 16 28 H 0.08 1.69 7.42 -51.93 -0.39 1.30 16 29 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.38 10.64 7.67 -40.82 -0.31 10.33 16 32 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 33 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.11 1.36 7.82 -51.93 -0.41 0.95 16 35 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.07 0.45 8.11 -51.93 -0.42 0.03 16 37 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.07 1.01 7.25 -51.93 -0.38 0.64 16 LS Contribution 341.90 15.07 5.15 5.15 Total: -1.00 -33.89 341.90 -8.61 -42.50 By element: Atomic # 1 Polarization: 12.77 SS G_CDS: -7.28 Total: 5.49 kcal Atomic # 6 Polarization: -1.29 SS G_CDS: -1.41 Total: -2.70 kcal Atomic # 7 Polarization: -57.53 SS G_CDS: -0.13 Total: -57.66 kcal Atomic # 8 Polarization: -10.81 SS G_CDS: 0.09 Total: -10.72 kcal Atomic # 14 Polarization: 22.97 SS G_CDS: -5.02 Total: 17.94 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -33.89 -8.61 -42.50 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713650320.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.785 kcal (2) G-P(sol) polarization free energy of solvation -33.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds