Wall clock time and date at job start Mon Mar 30 2020 01:33:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46488 * 1 3 3 C 1.46499 * 120.00081 * 2 1 4 4 C 1.52997 * 109.47543 * 89.99662 * 3 2 1 5 5 N 1.46499 * 109.47520 * 180.02562 * 4 3 2 6 6 C 1.36930 * 120.00359 * 180.02562 * 5 4 3 7 7 H 1.07999 * 119.99856 * 359.97438 * 6 5 4 8 8 C 1.38809 * 120.00272 * 180.27502 * 6 5 4 9 9 N 1.31616 * 119.99828 * 359.71619 * 8 6 5 10 10 Si 1.86803 * 120.00098 * 179.72091 * 8 6 5 11 11 H 1.48501 * 109.47022 * 60.00058 * 10 8 6 12 12 H 1.48509 * 109.47010 * 179.97438 * 10 8 6 13 13 H 1.48503 * 109.47071 * 299.99739 * 10 8 6 14 14 C 1.34781 * 120.00227 * 179.97438 * 2 1 3 15 15 O 1.21283 * 119.99797 * 180.02562 * 14 2 1 16 16 C 1.50699 * 119.99900 * 359.97438 * 14 2 1 17 17 H 1.09005 * 115.55006 * 54.16264 * 16 14 2 18 18 C 1.53085 * 117.51233 * 199.93833 * 16 14 2 19 19 C 1.52546 * 117.51083 * 268.44352 * 16 14 2 20 20 C 1.53876 * 120.82461 * 142.33697 * 19 16 14 21 21 C 1.54996 * 104.06225 * 192.35368 * 20 19 16 22 22 C 1.54923 * 102.81514 * 37.56700 * 21 20 19 23 23 C 1.53477 * 121.09278 * 2.96173 * 19 16 14 24 24 H 1.09003 * 109.47168 * 90.00740 * 1 2 3 25 25 H 1.09003 * 109.47583 * 209.99982 * 1 2 3 26 26 H 1.08998 * 109.47754 * 330.00116 * 1 2 3 27 27 H 1.09008 * 109.47249 * 329.99637 * 3 2 1 28 28 H 1.09001 * 109.47052 * 209.99852 * 3 2 1 29 29 H 1.09001 * 109.47036 * 60.00425 * 4 3 2 30 30 H 1.09001 * 109.47101 * 300.00160 * 4 3 2 31 31 H 0.97005 * 119.99975 * 359.97438 * 5 4 3 32 32 H 0.97008 * 120.00283 * 179.97438 * 9 8 6 33 33 H 1.08997 * 117.51339 * 214.91911 * 18 16 14 34 34 H 1.09001 * 117.50719 * 0.02562 * 18 16 14 35 35 H 1.08999 * 110.51281 * 310.99842 * 20 19 16 36 36 H 1.09000 * 110.51439 * 73.71394 * 20 19 16 37 37 H 1.08992 * 110.74708 * 279.23428 * 21 20 19 38 38 H 1.09003 * 110.89688 * 155.96612 * 21 20 19 39 39 H 1.09004 * 110.47994 * 203.58792 * 22 21 20 40 40 H 1.09004 * 110.59167 * 81.02086 * 22 21 20 41 41 H 1.09005 * 110.07586 * 263.31415 * 23 19 16 42 42 H 1.09006 * 110.06892 * 24.79183 * 23 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4524 1.7105 1.4424 5 7 3.1844 2.9795 1.4424 6 6 3.5270 3.5723 2.6282 7 1 3.2573 3.1046 3.5636 8 6 4.2156 4.7776 2.6282 9 7 4.5440 5.3478 1.4884 10 14 4.6762 5.5902 4.2460 11 1 5.5498 4.6780 5.0270 12 1 5.4015 6.8574 3.9745 13 1 3.4441 5.8810 5.0223 14 6 2.1388 -1.1672 0.0005 15 8 3.3517 -1.1671 0.0010 16 6 1.3854 -2.4723 0.0017 17 1 0.6513 -2.5921 -0.7952 18 6 2.1373 -3.7226 0.4652 19 6 1.0654 -3.1000 1.3547 20 6 -0.2743 -3.8182 1.5937 21 6 -0.3290 -4.0116 3.1306 22 6 0.3020 -2.7013 3.6645 23 6 1.4369 -2.3919 2.6647 24 1 -0.3634 -0.0001 -1.0277 25 1 -0.3634 -0.8900 0.5138 26 1 -0.3634 0.8899 0.5138 27 1 1.6083 2.0284 -0.5139 28 1 3.1498 1.1383 -0.5138 29 1 3.0415 0.9509 1.9563 30 1 1.4999 1.8409 1.9562 31 1 3.4269 3.3995 0.6023 32 1 5.0249 6.1903 1.4883 33 1 1.8983 -4.6653 -0.0268 34 1 3.1769 -3.6009 0.7697 35 1 -1.1053 -3.1983 1.2570 36 1 -0.2863 -4.7830 1.0867 37 1 0.2625 -4.8759 3.4322 38 1 -1.3589 -4.1117 3.4734 39 1 0.7063 -2.8530 4.6654 40 1 -0.4326 -1.8960 3.6689 41 1 2.3839 -2.7772 3.0428 42 1 1.5095 -1.3166 2.5011 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713650320.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:37 Heat of formation + Delta-G solvation = -30.297222 kcal Electronic energy + Delta-G solvation = -20718.520065 eV Core-core repulsion = 17698.221261 eV Total energy + Delta-G solvation = -3020.298804 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.52550 -39.36307 -37.41925 -36.08203 -35.06061 -33.38796 -30.12868 -29.65640 -27.63563 -26.72656 -26.04314 -24.43278 -22.90225 -21.67190 -20.48880 -19.52190 -19.12573 -18.01909 -17.30900 -16.90372 -16.61359 -16.22128 -15.83394 -15.49659 -15.18647 -14.96511 -14.65051 -14.22032 -13.95458 -13.82892 -13.36978 -13.18378 -13.11685 -13.04821 -12.86979 -12.74916 -12.38388 -12.19842 -12.03919 -11.99358 -11.90483 -11.84191 -11.41842 -11.24885 -11.00943 -10.96436 -10.56211 -9.72622 -9.11208 -8.00683 -5.32290 1.43552 1.47805 1.48344 1.54508 1.91176 2.53337 2.74515 3.31819 3.34346 3.62113 3.75021 3.82049 3.90952 4.02411 4.13308 4.19228 4.25662 4.34160 4.35271 4.50221 4.55078 4.69493 4.73298 4.77745 4.86434 4.89624 4.94126 4.96115 4.99897 5.04300 5.08539 5.13199 5.24672 5.26924 5.38039 5.38802 5.49698 5.52336 6.20266 6.38731 7.15093 7.26412 7.96947 8.23376 9.22518 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.023682 B = 0.004324 C = 0.003971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1182.052124 B = 6474.443575 C = 7050.210577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.606 5.606 3 C 0.120 3.880 4 C 0.153 3.847 5 N -0.743 5.743 6 C -0.255 4.255 7 H 0.071 0.929 8 C -0.070 4.070 9 N -0.968 5.968 10 Si 0.979 3.021 11 H -0.281 1.281 12 H -0.290 1.290 13 H -0.272 1.272 14 C 0.532 3.468 15 O -0.591 6.591 16 C -0.176 4.176 17 H 0.159 0.841 18 C -0.141 4.141 19 C -0.092 4.092 20 C -0.081 4.081 21 C -0.116 4.116 22 C -0.120 4.120 23 C -0.102 4.102 24 H 0.080 0.920 25 H 0.092 0.908 26 H 0.075 0.925 27 H 0.097 0.903 28 H 0.057 0.943 29 H -0.006 1.006 30 H 0.029 0.971 31 H 0.376 0.624 32 H 0.254 0.746 33 H 0.134 0.866 34 H 0.074 0.926 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.069 0.931 38 H 0.086 0.914 39 H 0.064 0.936 40 H 0.070 0.930 41 H 0.049 0.951 42 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.417 -21.191 -1.707 26.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.338 5.338 3 C -0.004 4.004 4 C 0.026 3.974 5 N -0.386 5.386 6 C -0.387 4.387 7 H 0.089 0.911 8 C -0.263 4.263 9 N -0.617 5.617 10 Si 0.806 3.194 11 H -0.207 1.207 12 H -0.215 1.215 13 H -0.198 1.198 14 C 0.322 3.678 15 O -0.472 6.472 16 C -0.197 4.197 17 H 0.176 0.824 18 C -0.178 4.178 19 C -0.093 4.093 20 C -0.118 4.118 21 C -0.154 4.154 22 C -0.158 4.158 23 C -0.140 4.140 24 H 0.099 0.901 25 H 0.111 0.889 26 H 0.094 0.906 27 H 0.115 0.885 28 H 0.075 0.925 29 H 0.012 0.988 30 H 0.047 0.953 31 H 0.208 0.792 32 H 0.063 0.937 33 H 0.152 0.848 34 H 0.093 0.907 35 H 0.107 0.893 36 H 0.106 0.894 37 H 0.088 0.912 38 H 0.105 0.895 39 H 0.083 0.917 40 H 0.089 0.911 41 H 0.068 0.932 42 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -15.813 -21.158 -1.530 26.459 hybrid contribution 1.157 1.227 0.397 1.733 sum -14.656 -19.930 -1.133 24.765 Atomic orbital electron populations 1.22092 0.76537 1.04553 1.03603 1.47829 1.08759 1.04650 1.72542 1.21347 0.97323 0.85446 0.96240 1.20893 0.94111 0.86700 0.95737 1.42388 1.67652 1.22933 1.05655 1.19538 1.29680 1.02618 0.86838 0.91062 1.25634 1.01438 0.98644 1.00582 1.69814 1.45984 1.19717 1.26224 0.85149 0.78110 0.77342 0.78757 1.20685 1.21539 1.19784 1.20500 0.86992 0.85851 0.74463 1.90693 1.16593 1.88021 1.51852 1.22316 1.04773 0.90516 1.02085 0.82393 1.23133 0.96781 0.96010 1.01871 1.21921 0.98611 1.00027 0.88704 1.21984 0.92892 1.00315 0.96600 1.22471 1.01545 0.96566 0.94791 1.22338 0.96745 0.98899 0.97784 1.21728 0.99222 0.98567 0.94467 0.90143 0.88909 0.90598 0.88501 0.92494 0.98776 0.95311 0.79229 0.93678 0.84824 0.90700 0.89328 0.89363 0.91235 0.89516 0.91708 0.91108 0.93172 0.94256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.36 10.24 127.77 1.31 2.67 16 2 N -0.61 -17.81 2.87 -846.77 -2.43 -20.24 16 3 C 0.12 4.44 5.52 86.38 0.48 4.92 16 4 C 0.15 6.92 6.58 86.38 0.57 7.49 16 5 N -0.74 -40.96 5.60 -343.46 -1.92 -42.88 16 6 C -0.26 -15.18 9.99 84.03 0.84 -14.34 16 7 H 0.07 4.10 7.83 -2.91 -0.02 4.08 16 8 C -0.07 -4.20 5.50 84.86 0.47 -3.74 16 9 N -0.97 -61.00 13.06 21.65 0.28 -60.72 16 10 Si 0.98 47.48 29.55 68.60 2.03 49.51 16 11 H -0.28 -13.29 7.11 99.48 0.71 -12.59 16 12 H -0.29 -13.91 7.11 99.48 0.71 -13.21 16 13 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 14 C 0.53 17.07 6.15 87.66 0.54 17.61 16 15 O -0.59 -25.52 16.03 -3.04 -0.05 -25.57 16 16 C -0.18 -3.73 4.25 -11.66 -0.05 -3.78 16 17 H 0.16 2.25 8.11 -2.38 -0.02 2.23 16 18 C -0.14 -2.86 9.74 30.48 0.30 -2.57 16 19 C -0.09 -1.70 2.21 -52.02 -0.11 -1.82 16 20 C -0.08 -0.90 6.58 31.57 0.21 -0.69 16 21 C -0.12 -1.38 6.91 31.93 0.22 -1.16 16 22 C -0.12 -2.09 6.84 31.72 0.22 -1.87 16 23 C -0.10 -2.43 6.18 31.22 0.19 -2.23 16 24 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 25 H 0.09 1.34 6.68 -2.39 -0.02 1.32 16 26 H 0.08 1.41 8.07 -2.39 -0.02 1.39 16 27 H 0.10 3.17 8.07 -2.38 -0.02 3.15 16 28 H 0.06 2.42 7.42 -2.39 -0.02 2.40 16 29 H -0.01 -0.29 8.14 -2.39 -0.02 -0.31 16 30 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.38 21.59 7.67 -92.70 -0.71 20.88 16 32 H 0.25 15.42 8.31 -92.70 -0.77 14.65 16 33 H 0.13 1.81 8.14 -2.39 -0.02 1.79 16 34 H 0.07 2.01 7.82 -2.39 -0.02 1.99 16 35 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 36 H 0.09 0.70 8.11 -2.39 -0.02 0.68 16 37 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 38 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 39 H 0.06 1.13 8.14 -2.38 -0.02 1.11 16 40 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 41 H 0.05 1.34 8.14 -2.38 -0.02 1.32 16 42 H 0.04 1.17 7.25 -2.38 -0.02 1.15 16 Total: -1.00 -76.77 341.90 3.35 -73.42 By element: Atomic # 1 Polarization: 25.71 SS G_CDS: 0.28 Total: 25.98 kcal Atomic # 6 Polarization: -4.67 SS G_CDS: 5.17 Total: 0.50 kcal Atomic # 7 Polarization: -119.77 SS G_CDS: -4.07 Total: -123.84 kcal Atomic # 8 Polarization: -25.52 SS G_CDS: -0.05 Total: -25.57 kcal Atomic # 14 Polarization: 47.48 SS G_CDS: 2.03 Total: 49.51 kcal Total: -76.77 3.35 -73.42 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713650320.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.124 kcal (2) G-P(sol) polarization free energy of solvation -76.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds