Wall clock time and date at job start Mon Mar 30 2020 00:45:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46501 * 109.47220 * 2 1 4 4 C 1.36935 * 119.99915 * 89.65695 * 3 2 1 5 5 H 1.07997 * 120.00461 * 34.00646 * 4 3 2 6 6 C 1.38818 * 119.99875 * 213.73100 * 4 3 2 7 7 N 1.31625 * 119.99681 * 23.19391 * 6 4 3 8 8 Si 1.86797 * 120.00064 * 203.20068 * 6 4 3 9 9 H 1.48497 * 109.47194 * 89.99516 * 8 6 4 10 10 H 1.48507 * 109.47098 * 209.99859 * 8 6 4 11 11 H 1.48500 * 109.47124 * 329.99336 * 8 6 4 12 12 C 1.46501 * 119.99774 * 269.65815 * 3 2 1 13 13 C 1.52999 * 109.46680 * 269.99950 * 12 3 2 14 14 N 1.46500 * 109.47160 * 180.02562 * 13 12 3 15 15 C 1.34770 * 120.00158 * 179.97438 * 14 13 12 16 16 O 1.21274 * 120.00326 * 0.02562 * 15 14 13 17 17 C 1.50709 * 120.00085 * 179.97438 * 15 14 13 18 18 C 1.52999 * 109.47087 * 180.02562 * 17 15 14 19 19 H 1.08995 * 110.34616 * 307.29011 * 18 17 15 20 20 C 1.51103 * 110.38902 * 69.69816 * 18 17 15 21 21 C 1.30523 * 111.10654 * 135.24367 * 20 18 17 22 22 C 1.51109 * 111.10085 * 0.02562 * 21 20 18 23 23 C 1.54631 * 104.72574 * 343.55950 * 22 21 20 24 24 H 1.08995 * 109.47408 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47133 * 300.00514 * 1 2 3 26 26 H 1.08999 * 109.47018 * 60.00118 * 1 2 3 27 27 H 1.08999 * 109.47133 * 239.99486 * 2 1 3 28 28 H 1.09005 * 109.46349 * 119.99815 * 2 1 3 29 29 H 0.96995 * 119.99295 * 179.97438 * 7 6 4 30 30 H 1.08996 * 109.47048 * 29.99601 * 12 3 2 31 31 H 1.08994 * 109.46962 * 150.00055 * 12 3 2 32 32 H 1.09009 * 109.47396 * 300.00205 * 13 12 3 33 33 H 1.09006 * 109.47558 * 60.00003 * 13 12 3 34 34 H 0.97001 * 119.99749 * 359.97438 * 14 13 12 35 35 H 1.08998 * 109.46665 * 300.00461 * 17 15 14 36 36 H 1.08994 * 109.46773 * 60.00148 * 17 15 14 37 37 H 1.07995 * 124.44492 * 315.22717 * 20 18 17 38 38 H 1.07998 * 124.44853 * 180.02562 * 21 20 18 39 39 H 1.09001 * 110.38185 * 224.74407 * 22 21 20 40 40 H 1.09005 * 110.48106 * 102.42424 * 22 21 20 41 41 H 1.08992 * 111.03679 * 266.60085 * 23 22 21 42 42 H 1.09004 * 111.06816 * 142.67754 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2400 2.0291 1.1859 5 1 2.5945 1.4780 2.0443 6 6 2.0143 3.3954 1.2831 7 7 1.1886 3.9871 0.4461 8 14 2.8826 4.3940 2.6014 9 1 4.1753 4.8966 2.0707 10 1 2.0285 5.5434 2.9948 11 1 3.1343 3.5359 3.7870 12 6 2.2697 2.0693 -1.2687 13 6 3.7172 1.8279 -1.7017 14 7 3.9688 2.5164 -2.9701 15 6 5.1849 2.4443 -3.5464 16 8 6.0710 1.8091 -3.0152 17 6 5.4436 3.1521 -4.8515 18 6 6.8911 2.9108 -5.2844 19 1 7.5764 3.1728 -4.4784 20 6 7.0844 1.4696 -5.6953 21 6 7.7685 1.3846 -6.8036 22 6 8.1461 2.7549 -7.3164 23 6 7.2174 3.7291 -6.5551 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 1.0307 4.9417 0.5143 30 1 1.5932 1.6836 -2.0314 31 1 2.1020 3.1387 -1.1415 32 1 4.3938 2.2135 -0.9389 33 1 3.8849 0.7583 -1.8289 34 1 3.2600 3.0241 -3.3952 35 1 4.7674 2.7661 -5.6143 36 1 5.2754 4.2214 -4.7244 37 1 6.7064 0.6213 -5.1441 38 1 8.0304 0.4567 -7.2902 39 1 7.9680 2.8210 -8.3897 40 1 9.1904 2.9719 -7.0915 41 1 6.3142 3.9373 -7.1286 42 1 7.7397 4.6520 -6.3030 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714575124.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:48 Heat of formation + Delta-G solvation = -14.224866 kcal Electronic energy + Delta-G solvation = -20179.331899 eV Core-core repulsion = 17159.730045 eV Total energy + Delta-G solvation = -3019.601854 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.74210 -38.16010 -36.25087 -34.01690 -31.83595 -31.64718 -29.61610 -28.99454 -27.54028 -25.35440 -23.85585 -22.16411 -20.62114 -20.18046 -19.86114 -18.66806 -17.01852 -16.37136 -15.80754 -15.75942 -15.12106 -14.86634 -14.65273 -13.95432 -13.73002 -13.24182 -13.17022 -12.44854 -12.32995 -12.16649 -11.97417 -11.90074 -11.88178 -11.34958 -11.20418 -11.15552 -11.09038 -10.87827 -10.79124 -10.65703 -10.33098 -10.05385 -9.92166 -9.78700 -9.38785 -8.92761 -8.57237 -8.43464 -6.68894 -5.83701 -3.37441 2.28214 3.04498 3.35837 3.43444 3.45476 3.64984 4.46741 4.54414 4.56159 4.81442 5.06645 5.20116 5.28363 5.35542 5.45363 5.48169 5.55735 5.59450 5.70156 5.78868 5.87380 6.07730 6.10095 6.15451 6.20434 6.22667 6.40893 6.52923 6.54884 6.56491 6.64774 6.88841 6.93435 6.95427 7.07091 7.23230 7.59977 7.79142 8.00057 8.45100 8.67009 9.13196 9.76941 10.32460 11.16740 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.023308 B = 0.004016 C = 0.003648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1201.020139 B = 6970.215411 C = 7673.406470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.141 3.859 3 N -0.581 5.581 4 C -0.257 4.257 5 H 0.064 0.936 6 C 0.009 3.991 7 N -0.888 5.888 8 Si 0.897 3.103 9 H -0.286 1.286 10 H -0.291 1.291 11 H -0.277 1.277 12 C 0.133 3.867 13 C 0.100 3.900 14 N -0.722 5.722 15 C 0.505 3.495 16 O -0.548 6.548 17 C -0.134 4.134 18 C -0.055 4.055 19 H 0.090 0.910 20 C -0.134 4.134 21 C -0.189 4.189 22 C -0.097 4.097 23 C -0.123 4.123 24 H 0.031 0.969 25 H 0.054 0.946 26 H 0.042 0.958 27 H 0.033 0.967 28 H 0.043 0.957 29 H 0.254 0.746 30 H 0.027 0.973 31 H 0.105 0.895 32 H 0.063 0.937 33 H 0.047 0.953 34 H 0.397 0.603 35 H 0.091 0.909 36 H 0.092 0.908 37 H 0.125 0.875 38 H 0.120 0.880 39 H 0.066 0.934 40 H 0.071 0.929 41 H 0.072 0.928 42 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.109 -0.926 -14.637 16.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.015 3.985 3 N -0.302 5.302 4 C -0.387 4.387 5 H 0.082 0.918 6 C -0.191 4.191 7 N -0.531 5.531 8 Si 0.726 3.274 9 H -0.213 1.213 10 H -0.218 1.218 11 H -0.202 1.202 12 C 0.006 3.994 13 C -0.026 4.026 14 N -0.373 5.373 15 C 0.290 3.710 16 O -0.426 6.426 17 C -0.174 4.174 18 C -0.073 4.073 19 H 0.108 0.892 20 C -0.152 4.152 21 C -0.207 4.207 22 C -0.135 4.135 23 C -0.160 4.160 24 H 0.050 0.950 25 H 0.074 0.926 26 H 0.061 0.939 27 H 0.052 0.948 28 H 0.062 0.938 29 H 0.064 0.936 30 H 0.045 0.955 31 H 0.123 0.877 32 H 0.081 0.919 33 H 0.065 0.935 34 H 0.230 0.770 35 H 0.109 0.891 36 H 0.111 0.889 37 H 0.143 0.857 38 H 0.138 0.862 39 H 0.085 0.915 40 H 0.089 0.911 41 H 0.091 0.909 42 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 7.659 -1.234 -14.206 16.187 hybrid contribution -0.011 0.759 0.514 0.917 sum 7.648 -0.475 -13.692 15.691 Atomic orbital electron populations 1.22266 0.99589 0.98417 1.01891 1.20902 0.92047 0.87235 0.98321 1.43724 1.74348 1.10110 1.02028 1.19125 1.37959 0.91223 0.90352 0.91816 1.25065 0.97316 0.98464 0.98228 1.69970 1.33454 1.10197 1.39461 0.86380 0.79477 0.79834 0.81692 1.21302 1.21754 1.20216 1.21101 0.89168 1.02614 0.86562 1.22293 1.01790 0.95370 0.83140 1.46150 1.12708 1.53273 1.25161 1.20626 0.82523 0.81312 0.86494 1.90671 1.44079 1.42723 1.65098 1.21723 0.98262 1.01716 0.95675 1.20820 0.95508 0.93221 0.97759 0.89163 1.23332 0.98260 0.97650 0.95984 1.23211 1.01305 0.97908 0.98256 1.21314 0.99566 0.92818 0.99753 1.22563 0.99687 0.97905 0.95874 0.95023 0.92636 0.93864 0.94830 0.93845 0.93580 0.95499 0.87736 0.91857 0.93478 0.77010 0.89067 0.88921 0.85748 0.86215 0.91549 0.91050 0.90925 0.90914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.20 10.24 37.16 0.38 -2.82 16 2 C 0.14 2.97 6.39 -4.04 -0.03 2.94 16 3 N -0.58 -14.17 2.45 -173.24 -0.42 -14.60 16 4 C -0.26 -6.92 9.49 -15.06 -0.14 -7.06 16 5 H 0.06 1.73 7.93 -52.49 -0.42 1.31 16 6 C 0.01 0.24 4.95 -17.43 -0.09 0.16 16 7 N -0.89 -24.61 11.31 55.49 0.63 -23.98 16 8 Si 0.90 21.47 29.61 -169.99 -5.03 16.43 16 9 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 10 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 11 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 12 C 0.13 2.97 5.41 -4.04 -0.02 2.94 16 13 C 0.10 2.04 6.00 -4.04 -0.02 2.02 16 14 N -0.72 -12.04 5.56 -60.29 -0.33 -12.37 16 15 C 0.50 8.26 7.63 -10.98 -0.08 8.18 16 16 O -0.55 -11.06 14.92 5.56 0.08 -10.98 16 17 C -0.13 -1.56 5.10 -27.88 -0.14 -1.70 16 18 C -0.05 -0.65 2.52 -90.72 -0.23 -0.87 16 19 H 0.09 1.23 7.90 -51.93 -0.41 0.82 16 20 C -0.13 -1.68 9.26 -35.70 -0.33 -2.01 16 21 C -0.19 -2.00 10.78 -35.69 -0.38 -2.39 16 22 C -0.10 -0.88 6.81 -26.83 -0.18 -1.06 16 23 C -0.12 -1.12 6.71 -25.02 -0.17 -1.28 16 24 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.05 1.21 8.14 -51.93 -0.42 0.78 16 26 H 0.04 0.87 8.14 -51.93 -0.42 0.44 16 27 H 0.03 0.64 8.07 -51.93 -0.42 0.23 16 28 H 0.04 0.90 8.04 -51.93 -0.42 0.48 16 29 H 0.25 6.82 8.31 -40.82 -0.34 6.48 16 30 H 0.03 0.56 8.07 -51.93 -0.42 0.14 16 31 H 0.11 2.62 5.30 -51.93 -0.28 2.34 16 32 H 0.06 1.49 8.14 -51.92 -0.42 1.07 16 33 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.40 5.56 8.47 -40.82 -0.35 5.21 16 35 H 0.09 0.91 8.13 -51.93 -0.42 0.49 16 36 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.12 1.76 7.58 -52.49 -0.40 1.36 16 38 H 0.12 1.11 8.06 -52.49 -0.42 0.68 16 39 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.07 0.59 7.91 -51.93 -0.41 0.18 16 42 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 343.50 15.07 5.18 5.18 Total: -1.00 -30.29 343.50 -8.64 -38.94 By element: Atomic # 1 Polarization: 11.65 SS G_CDS: -7.30 Total: 4.35 kcal Atomic # 6 Polarization: -1.52 SS G_CDS: -1.44 Total: -2.96 kcal Atomic # 7 Polarization: -50.83 SS G_CDS: -0.13 Total: -50.96 kcal Atomic # 8 Polarization: -11.06 SS G_CDS: 0.08 Total: -10.98 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.03 Total: 16.43 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -30.29 -8.64 -38.94 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714575124.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.713 kcal (2) G-P(sol) polarization free energy of solvation -30.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds