Wall clock time and date at job start Mon Mar 30 2020 00:45:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46501 * 109.47220 * 2 1 4 4 C 1.36935 * 119.99915 * 89.65695 * 3 2 1 5 5 H 1.07997 * 120.00461 * 34.00646 * 4 3 2 6 6 C 1.38818 * 119.99875 * 213.73100 * 4 3 2 7 7 N 1.31625 * 119.99681 * 23.19391 * 6 4 3 8 8 Si 1.86797 * 120.00064 * 203.20068 * 6 4 3 9 9 H 1.48497 * 109.47194 * 89.99516 * 8 6 4 10 10 H 1.48507 * 109.47098 * 209.99859 * 8 6 4 11 11 H 1.48500 * 109.47124 * 329.99336 * 8 6 4 12 12 C 1.46501 * 119.99774 * 269.65815 * 3 2 1 13 13 C 1.52999 * 109.46680 * 269.99950 * 12 3 2 14 14 N 1.46500 * 109.47160 * 180.02562 * 13 12 3 15 15 C 1.34770 * 120.00158 * 179.97438 * 14 13 12 16 16 O 1.21274 * 120.00326 * 0.02562 * 15 14 13 17 17 C 1.50709 * 120.00085 * 179.97438 * 15 14 13 18 18 C 1.52999 * 109.47087 * 180.02562 * 17 15 14 19 19 H 1.08995 * 110.34616 * 307.29011 * 18 17 15 20 20 C 1.51103 * 110.38902 * 69.69816 * 18 17 15 21 21 C 1.30523 * 111.10654 * 135.24367 * 20 18 17 22 22 C 1.51109 * 111.10085 * 0.02562 * 21 20 18 23 23 C 1.54631 * 104.72574 * 343.55950 * 22 21 20 24 24 H 1.08995 * 109.47408 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47133 * 300.00514 * 1 2 3 26 26 H 1.08999 * 109.47018 * 60.00118 * 1 2 3 27 27 H 1.08999 * 109.47133 * 239.99486 * 2 1 3 28 28 H 1.09005 * 109.46349 * 119.99815 * 2 1 3 29 29 H 0.96995 * 119.99295 * 179.97438 * 7 6 4 30 30 H 1.08996 * 109.47048 * 29.99601 * 12 3 2 31 31 H 1.08994 * 109.46962 * 150.00055 * 12 3 2 32 32 H 1.09009 * 109.47396 * 300.00205 * 13 12 3 33 33 H 1.09006 * 109.47558 * 60.00003 * 13 12 3 34 34 H 0.97001 * 119.99749 * 359.97438 * 14 13 12 35 35 H 1.08998 * 109.46665 * 300.00461 * 17 15 14 36 36 H 1.08994 * 109.46773 * 60.00148 * 17 15 14 37 37 H 1.07995 * 124.44492 * 315.22717 * 20 18 17 38 38 H 1.07998 * 124.44853 * 180.02562 * 21 20 18 39 39 H 1.09001 * 110.38185 * 224.74407 * 22 21 20 40 40 H 1.09005 * 110.48106 * 102.42424 * 22 21 20 41 41 H 1.08992 * 111.03679 * 266.60085 * 23 22 21 42 42 H 1.09004 * 111.06816 * 142.67754 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2400 2.0291 1.1859 5 1 2.5945 1.4780 2.0443 6 6 2.0143 3.3954 1.2831 7 7 1.1886 3.9871 0.4461 8 14 2.8826 4.3940 2.6014 9 1 4.1753 4.8966 2.0707 10 1 2.0285 5.5434 2.9948 11 1 3.1343 3.5359 3.7870 12 6 2.2697 2.0693 -1.2687 13 6 3.7172 1.8279 -1.7017 14 7 3.9688 2.5164 -2.9701 15 6 5.1849 2.4443 -3.5464 16 8 6.0710 1.8091 -3.0152 17 6 5.4436 3.1521 -4.8515 18 6 6.8911 2.9108 -5.2844 19 1 7.5764 3.1728 -4.4784 20 6 7.0844 1.4696 -5.6953 21 6 7.7685 1.3846 -6.8036 22 6 8.1461 2.7549 -7.3164 23 6 7.2174 3.7291 -6.5551 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 1.0307 4.9417 0.5143 30 1 1.5932 1.6836 -2.0314 31 1 2.1020 3.1387 -1.1415 32 1 4.3938 2.2135 -0.9389 33 1 3.8849 0.7583 -1.8289 34 1 3.2600 3.0241 -3.3952 35 1 4.7674 2.7661 -5.6143 36 1 5.2754 4.2214 -4.7244 37 1 6.7064 0.6213 -5.1441 38 1 8.0304 0.4567 -7.2902 39 1 7.9680 2.8210 -8.3897 40 1 9.1904 2.9719 -7.0915 41 1 6.3142 3.9373 -7.1286 42 1 7.7397 4.6520 -6.3030 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714575124.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:47 Heat of formation + Delta-G solvation = -31.887592 kcal Electronic energy + Delta-G solvation = -20180.097813 eV Core-core repulsion = 17159.730045 eV Total energy + Delta-G solvation = -3020.367767 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.95078 -39.20705 -38.03540 -35.57855 -33.79606 -32.70447 -31.23442 -29.79476 -29.24637 -26.60590 -25.56822 -23.78988 -21.84640 -21.58814 -21.17742 -19.61662 -18.73329 -17.75915 -17.07501 -16.97461 -16.72086 -16.33275 -15.97649 -15.61593 -15.32079 -14.70725 -14.56952 -14.12459 -13.92006 -13.57254 -13.09633 -12.94335 -12.88206 -12.75279 -12.65813 -12.63328 -12.44393 -12.22720 -12.06862 -12.00812 -11.94681 -11.74074 -11.66795 -11.53334 -10.78501 -10.57474 -9.99236 -9.77968 -8.66327 -7.86905 -5.43782 1.39825 1.43244 1.47561 1.53906 1.73504 2.28805 2.51833 3.21436 3.62465 3.74973 3.79269 4.00350 4.06047 4.33868 4.38571 4.43904 4.44319 4.58966 4.59452 4.68924 4.76978 4.77997 4.82017 4.87826 4.99777 5.01379 5.04288 5.12094 5.24365 5.28405 5.31480 5.43065 5.47770 5.57163 5.65392 5.70178 5.80080 6.00555 6.42816 6.68346 7.12833 7.36090 7.82628 8.32507 9.10084 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.023308 B = 0.004016 C = 0.003648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1201.020139 B = 6970.215411 C = 7673.406470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.135 3.865 3 N -0.599 5.599 4 C -0.270 4.270 5 H 0.055 0.945 6 C -0.031 4.031 7 N -0.909 5.909 8 Si 0.950 3.050 9 H -0.291 1.291 10 H -0.289 1.289 11 H -0.272 1.272 12 C 0.141 3.859 13 C 0.121 3.879 14 N -0.717 5.717 15 C 0.500 3.500 16 O -0.591 6.591 17 C -0.122 4.122 18 C -0.057 4.057 19 H 0.064 0.936 20 C -0.169 4.169 21 C -0.171 4.171 22 C -0.099 4.099 23 C -0.115 4.115 24 H 0.067 0.933 25 H 0.028 0.972 26 H 0.036 0.964 27 H 0.053 0.947 28 H 0.043 0.957 29 H 0.253 0.747 30 H 0.042 0.958 31 H 0.082 0.918 32 H 0.026 0.974 33 H 0.041 0.959 34 H 0.412 0.588 35 H 0.116 0.884 36 H 0.118 0.882 37 H 0.097 0.903 38 H 0.132 0.868 39 H 0.087 0.913 40 H 0.077 0.923 41 H 0.089 0.911 42 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.282 -0.471 -16.681 18.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.010 3.990 3 N -0.320 5.320 4 C -0.400 4.400 5 H 0.072 0.928 6 C -0.228 4.228 7 N -0.553 5.553 8 Si 0.778 3.222 9 H -0.218 1.218 10 H -0.215 1.215 11 H -0.197 1.197 12 C 0.014 3.986 13 C -0.006 4.006 14 N -0.369 5.369 15 C 0.289 3.711 16 O -0.471 6.471 17 C -0.162 4.162 18 C -0.075 4.075 19 H 0.082 0.918 20 C -0.188 4.188 21 C -0.189 4.189 22 C -0.136 4.136 23 C -0.152 4.152 24 H 0.086 0.914 25 H 0.047 0.953 26 H 0.056 0.944 27 H 0.072 0.928 28 H 0.061 0.939 29 H 0.063 0.937 30 H 0.061 0.939 31 H 0.099 0.901 32 H 0.044 0.956 33 H 0.059 0.941 34 H 0.248 0.752 35 H 0.135 0.865 36 H 0.136 0.864 37 H 0.116 0.884 38 H 0.149 0.851 39 H 0.106 0.894 40 H 0.096 0.904 41 H 0.108 0.892 42 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 7.815 -0.780 -16.274 18.070 hybrid contribution -0.026 0.520 1.114 1.230 sum 7.789 -0.259 -15.160 17.046 Atomic orbital electron populations 1.22108 0.98362 1.00236 1.00194 1.21055 0.92974 0.85706 0.99289 1.43964 1.74937 1.11229 1.01906 1.19276 1.37807 0.91787 0.91122 0.92771 1.25616 0.97938 0.99135 1.00142 1.70059 1.34316 1.10168 1.40711 0.85546 0.78145 0.78580 0.79896 1.21804 1.21500 1.19733 1.20962 0.90213 1.01078 0.86335 1.21755 0.99760 0.95050 0.84020 1.46027 1.13723 1.53215 1.23906 1.21544 0.81409 0.80558 0.87618 1.90654 1.45329 1.44595 1.66561 1.21770 0.98891 1.02466 0.93032 1.20826 0.94876 0.93390 0.98436 0.91821 1.23240 1.00847 0.97460 0.97212 1.23526 0.98842 0.99505 0.97019 1.21394 0.99879 0.91396 1.00905 1.22571 1.00596 0.97821 0.94235 0.91403 0.95301 0.94449 0.92817 0.93886 0.93734 0.93935 0.90069 0.95558 0.94092 0.75201 0.86540 0.86437 0.88445 0.85062 0.89438 0.90423 0.89199 0.89728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.72 10.24 71.98 0.74 -4.99 16 2 C 0.13 5.58 6.39 86.38 0.55 6.13 16 3 N -0.60 -29.40 2.45 -701.99 -1.72 -31.13 16 4 C -0.27 -14.73 9.49 84.04 0.80 -13.93 16 5 H 0.05 3.00 7.93 -2.91 -0.02 2.98 16 6 C -0.03 -1.67 4.95 84.86 0.42 -1.25 16 7 N -0.91 -50.80 11.31 21.65 0.24 -50.56 16 8 Si 0.95 44.60 29.61 68.60 2.03 46.63 16 9 H -0.29 -13.79 7.11 99.48 0.71 -13.09 16 10 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 11 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 12 C 0.14 6.33 5.41 86.38 0.47 6.79 16 13 C 0.12 5.05 6.00 86.38 0.52 5.57 16 14 N -0.72 -23.68 5.56 -463.05 -2.57 -26.25 16 15 C 0.50 16.32 7.63 87.66 0.67 16.99 16 16 O -0.59 -24.63 14.92 -3.01 -0.04 -24.68 16 17 C -0.12 -2.62 5.10 29.85 0.15 -2.47 16 18 C -0.06 -1.28 2.52 -10.86 -0.03 -1.30 16 19 H 0.06 1.75 7.90 -2.39 -0.02 1.73 16 20 C -0.17 -4.19 9.26 26.27 0.24 -3.95 16 21 C -0.17 -3.33 10.78 26.27 0.28 -3.05 16 22 C -0.10 -1.48 6.81 30.53 0.21 -1.27 16 23 C -0.11 -1.73 6.71 31.70 0.21 -1.52 16 24 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 25 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 26 H 0.04 1.44 8.14 -2.39 -0.02 1.43 16 27 H 0.05 1.99 8.07 -2.39 -0.02 1.97 16 28 H 0.04 1.76 8.04 -2.38 -0.02 1.74 16 29 H 0.25 13.68 8.31 -92.71 -0.77 12.91 16 30 H 0.04 1.74 8.07 -2.39 -0.02 1.73 16 31 H 0.08 4.11 5.30 -2.39 -0.01 4.10 16 32 H 0.03 1.28 8.14 -2.38 -0.02 1.26 16 33 H 0.04 1.75 8.14 -2.38 -0.02 1.73 16 34 H 0.41 11.05 8.47 -92.71 -0.79 10.27 16 35 H 0.12 1.97 8.13 -2.39 -0.02 1.95 16 36 H 0.12 1.98 8.14 -2.39 -0.02 1.96 16 37 H 0.10 2.89 7.58 -2.91 -0.02 2.87 16 38 H 0.13 2.17 8.06 -2.91 -0.02 2.15 16 39 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 40 H 0.08 1.10 8.14 -2.38 -0.02 1.09 16 41 H 0.09 1.08 7.91 -2.39 -0.02 1.06 16 42 H 0.08 1.10 8.14 -2.38 -0.02 1.08 16 Total: -1.00 -66.89 343.50 3.36 -63.53 By element: Atomic # 1 Polarization: 20.50 SS G_CDS: 0.19 Total: 20.70 kcal Atomic # 6 Polarization: -3.47 SS G_CDS: 5.23 Total: 1.76 kcal Atomic # 7 Polarization: -103.89 SS G_CDS: -4.05 Total: -107.94 kcal Atomic # 8 Polarization: -24.63 SS G_CDS: -0.04 Total: -24.68 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 2.03 Total: 46.63 kcal Total: -66.89 3.36 -63.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714575124.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.639 kcal (2) G-P(sol) polarization free energy of solvation -66.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds