Wall clock time and date at job start Mon Mar 30 2020 00:46:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46496 * 109.47679 * 2 1 4 4 C 1.36938 * 119.99739 * 263.78937 * 3 2 1 5 5 H 1.08000 * 120.00108 * 142.61389 * 4 3 2 6 6 C 1.38807 * 120.00287 * 322.60944 * 4 3 2 7 7 N 1.31620 * 120.00332 * 157.39039 * 6 4 3 8 8 Si 1.86805 * 119.99948 * 337.39311 * 6 4 3 9 9 H 1.48504 * 109.47110 * 95.71037 * 8 6 4 10 10 H 1.48500 * 109.47420 * 215.71305 * 8 6 4 11 11 H 1.48498 * 109.46952 * 335.71340 * 8 6 4 12 12 C 1.46497 * 120.00390 * 83.78205 * 3 2 1 13 13 C 1.53006 * 109.46993 * 90.00319 * 12 3 2 14 14 N 1.46493 * 109.47389 * 180.02562 * 13 12 3 15 15 C 1.34776 * 120.00386 * 179.72627 * 14 13 12 16 16 O 1.21284 * 119.99645 * 0.27043 * 15 14 13 17 17 C 1.50694 * 120.00463 * 180.27582 * 15 14 13 18 18 H 1.09000 * 110.67383 * 56.75605 * 17 15 14 19 19 C 1.54892 * 110.75846 * 180.02562 * 17 15 14 20 20 C 1.54267 * 104.19507 * 156.25549 * 19 17 15 21 21 H 1.09001 * 117.41065 * 116.36601 * 20 19 17 22 22 C 1.52998 * 118.19726 * 270.99337 * 20 19 17 23 23 C 1.53869 * 106.60185 * 336.38500 * 20 19 17 24 24 H 1.08998 * 121.33087 * 138.63053 * 23 20 19 25 25 C 1.54267 * 106.59806 * 0.02562 * 23 20 19 26 26 H 1.08994 * 109.47659 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.46811 * 300.00745 * 1 2 3 28 28 H 1.09002 * 109.47210 * 59.99691 * 1 2 3 29 29 H 1.09002 * 109.46811 * 239.99255 * 2 1 3 30 30 H 1.09000 * 109.46820 * 119.99943 * 2 1 3 31 31 H 0.96999 * 119.99907 * 180.02562 * 7 6 4 32 32 H 1.09004 * 109.47274 * 330.00947 * 12 3 2 33 33 H 1.08995 * 109.47820 * 210.00308 * 12 3 2 34 34 H 1.08997 * 109.46871 * 59.99989 * 13 12 3 35 35 H 1.09004 * 109.46808 * 300.00281 * 13 12 3 36 36 H 0.97003 * 119.99850 * 359.97438 * 14 13 12 37 37 H 1.09003 * 110.47744 * 274.93194 * 19 17 15 38 38 H 1.08988 * 110.48795 * 37.57365 * 19 17 15 39 39 H 1.09006 * 117.45794 * 201.21673 * 22 20 19 40 40 H 1.08993 * 117.46205 * 346.04373 * 22 20 19 41 41 H 1.08998 * 110.48330 * 264.93112 * 25 23 20 42 42 H 1.08997 * 110.48736 * 142.28747 * 25 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.3677 1.9838 -1.1790 5 1 2.1498 3.0299 -1.3360 6 6 3.0017 1.2503 -2.1723 7 7 2.9451 1.6517 -3.4245 8 14 3.9354 -0.3066 -1.7318 9 1 3.0562 -1.4857 -1.9368 10 1 5.1348 -0.4267 -2.5991 11 1 4.3573 -0.2450 -0.3094 12 6 2.1331 2.1176 1.2612 13 6 3.5251 1.8959 1.8564 14 7 3.6397 2.6318 3.1179 15 6 4.7845 2.5792 3.8273 16 8 5.7215 1.9265 3.4187 17 6 4.9002 3.3312 5.1280 18 1 4.1144 3.0272 5.8195 19 6 6.2990 3.1230 5.7599 20 6 6.4903 4.3543 6.6694 21 1 6.5773 4.1776 7.7414 22 6 7.1219 5.6093 6.0637 23 6 5.5754 5.4588 6.1122 24 1 4.9953 6.1018 6.7741 25 6 4.8594 4.8601 4.8839 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5140 0.8899 28 1 -0.3634 0.5139 -0.8900 29 1 1.8933 -0.5140 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 3.3879 1.1388 -4.1187 32 1 1.3777 1.7599 1.9609 33 1 1.9824 3.1811 1.0760 34 1 4.2806 2.2535 1.1568 35 1 3.6758 0.8323 2.0416 36 1 2.8904 3.1541 3.4445 37 1 6.3185 2.2065 6.3495 38 1 7.0668 3.0968 4.9868 39 1 7.5743 6.3255 6.7497 40 1 7.6167 5.5070 5.0979 41 1 5.3947 5.1141 3.9690 42 1 3.8288 5.2114 4.8342 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714590494.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:46:06 Heat of formation + Delta-G solvation = 2.175065 kcal Electronic energy + Delta-G solvation = -20399.185373 eV Core-core repulsion = 17380.294674 eV Total energy + Delta-G solvation = -3018.890700 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.28621 -38.40688 -36.57451 -34.34388 -32.12460 -31.73332 -30.18266 -28.44368 -27.70718 -24.54000 -23.36099 -22.57399 -21.12158 -20.36860 -19.87497 -19.52798 -16.99361 -16.64687 -16.55887 -15.64457 -15.31962 -15.02166 -14.32954 -13.96255 -13.69973 -13.34996 -13.19123 -13.15519 -12.89419 -12.62526 -12.06289 -11.76685 -11.71158 -11.48837 -11.42350 -11.27574 -11.21160 -11.20421 -10.89388 -10.45372 -10.26538 -10.22207 -9.94713 -9.76802 -9.57908 -9.44801 -8.69320 -8.55221 -6.93036 -6.02934 -3.45571 2.81942 3.30405 3.33304 3.46006 3.49418 3.56079 4.28612 4.42474 4.51337 4.59452 4.88497 4.97201 4.99414 5.10880 5.18125 5.29818 5.31859 5.38025 5.54294 5.58728 5.72313 5.74414 5.81517 5.90874 5.91260 5.97730 6.02733 6.14541 6.20508 6.22721 6.30371 6.46654 6.60501 6.65938 6.77361 6.87675 7.03071 7.76885 8.01669 8.33216 8.47950 8.93486 9.66938 10.05755 11.12298 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.028105 B = 0.004088 C = 0.003951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.025600 B = 6847.072646 C = 7084.852231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.129 3.871 3 N -0.599 5.599 4 C -0.273 4.273 5 H 0.080 0.920 6 C 0.040 3.960 7 N -0.897 5.897 8 Si 0.874 3.126 9 H -0.286 1.286 10 H -0.300 1.300 11 H -0.265 1.265 12 C 0.143 3.857 13 C 0.092 3.908 14 N -0.723 5.723 15 C 0.513 3.487 16 O -0.543 6.543 17 C -0.113 4.113 18 H 0.101 0.899 19 C -0.078 4.078 20 C -0.163 4.163 21 H 0.109 0.891 22 C -0.156 4.156 23 C -0.168 4.168 24 H 0.112 0.888 25 C -0.084 4.084 26 H 0.039 0.961 27 H 0.042 0.958 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.034 0.966 31 H 0.264 0.736 32 H 0.044 0.956 33 H 0.057 0.943 34 H 0.071 0.929 35 H 0.056 0.944 36 H 0.396 0.604 37 H 0.072 0.928 38 H 0.082 0.918 39 H 0.097 0.903 40 H 0.094 0.906 41 H 0.074 0.926 42 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.380 5.284 20.091 20.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.004 3.996 3 N -0.322 5.322 4 C -0.402 4.402 5 H 0.098 0.902 6 C -0.161 4.161 7 N -0.538 5.538 8 Si 0.703 3.297 9 H -0.214 1.214 10 H -0.228 1.228 11 H -0.190 1.190 12 C 0.015 3.985 13 C -0.034 4.034 14 N -0.374 5.374 15 C 0.298 3.702 16 O -0.420 6.420 17 C -0.135 4.135 18 H 0.119 0.881 19 C -0.116 4.116 20 C -0.181 4.181 21 H 0.127 0.873 22 C -0.192 4.192 23 C -0.186 4.186 24 H 0.130 0.870 25 C -0.122 4.122 26 H 0.058 0.942 27 H 0.061 0.939 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.052 0.948 31 H 0.074 0.926 32 H 0.062 0.938 33 H 0.076 0.924 34 H 0.089 0.911 35 H 0.074 0.926 36 H 0.229 0.771 37 H 0.091 0.909 38 H 0.101 0.899 39 H 0.115 0.885 40 H 0.113 0.887 41 H 0.093 0.907 42 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 2.081 4.767 19.561 20.241 hybrid contribution 0.230 -0.705 0.305 0.802 sum 2.311 4.062 19.866 20.409 Atomic orbital electron populations 1.22226 0.98813 0.99509 1.01624 1.21158 0.92709 0.86433 0.99273 1.44089 1.74273 1.11470 1.02340 1.18776 1.33997 0.97273 0.90127 0.90233 1.25466 0.97365 0.98040 0.95268 1.69865 1.43860 1.40691 0.99372 0.86986 0.79948 0.83689 0.79037 1.21381 1.22789 1.18993 1.21052 0.92003 0.97263 0.88133 1.22415 1.01981 0.95705 0.83257 1.46142 1.15534 1.51440 1.24323 1.20466 0.82686 0.81380 0.85624 1.90705 1.38205 1.42351 1.70721 1.22494 1.00160 0.95807 0.95001 0.88117 1.21799 0.95556 0.96274 0.97968 1.23269 1.05292 0.90216 0.99345 0.87333 1.23461 0.93993 0.99133 1.02656 1.23585 0.91852 1.02987 1.00136 0.86955 1.21879 1.00956 0.91929 0.97427 0.94179 0.93870 0.92176 0.92348 0.94755 0.92614 0.93750 0.92427 0.91074 0.92588 0.77079 0.90916 0.89919 0.88452 0.88723 0.90705 0.90385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.99 10.23 37.16 0.38 -2.61 16 2 C 0.13 2.78 5.01 -4.05 -0.02 2.76 16 3 N -0.60 -13.82 2.08 -173.24 -0.36 -14.18 16 4 C -0.27 -7.49 9.91 -15.06 -0.15 -7.64 16 5 H 0.08 2.34 8.06 -52.49 -0.42 1.92 16 6 C 0.04 1.14 5.26 -17.43 -0.09 1.05 16 7 N -0.90 -27.29 13.97 55.49 0.78 -26.51 16 8 Si 0.87 22.54 25.05 -169.99 -4.26 18.28 16 9 H -0.29 -7.12 6.69 56.52 0.38 -6.75 16 10 H -0.30 -7.91 7.11 56.52 0.40 -7.51 16 11 H -0.27 -6.83 7.11 56.52 0.40 -6.43 16 12 C 0.14 2.65 5.80 -4.04 -0.02 2.62 16 13 C 0.09 1.72 6.00 -4.04 -0.02 1.70 16 14 N -0.72 -10.48 5.56 -60.30 -0.33 -10.81 16 15 C 0.51 7.86 7.13 -10.99 -0.08 7.78 16 16 O -0.54 -10.89 15.73 5.55 0.09 -10.80 16 17 C -0.11 -1.23 3.29 -89.79 -0.30 -1.53 16 18 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 19 C -0.08 -0.87 5.70 -25.07 -0.14 -1.01 16 20 C -0.16 -1.46 6.85 -89.51 -0.61 -2.07 16 21 H 0.11 0.83 8.14 -51.93 -0.42 0.41 16 22 C -0.16 -1.34 10.21 -25.42 -0.26 -1.60 16 23 C -0.17 -1.43 7.04 -88.20 -0.62 -2.05 16 24 H 0.11 0.80 8.14 -51.93 -0.42 0.38 16 25 C -0.08 -0.80 6.08 -25.08 -0.15 -0.95 16 26 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.04 0.71 8.12 -51.93 -0.42 0.29 16 28 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 29 H 0.06 1.39 3.60 -51.93 -0.19 1.20 16 30 H 0.03 0.67 8.12 -51.93 -0.42 0.25 16 31 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 32 H 0.04 0.71 8.05 -51.93 -0.42 0.29 16 33 H 0.06 1.04 8.04 -51.93 -0.42 0.62 16 34 H 0.07 1.58 8.14 -51.93 -0.42 1.15 16 35 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 36 H 0.40 4.31 8.47 -40.82 -0.35 3.97 16 37 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.08 1.10 7.43 -51.94 -0.39 0.72 16 39 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.07 0.83 8.04 -51.93 -0.42 0.42 16 42 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 LS Contribution 337.59 15.07 5.09 5.09 Total: -1.00 -32.45 337.59 -8.34 -40.79 By element: Atomic # 1 Polarization: 8.94 SS G_CDS: -7.25 Total: 1.69 kcal Atomic # 6 Polarization: -1.46 SS G_CDS: -2.09 Total: -3.55 kcal Atomic # 7 Polarization: -51.58 SS G_CDS: 0.08 Total: -51.50 kcal Atomic # 8 Polarization: -10.89 SS G_CDS: 0.09 Total: -10.80 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -4.26 Total: 18.28 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -32.45 -8.34 -40.79 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714590494.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.968 kcal (2) G-P(sol) polarization free energy of solvation -32.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.793 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds