Wall clock time and date at job start Mon Mar 30 2020 00:46:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46496 * 109.47679 * 2 1 4 4 C 1.36938 * 119.99739 * 263.78937 * 3 2 1 5 5 H 1.08000 * 120.00108 * 142.61389 * 4 3 2 6 6 C 1.38807 * 120.00287 * 322.60944 * 4 3 2 7 7 N 1.31620 * 120.00332 * 157.39039 * 6 4 3 8 8 Si 1.86805 * 119.99948 * 337.39311 * 6 4 3 9 9 H 1.48504 * 109.47110 * 95.71037 * 8 6 4 10 10 H 1.48500 * 109.47420 * 215.71305 * 8 6 4 11 11 H 1.48498 * 109.46952 * 335.71340 * 8 6 4 12 12 C 1.46497 * 120.00390 * 83.78205 * 3 2 1 13 13 C 1.53006 * 109.46993 * 90.00319 * 12 3 2 14 14 N 1.46493 * 109.47389 * 180.02562 * 13 12 3 15 15 C 1.34776 * 120.00386 * 179.72627 * 14 13 12 16 16 O 1.21284 * 119.99645 * 0.27043 * 15 14 13 17 17 C 1.50694 * 120.00463 * 180.27582 * 15 14 13 18 18 H 1.09000 * 110.67383 * 56.75605 * 17 15 14 19 19 C 1.54892 * 110.75846 * 180.02562 * 17 15 14 20 20 C 1.54267 * 104.19507 * 156.25549 * 19 17 15 21 21 H 1.09001 * 117.41065 * 116.36601 * 20 19 17 22 22 C 1.52998 * 118.19726 * 270.99337 * 20 19 17 23 23 C 1.53869 * 106.60185 * 336.38500 * 20 19 17 24 24 H 1.08998 * 121.33087 * 138.63053 * 23 20 19 25 25 C 1.54267 * 106.59806 * 0.02562 * 23 20 19 26 26 H 1.08994 * 109.47659 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.46811 * 300.00745 * 1 2 3 28 28 H 1.09002 * 109.47210 * 59.99691 * 1 2 3 29 29 H 1.09002 * 109.46811 * 239.99255 * 2 1 3 30 30 H 1.09000 * 109.46820 * 119.99943 * 2 1 3 31 31 H 0.96999 * 119.99907 * 180.02562 * 7 6 4 32 32 H 1.09004 * 109.47274 * 330.00947 * 12 3 2 33 33 H 1.08995 * 109.47820 * 210.00308 * 12 3 2 34 34 H 1.08997 * 109.46871 * 59.99989 * 13 12 3 35 35 H 1.09004 * 109.46808 * 300.00281 * 13 12 3 36 36 H 0.97003 * 119.99850 * 359.97438 * 14 13 12 37 37 H 1.09003 * 110.47744 * 274.93194 * 19 17 15 38 38 H 1.08988 * 110.48795 * 37.57365 * 19 17 15 39 39 H 1.09006 * 117.45794 * 201.21673 * 22 20 19 40 40 H 1.08993 * 117.46205 * 346.04373 * 22 20 19 41 41 H 1.08998 * 110.48330 * 264.93112 * 25 23 20 42 42 H 1.08997 * 110.48736 * 142.28747 * 25 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.3677 1.9838 -1.1790 5 1 2.1498 3.0299 -1.3360 6 6 3.0017 1.2503 -2.1723 7 7 2.9451 1.6517 -3.4245 8 14 3.9354 -0.3066 -1.7318 9 1 3.0562 -1.4857 -1.9368 10 1 5.1348 -0.4267 -2.5991 11 1 4.3573 -0.2450 -0.3094 12 6 2.1331 2.1176 1.2612 13 6 3.5251 1.8959 1.8564 14 7 3.6397 2.6318 3.1179 15 6 4.7845 2.5792 3.8273 16 8 5.7215 1.9265 3.4187 17 6 4.9002 3.3312 5.1280 18 1 4.1144 3.0272 5.8195 19 6 6.2990 3.1230 5.7599 20 6 6.4903 4.3543 6.6694 21 1 6.5773 4.1776 7.7414 22 6 7.1219 5.6093 6.0637 23 6 5.5754 5.4588 6.1122 24 1 4.9953 6.1018 6.7741 25 6 4.8594 4.8601 4.8839 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5140 0.8899 28 1 -0.3634 0.5139 -0.8900 29 1 1.8933 -0.5140 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 3.3879 1.1388 -4.1187 32 1 1.3777 1.7599 1.9609 33 1 1.9824 3.1811 1.0760 34 1 4.2806 2.2535 1.1568 35 1 3.6758 0.8323 2.0416 36 1 2.8904 3.1541 3.4445 37 1 6.3185 2.2065 6.3495 38 1 7.0668 3.0968 4.9868 39 1 7.5743 6.3255 6.7497 40 1 7.6167 5.5070 5.0979 41 1 5.3947 5.1141 3.9690 42 1 3.8288 5.2114 4.8342 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714590494.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:46:06 Heat of formation + Delta-G solvation = -19.076089 kcal Electronic energy + Delta-G solvation = -20400.106893 eV Core-core repulsion = 17380.294674 eV Total energy + Delta-G solvation = -3019.812219 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.33201 -39.45250 -38.29305 -35.83581 -33.90270 -33.00352 -31.66403 -29.54336 -29.09443 -26.08907 -24.86184 -23.95314 -22.05345 -21.95665 -20.81888 -20.52192 -18.76755 -18.04399 -17.33511 -17.27455 -17.00377 -16.34682 -15.84471 -15.40866 -15.19051 -14.78697 -14.62766 -14.21266 -14.02477 -13.93196 -13.75423 -13.52384 -13.09345 -12.81774 -12.67733 -12.59671 -12.36262 -12.27078 -12.13562 -12.00194 -11.92026 -11.72626 -11.42500 -10.97752 -10.83826 -10.67955 -10.53249 -10.09491 -8.86505 -8.24848 -5.62035 1.23691 1.38022 1.47130 1.60724 2.15656 2.36775 2.67056 3.02324 3.34217 3.54532 3.69933 3.82752 4.09474 4.17149 4.18899 4.25708 4.29093 4.30632 4.44676 4.51303 4.61440 4.64707 4.67072 4.72948 4.74496 4.92298 4.95106 5.01691 5.07596 5.12992 5.14235 5.19189 5.20359 5.34871 5.42390 5.48242 5.50524 5.91775 6.14564 6.59654 6.95099 7.28908 7.59097 7.99845 8.94937 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.028105 B = 0.004088 C = 0.003951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.025600 B = 6847.072646 C = 7084.852231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.120 3.880 3 N -0.613 5.613 4 C -0.255 4.255 5 H 0.050 0.950 6 C -0.013 4.013 7 N -0.945 5.945 8 Si 0.930 3.070 9 H -0.270 1.270 10 H -0.312 1.312 11 H -0.268 1.268 12 C 0.147 3.853 13 C 0.108 3.892 14 N -0.708 5.708 15 C 0.509 3.491 16 O -0.597 6.597 17 C -0.102 4.102 18 H 0.135 0.865 19 C -0.084 4.084 20 C -0.162 4.162 21 H 0.129 0.871 22 C -0.164 4.164 23 C -0.158 4.158 24 H 0.138 0.862 25 C -0.085 4.085 26 H 0.066 0.934 27 H 0.066 0.934 28 H 0.034 0.966 29 H 0.032 0.968 30 H 0.057 0.943 31 H 0.263 0.737 32 H 0.085 0.915 33 H 0.062 0.938 34 H 0.027 0.973 35 H 0.039 0.961 36 H 0.418 0.582 37 H 0.075 0.925 38 H 0.049 0.951 39 H 0.117 0.883 40 H 0.076 0.924 41 H 0.050 0.950 42 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.200 5.466 23.626 24.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.005 4.005 3 N -0.336 5.336 4 C -0.385 4.385 5 H 0.068 0.932 6 C -0.210 4.210 7 N -0.589 5.589 8 Si 0.760 3.240 9 H -0.197 1.197 10 H -0.241 1.241 11 H -0.192 1.192 12 C 0.020 3.980 13 C -0.019 4.019 14 N -0.360 5.360 15 C 0.297 3.703 16 O -0.478 6.478 17 C -0.123 4.123 18 H 0.152 0.848 19 C -0.122 4.122 20 C -0.180 4.180 21 H 0.147 0.853 22 C -0.201 4.201 23 C -0.176 4.176 24 H 0.156 0.844 25 C -0.123 4.123 26 H 0.085 0.915 27 H 0.085 0.915 28 H 0.053 0.947 29 H 0.050 0.950 30 H 0.075 0.925 31 H 0.072 0.928 32 H 0.103 0.897 33 H 0.081 0.919 34 H 0.046 0.954 35 H 0.058 0.942 36 H 0.255 0.745 37 H 0.094 0.906 38 H 0.067 0.933 39 H 0.135 0.865 40 H 0.094 0.906 41 H 0.069 0.931 42 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 0.453 4.961 23.156 23.686 hybrid contribution 0.705 -0.699 -0.737 1.237 sum 1.158 4.261 22.419 22.850 Atomic orbital electron populations 1.22090 0.96143 1.01309 1.01526 1.21294 0.94875 0.85235 0.99065 1.44229 1.74557 1.12293 1.02524 1.18712 1.32030 0.96091 0.91638 0.93218 1.25975 0.98762 1.01031 0.95193 1.69968 1.45945 1.42623 1.00338 0.86067 0.78417 0.81517 0.78029 1.19686 1.24095 1.19221 1.21153 0.92642 0.97231 0.86925 1.21923 1.00773 0.94937 0.84274 1.45887 1.16420 1.51009 1.22711 1.21333 0.81686 0.80599 0.86721 1.90686 1.40043 1.44764 1.72267 1.22537 1.01031 0.96091 0.92641 0.84752 1.21801 0.94875 0.97887 0.97642 1.23246 1.05872 0.89091 0.99772 0.85342 1.23542 0.94580 0.99648 1.02342 1.23673 0.91636 1.02713 0.99542 0.84442 1.21922 1.02458 0.90825 0.97074 0.91482 0.91506 0.94663 0.94983 0.92455 0.92820 0.89663 0.91944 0.95409 0.94242 0.74462 0.90580 0.93251 0.86466 0.90567 0.93114 0.87738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.12 10.23 71.98 0.74 -4.38 16 2 C 0.12 4.89 5.01 86.38 0.43 5.32 16 3 N -0.61 -27.64 2.08 -702.02 -1.46 -29.10 16 4 C -0.25 -14.20 9.91 84.03 0.83 -13.37 16 5 H 0.05 3.03 8.06 -2.91 -0.02 3.01 16 6 C -0.01 -0.74 5.26 84.86 0.45 -0.30 16 7 N -0.94 -59.36 13.97 21.65 0.30 -59.06 16 8 Si 0.93 47.76 25.05 68.60 1.72 49.48 16 9 H -0.27 -13.01 6.69 99.48 0.67 -12.35 16 10 H -0.31 -16.47 7.11 99.48 0.71 -15.76 16 11 H -0.27 -13.64 7.11 99.48 0.71 -12.93 16 12 C 0.15 5.12 5.80 86.38 0.50 5.63 16 13 C 0.11 3.98 6.00 86.38 0.52 4.50 16 14 N -0.71 -19.28 5.56 -463.07 -2.57 -21.85 16 15 C 0.51 15.20 7.13 87.66 0.63 15.82 16 16 O -0.60 -24.58 15.73 -3.04 -0.05 -24.63 16 17 C -0.10 -2.00 3.29 -10.25 -0.03 -2.03 16 18 H 0.13 1.81 8.14 -2.39 -0.02 1.79 16 19 C -0.08 -1.79 5.70 31.67 0.18 -1.61 16 20 C -0.16 -2.50 6.85 -10.07 -0.07 -2.57 16 21 H 0.13 1.51 8.14 -2.39 -0.02 1.49 16 22 C -0.16 -2.54 10.21 31.44 0.32 -2.22 16 23 C -0.16 -2.17 7.04 -9.22 -0.06 -2.24 16 24 H 0.14 1.29 8.14 -2.39 -0.02 1.27 16 25 C -0.09 -1.41 6.08 31.66 0.19 -1.21 16 26 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 27 H 0.07 1.93 8.12 -2.39 -0.02 1.91 16 28 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 29 H 0.03 1.48 3.60 -2.39 -0.01 1.47 16 30 H 0.06 2.08 8.12 -2.39 -0.02 2.06 16 31 H 0.26 15.74 8.31 -92.71 -0.77 14.97 16 32 H 0.09 2.34 8.05 -2.38 -0.02 2.32 16 33 H 0.06 2.14 8.04 -2.39 -0.02 2.12 16 34 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 35 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 36 H 0.42 7.68 8.47 -92.71 -0.79 6.90 16 37 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 38 H 0.05 1.37 7.43 -2.39 -0.02 1.36 16 39 H 0.12 1.34 8.14 -2.38 -0.02 1.32 16 40 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 41 H 0.05 1.09 8.04 -2.39 -0.02 1.07 16 42 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 Total: -1.00 -74.41 337.59 2.72 -71.69 By element: Atomic # 1 Polarization: 11.98 SS G_CDS: 0.16 Total: 12.15 kcal Atomic # 6 Polarization: -3.28 SS G_CDS: 4.62 Total: 1.34 kcal Atomic # 7 Polarization: -106.28 SS G_CDS: -3.73 Total: -110.01 kcal Atomic # 8 Polarization: -24.58 SS G_CDS: -0.05 Total: -24.63 kcal Atomic # 14 Polarization: 47.76 SS G_CDS: 1.72 Total: 49.48 kcal Total: -74.41 2.72 -71.69 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714590494.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.609 kcal (2) G-P(sol) polarization free energy of solvation -74.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds