Wall clock time and date at job start Mon Mar 30 2020 00:45:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46499 * 109.47097 * 2 1 4 4 C 1.36925 * 120.00190 * 275.31072 * 3 2 1 5 5 H 1.08002 * 120.00279 * 37.57615 * 4 3 2 6 6 C 1.38814 * 120.00207 * 217.57802 * 4 3 2 7 7 N 1.31621 * 119.99882 * 21.42474 * 6 4 3 8 8 Si 1.86800 * 120.00079 * 201.43552 * 6 4 3 9 9 H 1.48496 * 109.47390 * 359.97438 * 8 6 4 10 10 H 1.48501 * 109.47300 * 119.99524 * 8 6 4 11 11 H 1.48503 * 109.46682 * 239.99520 * 8 6 4 12 12 C 1.46506 * 119.99666 * 95.31048 * 3 2 1 13 13 C 1.53007 * 109.46853 * 269.99862 * 12 3 2 14 14 N 1.46497 * 109.46894 * 180.02562 * 13 12 3 15 15 C 1.34776 * 120.00236 * 180.02562 * 14 13 12 16 16 O 1.21287 * 119.99732 * 359.97438 * 15 14 13 17 17 C 1.50697 * 120.00321 * 180.02562 * 15 14 13 18 18 C 1.53889 * 113.58770 * 179.97438 * 17 15 14 19 19 C 1.53258 * 86.88169 * 220.34805 * 18 17 15 20 20 C 1.52461 * 128.58433 * 165.10816 * 19 18 17 21 21 C 1.52591 * 128.58263 * 245.01229 * 19 18 17 22 22 C 1.53253 * 87.69264 * 25.08314 * 19 18 17 23 23 H 1.09008 * 109.46862 * 179.97438 * 1 2 3 24 24 H 1.08992 * 109.47380 * 299.99833 * 1 2 3 25 25 H 1.08996 * 109.46950 * 60.00502 * 1 2 3 26 26 H 1.09006 * 109.47470 * 240.00202 * 2 1 3 27 27 H 1.09004 * 109.47081 * 120.00111 * 2 1 3 28 28 H 0.97002 * 120.00061 * 180.02562 * 7 6 4 29 29 H 1.08990 * 109.46819 * 150.00364 * 12 3 2 30 30 H 1.08997 * 109.47438 * 29.99710 * 12 3 2 31 31 H 1.09001 * 109.46670 * 60.00214 * 13 12 3 32 32 H 1.08997 * 109.46974 * 300.00131 * 13 12 3 33 33 H 0.97000 * 120.00058 * 0.02562 * 14 13 12 34 34 H 1.08995 * 112.83127 * 311.11069 * 17 15 14 35 35 H 1.08999 * 113.64917 * 105.85024 * 18 17 15 36 36 H 1.09009 * 113.72901 * 334.85373 * 18 17 15 37 37 H 1.08994 * 117.51809 * 225.04926 * 20 19 18 38 38 H 1.09008 * 117.51546 * 10.11582 * 20 19 18 39 39 H 1.09000 * 117.53873 * 134.98716 * 21 19 18 40 40 H 1.09000 * 117.50394 * 349.85865 * 21 19 18 41 41 H 1.09005 * 113.64563 * 89.41323 * 22 19 18 42 42 H 1.08998 * 113.64347 * 220.41689 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1431 2.0633 -1.1807 5 1 1.4105 1.9278 -1.9627 6 6 3.2111 2.9289 -1.3727 7 7 4.3026 2.7981 -0.6489 8 14 3.0992 4.2797 -2.6582 9 1 1.7775 4.2137 -3.3318 10 1 3.2548 5.6024 -2.0012 11 1 4.1765 4.0966 -3.6637 12 6 2.3732 2.0326 1.2634 13 6 1.1425 2.7382 1.8366 14 7 1.4975 3.3901 3.0996 15 6 0.5649 4.0768 3.7890 16 8 -0.5681 4.1555 3.3634 17 6 0.9302 4.7479 5.0879 18 6 -0.2446 5.4898 5.7494 19 6 0.7586 6.5948 6.0977 20 6 0.4800 8.0213 6.5583 21 6 1.2312 7.0515 7.4748 22 6 1.5988 6.1220 4.9064 23 1 -0.3633 -1.0278 -0.0005 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5137 -0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5139 0.8900 28 1 5.0489 3.4032 -0.7829 29 1 3.1616 2.7640 1.0861 30 1 2.7254 1.2833 1.9722 31 1 0.3541 2.0067 2.0139 32 1 0.7903 3.4876 1.1278 33 1 2.4037 3.3275 3.4398 34 1 1.4682 4.0878 5.7683 35 1 -0.6502 4.9768 6.6214 36 1 -1.0158 5.8051 5.0465 37 1 1.0548 8.8220 6.0931 38 1 -0.5466 8.2730 6.8247 39 1 2.3001 7.2144 7.6124 40 1 0.6984 6.6649 8.3436 41 1 1.3415 6.6128 3.9678 42 1 2.6709 6.1159 5.1027 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714592391.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:21 Heat of formation + Delta-G solvation = 21.735406 kcal Electronic energy + Delta-G solvation = -20337.111439 eV Core-core repulsion = 17319.068939 eV Total energy + Delta-G solvation = -3018.042500 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.27957 -38.24898 -36.27326 -34.00574 -33.64112 -31.88807 -29.66845 -27.69126 -25.82698 -24.86990 -23.78234 -22.63026 -21.55403 -20.37814 -19.72655 -18.44915 -17.13157 -16.40188 -15.66440 -15.58217 -15.09843 -15.03599 -14.44861 -14.04574 -13.79096 -13.63463 -12.73439 -12.62501 -12.44213 -12.39107 -12.06028 -11.98186 -11.67561 -11.53795 -11.49408 -11.12759 -10.78769 -10.63512 -10.49162 -10.45925 -10.38260 -10.07910 -9.85642 -9.83400 -9.78860 -9.29101 -8.56134 -8.42049 -6.62881 -5.84145 -3.42831 2.97862 3.33176 3.42527 3.46294 3.48549 3.74773 4.21081 4.45202 4.47580 4.63557 4.70109 4.77336 5.23435 5.27321 5.32232 5.43506 5.52660 5.56129 5.65377 5.66359 5.73946 5.89471 5.94425 6.00265 6.12077 6.14838 6.17985 6.28234 6.38848 6.43789 6.52043 6.69346 6.91237 6.93519 7.04524 7.16992 7.54857 7.80071 7.99721 8.47570 8.65639 9.14290 9.76194 10.34321 11.15845 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.020023 B = 0.004473 C = 0.003946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1398.065182 B = 6258.499249 C = 7093.439622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.141 3.859 3 N -0.581 5.581 4 C -0.260 4.260 5 H 0.062 0.938 6 C 0.014 3.986 7 N -0.888 5.888 8 Si 0.895 3.105 9 H -0.275 1.275 10 H -0.287 1.287 11 H -0.289 1.289 12 C 0.138 3.862 13 C 0.096 3.904 14 N -0.719 5.719 15 C 0.515 3.485 16 O -0.549 6.549 17 C -0.132 4.132 18 C -0.074 4.074 19 C -0.163 4.163 20 C -0.167 4.167 21 C -0.152 4.152 22 C -0.081 4.081 23 H 0.036 0.964 24 H 0.044 0.956 25 H 0.050 0.950 26 H 0.046 0.954 27 H 0.034 0.966 28 H 0.254 0.746 29 H 0.098 0.902 30 H 0.028 0.972 31 H 0.051 0.949 32 H 0.062 0.938 33 H 0.397 0.603 34 H 0.111 0.889 35 H 0.069 0.931 36 H 0.099 0.901 37 H 0.094 0.906 38 H 0.094 0.906 39 H 0.095 0.905 40 H 0.095 0.905 41 H 0.090 0.910 42 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.385 5.008 14.612 15.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.015 3.985 3 N -0.301 5.301 4 C -0.390 4.390 5 H 0.079 0.921 6 C -0.187 4.187 7 N -0.530 5.530 8 Si 0.725 3.275 9 H -0.200 1.200 10 H -0.214 1.214 11 H -0.216 1.216 12 C 0.011 3.989 13 C -0.029 4.029 14 N -0.369 5.369 15 C 0.301 3.699 16 O -0.428 6.428 17 C -0.153 4.153 18 C -0.112 4.112 19 C -0.163 4.163 20 C -0.204 4.204 21 C -0.189 4.189 22 C -0.119 4.119 23 H 0.055 0.945 24 H 0.063 0.937 25 H 0.069 0.931 26 H 0.064 0.936 27 H 0.052 0.948 28 H 0.064 0.936 29 H 0.116 0.884 30 H 0.046 0.954 31 H 0.069 0.931 32 H 0.081 0.919 33 H 0.230 0.770 34 H 0.129 0.871 35 H 0.088 0.912 36 H 0.117 0.883 37 H 0.113 0.887 38 H 0.113 0.887 39 H 0.114 0.886 40 H 0.113 0.887 41 H 0.108 0.892 42 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -4.024 5.097 14.236 15.647 hybrid contribution 0.428 0.725 -0.460 0.959 sum -3.596 5.821 13.776 15.381 Atomic orbital electron populations 1.22389 0.99920 0.99065 1.01402 1.20879 0.91767 0.86993 0.98867 1.43623 1.76058 1.08311 1.02124 1.19067 1.04742 1.21194 0.93975 0.92055 1.25175 0.94142 1.01223 0.98114 1.70006 1.03196 1.37267 1.42530 0.86346 0.77794 0.82184 0.81216 1.19957 1.21392 1.21564 1.21052 0.94605 0.96918 0.86374 1.22437 1.00970 0.96505 0.82968 1.46153 1.13122 1.53045 1.24551 1.20395 0.85306 0.78564 0.85669 1.90664 1.20734 1.61224 1.70133 1.22609 1.00398 0.96628 0.95711 1.22361 0.95400 0.93551 0.99889 1.22208 1.01145 0.96514 0.96399 1.22793 1.01380 0.92596 1.03601 1.22799 1.00554 1.03032 0.92505 1.22395 0.98814 0.93431 0.97266 0.94458 0.93676 0.93117 0.93589 0.94753 0.93586 0.88431 0.95371 0.93094 0.91910 0.76974 0.87119 0.91203 0.88296 0.88731 0.88738 0.88625 0.88672 0.89163 0.90585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.16 10.21 37.16 0.38 -2.78 16 2 C 0.14 2.98 6.44 -4.04 -0.03 2.95 16 3 N -0.58 -14.20 2.43 -173.23 -0.42 -14.62 16 4 C -0.26 -7.03 9.45 -15.06 -0.14 -7.17 16 5 H 0.06 1.68 7.92 -52.49 -0.42 1.26 16 6 C 0.01 0.37 4.95 -17.43 -0.09 0.29 16 7 N -0.89 -24.76 11.47 55.49 0.64 -24.12 16 8 Si 0.90 21.43 29.60 -169.99 -5.03 16.40 16 9 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 10 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 11 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 12 C 0.14 3.08 5.45 -4.03 -0.02 3.06 16 13 C 0.10 1.99 6.00 -4.04 -0.02 1.96 16 14 N -0.72 -12.13 5.56 -60.29 -0.33 -12.47 16 15 C 0.52 8.66 7.36 -10.99 -0.08 8.58 16 16 O -0.55 -11.43 15.90 5.55 0.09 -11.35 16 17 C -0.13 -1.63 4.14 -90.85 -0.38 -2.01 16 18 C -0.07 -0.88 7.42 -26.13 -0.19 -1.08 16 19 C -0.16 -1.69 3.09 -154.73 -0.48 -2.16 16 20 C -0.17 -1.51 10.53 -26.94 -0.28 -1.80 16 21 C -0.15 -1.28 10.54 -26.88 -0.28 -1.57 16 22 C -0.08 -0.93 7.65 -26.14 -0.20 -1.13 16 23 H 0.04 0.59 8.14 -51.92 -0.42 0.17 16 24 H 0.04 0.86 6.64 -51.93 -0.34 0.51 16 25 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 26 H 0.05 0.99 8.08 -51.93 -0.42 0.57 16 27 H 0.03 0.67 7.83 -51.93 -0.41 0.27 16 28 H 0.25 6.82 8.31 -40.82 -0.34 6.48 16 29 H 0.10 2.44 5.52 -51.93 -0.29 2.15 16 30 H 0.03 0.59 7.86 -51.93 -0.41 0.18 16 31 H 0.05 1.08 6.64 -51.93 -0.34 0.73 16 32 H 0.06 1.48 8.14 -51.93 -0.42 1.06 16 33 H 0.40 5.67 8.47 -40.82 -0.35 5.32 16 34 H 0.11 1.13 8.14 -51.93 -0.42 0.71 16 35 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.10 1.36 7.43 -51.92 -0.39 0.98 16 37 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.09 0.80 8.14 -51.92 -0.42 0.38 16 39 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.09 1.15 8.09 -51.93 -0.42 0.73 16 42 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 343.73 15.07 5.18 5.18 Total: -1.00 -30.43 343.73 -8.84 -39.27 By element: Atomic # 1 Polarization: 11.71 SS G_CDS: -7.14 Total: 4.57 kcal Atomic # 6 Polarization: -1.04 SS G_CDS: -1.82 Total: -2.85 kcal Atomic # 7 Polarization: -51.09 SS G_CDS: -0.12 Total: -51.21 kcal Atomic # 8 Polarization: -11.43 SS G_CDS: 0.09 Total: -11.35 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.03 Total: 16.40 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -30.43 -8.84 -39.27 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714592391.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.004 kcal (2) G-P(sol) polarization free energy of solvation -30.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.268 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds