Wall clock time and date at job start Mon Mar 30 2020 00:45:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46499 * 109.47097 * 2 1 4 4 C 1.36925 * 120.00190 * 275.31072 * 3 2 1 5 5 H 1.08002 * 120.00279 * 37.57615 * 4 3 2 6 6 C 1.38814 * 120.00207 * 217.57802 * 4 3 2 7 7 N 1.31621 * 119.99882 * 21.42474 * 6 4 3 8 8 Si 1.86800 * 120.00079 * 201.43552 * 6 4 3 9 9 H 1.48496 * 109.47390 * 359.97438 * 8 6 4 10 10 H 1.48501 * 109.47300 * 119.99524 * 8 6 4 11 11 H 1.48503 * 109.46682 * 239.99520 * 8 6 4 12 12 C 1.46506 * 119.99666 * 95.31048 * 3 2 1 13 13 C 1.53007 * 109.46853 * 269.99862 * 12 3 2 14 14 N 1.46497 * 109.46894 * 180.02562 * 13 12 3 15 15 C 1.34776 * 120.00236 * 180.02562 * 14 13 12 16 16 O 1.21287 * 119.99732 * 359.97438 * 15 14 13 17 17 C 1.50697 * 120.00321 * 180.02562 * 15 14 13 18 18 C 1.53889 * 113.58770 * 179.97438 * 17 15 14 19 19 C 1.53258 * 86.88169 * 220.34805 * 18 17 15 20 20 C 1.52461 * 128.58433 * 165.10816 * 19 18 17 21 21 C 1.52591 * 128.58263 * 245.01229 * 19 18 17 22 22 C 1.53253 * 87.69264 * 25.08314 * 19 18 17 23 23 H 1.09008 * 109.46862 * 179.97438 * 1 2 3 24 24 H 1.08992 * 109.47380 * 299.99833 * 1 2 3 25 25 H 1.08996 * 109.46950 * 60.00502 * 1 2 3 26 26 H 1.09006 * 109.47470 * 240.00202 * 2 1 3 27 27 H 1.09004 * 109.47081 * 120.00111 * 2 1 3 28 28 H 0.97002 * 120.00061 * 180.02562 * 7 6 4 29 29 H 1.08990 * 109.46819 * 150.00364 * 12 3 2 30 30 H 1.08997 * 109.47438 * 29.99710 * 12 3 2 31 31 H 1.09001 * 109.46670 * 60.00214 * 13 12 3 32 32 H 1.08997 * 109.46974 * 300.00131 * 13 12 3 33 33 H 0.97000 * 120.00058 * 0.02562 * 14 13 12 34 34 H 1.08995 * 112.83127 * 311.11069 * 17 15 14 35 35 H 1.08999 * 113.64917 * 105.85024 * 18 17 15 36 36 H 1.09009 * 113.72901 * 334.85373 * 18 17 15 37 37 H 1.08994 * 117.51809 * 225.04926 * 20 19 18 38 38 H 1.09008 * 117.51546 * 10.11582 * 20 19 18 39 39 H 1.09000 * 117.53873 * 134.98716 * 21 19 18 40 40 H 1.09000 * 117.50394 * 349.85865 * 21 19 18 41 41 H 1.09005 * 113.64563 * 89.41323 * 22 19 18 42 42 H 1.08998 * 113.64347 * 220.41689 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1431 2.0633 -1.1807 5 1 1.4105 1.9278 -1.9627 6 6 3.2111 2.9289 -1.3727 7 7 4.3026 2.7981 -0.6489 8 14 3.0992 4.2797 -2.6582 9 1 1.7775 4.2137 -3.3318 10 1 3.2548 5.6024 -2.0012 11 1 4.1765 4.0966 -3.6637 12 6 2.3732 2.0326 1.2634 13 6 1.1425 2.7382 1.8366 14 7 1.4975 3.3901 3.0996 15 6 0.5649 4.0768 3.7890 16 8 -0.5681 4.1555 3.3634 17 6 0.9302 4.7479 5.0879 18 6 -0.2446 5.4898 5.7494 19 6 0.7586 6.5948 6.0977 20 6 0.4800 8.0213 6.5583 21 6 1.2312 7.0515 7.4748 22 6 1.5988 6.1220 4.9064 23 1 -0.3633 -1.0278 -0.0005 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5137 -0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5139 0.8900 28 1 5.0489 3.4032 -0.7829 29 1 3.1616 2.7640 1.0861 30 1 2.7254 1.2833 1.9722 31 1 0.3541 2.0067 2.0139 32 1 0.7903 3.4876 1.1278 33 1 2.4037 3.3275 3.4398 34 1 1.4682 4.0878 5.7683 35 1 -0.6502 4.9768 6.6214 36 1 -1.0158 5.8051 5.0465 37 1 1.0548 8.8220 6.0931 38 1 -0.5466 8.2730 6.8247 39 1 2.3001 7.2144 7.6124 40 1 0.6984 6.6649 8.3436 41 1 1.3415 6.6128 3.9678 42 1 2.6709 6.1159 5.1027 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714592391.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:21 Heat of formation + Delta-G solvation = 4.133608 kcal Electronic energy + Delta-G solvation = -20337.874710 eV Core-core repulsion = 17319.068939 eV Total energy + Delta-G solvation = -3018.805771 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.40050 -39.43559 -38.05749 -35.59803 -34.51437 -33.84510 -31.35123 -29.44479 -26.75109 -26.50920 -25.27352 -23.33643 -23.11560 -22.15420 -21.13219 -19.30210 -18.75260 -17.97025 -17.10526 -16.90694 -16.55494 -16.01301 -16.00222 -15.48075 -15.43349 -15.26927 -14.36413 -14.12066 -13.86562 -13.60464 -13.37460 -13.24044 -13.04936 -12.98840 -12.66183 -12.52452 -12.33304 -12.31057 -12.30122 -12.03875 -11.68428 -11.51715 -11.31199 -11.24779 -10.74002 -10.56729 -10.49153 -10.01362 -8.61359 -7.87494 -5.50406 1.41192 1.45973 1.55296 1.63546 2.23458 2.49690 2.86316 3.20395 3.39643 3.54416 3.68546 3.75245 3.89877 3.96098 4.20475 4.31251 4.40701 4.46094 4.46613 4.73927 4.75476 4.78849 4.81075 4.81682 4.83270 4.83452 5.00849 5.04315 5.06932 5.21588 5.25215 5.27346 5.31200 5.34993 5.46552 5.54989 5.65364 5.73928 6.43728 6.64431 7.13365 7.30472 7.81405 8.33590 9.08541 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.020023 B = 0.004473 C = 0.003946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1398.065182 B = 6258.499249 C = 7093.439622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.136 3.864 3 N -0.599 5.599 4 C -0.272 4.272 5 H 0.051 0.949 6 C -0.026 4.026 7 N -0.910 5.910 8 Si 0.949 3.051 9 H -0.274 1.274 10 H -0.289 1.289 11 H -0.285 1.285 12 C 0.146 3.854 13 C 0.118 3.882 14 N -0.712 5.712 15 C 0.512 3.488 16 O -0.594 6.594 17 C -0.124 4.124 18 C -0.078 4.078 19 C -0.173 4.173 20 C -0.171 4.171 21 C -0.132 4.132 22 C -0.081 4.081 23 H 0.070 0.930 24 H 0.039 0.961 25 H 0.033 0.967 26 H 0.037 0.963 27 H 0.052 0.948 28 H 0.254 0.746 29 H 0.074 0.926 30 H 0.045 0.955 31 H 0.046 0.954 32 H 0.025 0.975 33 H 0.412 0.588 34 H 0.142 0.858 35 H 0.084 0.916 36 H 0.071 0.929 37 H 0.098 0.902 38 H 0.098 0.902 39 H 0.109 0.891 40 H 0.108 0.892 41 H 0.067 0.933 42 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.944 5.178 16.520 17.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.011 3.989 3 N -0.320 5.320 4 C -0.403 4.403 5 H 0.069 0.931 6 C -0.224 4.224 7 N -0.553 5.553 8 Si 0.778 3.222 9 H -0.199 1.199 10 H -0.215 1.215 11 H -0.212 1.212 12 C 0.019 3.981 13 C -0.008 4.008 14 N -0.363 5.363 15 C 0.300 3.700 16 O -0.475 6.475 17 C -0.144 4.144 18 C -0.115 4.115 19 C -0.173 4.173 20 C -0.208 4.208 21 C -0.169 4.169 22 C -0.119 4.119 23 H 0.089 0.911 24 H 0.058 0.942 25 H 0.052 0.948 26 H 0.056 0.944 27 H 0.071 0.929 28 H 0.064 0.936 29 H 0.091 0.909 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.044 0.956 33 H 0.248 0.752 34 H 0.160 0.840 35 H 0.103 0.897 36 H 0.089 0.911 37 H 0.117 0.883 38 H 0.117 0.883 39 H 0.127 0.873 40 H 0.126 0.874 41 H 0.086 0.914 42 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -3.569 5.257 16.166 17.370 hybrid contribution 0.256 0.641 -1.038 1.247 sum -3.313 5.898 15.128 16.571 Atomic orbital electron populations 1.22217 0.98052 1.00866 1.00291 1.21016 0.93128 0.85440 0.99315 1.43870 1.76406 1.09685 1.02039 1.19198 1.04426 1.21882 0.94768 0.93147 1.25737 0.93957 1.02758 0.99989 1.70086 1.03568 1.37892 1.43799 0.85507 0.77656 0.79756 0.79329 1.19875 1.21518 1.21160 1.20918 0.94325 0.96728 0.86134 1.21903 0.99874 0.95247 0.83795 1.46022 1.14143 1.52813 1.23304 1.21255 0.84380 0.77620 0.86746 1.90643 1.22700 1.62658 1.71526 1.22717 1.01304 0.97050 0.93378 1.22304 0.94999 0.94484 0.99749 1.22098 1.00450 0.97179 0.97534 1.22905 1.02034 0.92064 1.03801 1.22930 1.01413 1.01033 0.91499 1.22356 1.00089 0.92444 0.96972 0.91149 0.94159 0.94777 0.94427 0.92932 0.93638 0.90861 0.93641 0.93548 0.95613 0.75187 0.84002 0.89740 0.91060 0.88347 0.88349 0.87290 0.87378 0.91411 0.88639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.66 10.21 71.98 0.73 -4.93 16 2 C 0.14 5.66 6.44 86.38 0.56 6.21 16 3 N -0.60 -29.45 2.43 -701.98 -1.71 -31.16 16 4 C -0.27 -14.93 9.45 84.04 0.79 -14.14 16 5 H 0.05 2.82 7.92 -2.91 -0.02 2.80 16 6 C -0.03 -1.44 4.95 84.86 0.42 -1.02 16 7 N -0.91 -51.10 11.47 21.65 0.25 -50.85 16 8 Si 0.95 44.52 29.60 68.60 2.03 46.55 16 9 H -0.27 -12.68 7.11 99.48 0.71 -11.98 16 10 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 11 H -0.29 -13.12 7.11 99.48 0.71 -12.42 16 12 C 0.15 6.54 5.45 86.38 0.47 7.01 16 13 C 0.12 4.94 6.00 86.38 0.52 5.46 16 14 N -0.71 -23.80 5.56 -463.06 -2.57 -26.37 16 15 C 0.51 17.13 7.36 87.66 0.65 17.78 16 16 O -0.59 -25.35 15.90 -3.05 -0.05 -25.40 16 17 C -0.12 -2.85 4.14 -10.94 -0.05 -2.90 16 18 C -0.08 -1.76 7.42 30.98 0.23 -1.53 16 19 C -0.17 -3.22 3.09 -52.33 -0.16 -3.38 16 20 C -0.17 -2.74 10.53 30.46 0.32 -2.42 16 21 C -0.13 -1.77 10.54 30.50 0.32 -1.45 16 22 C -0.08 -1.72 7.65 30.98 0.24 -1.48 16 23 H 0.07 2.09 8.14 -2.38 -0.02 2.07 16 24 H 0.04 1.49 6.64 -2.39 -0.02 1.48 16 25 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 26 H 0.04 1.60 8.08 -2.38 -0.02 1.58 16 27 H 0.05 1.97 7.83 -2.38 -0.02 1.95 16 28 H 0.25 13.71 8.31 -92.71 -0.77 12.94 16 29 H 0.07 3.70 5.52 -2.39 -0.01 3.69 16 30 H 0.05 1.85 7.86 -2.39 -0.02 1.83 16 31 H 0.05 1.98 6.64 -2.39 -0.02 1.96 16 32 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.41 11.27 8.47 -92.71 -0.79 10.49 16 34 H 0.14 2.43 8.14 -2.39 -0.02 2.41 16 35 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 36 H 0.07 2.01 7.43 -2.38 -0.02 1.99 16 37 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 38 H 0.10 1.49 8.14 -2.38 -0.02 1.47 16 39 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 40 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 41 H 0.07 1.73 8.09 -2.38 -0.02 1.71 16 42 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 Total: -1.00 -66.38 343.73 3.20 -63.18 By element: Atomic # 1 Polarization: 20.62 SS G_CDS: 0.21 Total: 20.83 kcal Atomic # 6 Polarization: -1.82 SS G_CDS: 5.04 Total: 3.22 kcal Atomic # 7 Polarization: -104.34 SS G_CDS: -4.03 Total: -108.37 kcal Atomic # 8 Polarization: -25.35 SS G_CDS: -0.05 Total: -25.40 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 2.03 Total: 46.55 kcal Total: -66.38 3.20 -63.18 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714592391.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.313 kcal (2) G-P(sol) polarization free energy of solvation -66.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.179 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds