Wall clock time and date at job start Mon Mar 30 2020 01:33:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46498 * 120.00676 * 2 1 4 4 C 1.53000 * 109.46890 * 270.00159 * 3 2 1 5 5 N 1.46502 * 109.47251 * 179.97438 * 4 3 2 6 6 C 1.36933 * 119.99822 * 179.97438 * 5 4 3 7 7 H 1.08000 * 120.00506 * 359.97438 * 6 5 4 8 8 C 1.38816 * 119.99802 * 179.97438 * 6 5 4 9 9 N 1.31616 * 120.00103 * 359.97438 * 8 6 5 10 10 Si 1.86801 * 120.00227 * 179.97438 * 8 6 5 11 11 H 1.48503 * 109.47132 * 59.99635 * 10 8 6 12 12 H 1.48494 * 109.47308 * 180.02562 * 10 8 6 13 13 H 1.48496 * 109.46943 * 299.99916 * 10 8 6 14 14 C 1.34779 * 119.99822 * 179.97438 * 2 1 3 15 15 O 1.21284 * 120.00435 * 175.74577 * 14 2 1 16 16 C 1.50703 * 119.99944 * 355.74161 * 14 2 1 17 17 H 1.09010 * 110.05121 * 25.64785 * 16 14 2 18 18 C 1.54386 * 110.06861 * 147.18803 * 16 14 2 19 19 C 1.54930 * 104.21907 * 142.80049 * 18 16 14 20 20 C 1.54984 * 102.81877 * 322.27441 * 19 18 16 21 21 C 1.53480 * 110.07261 * 264.16032 * 16 14 2 22 22 C 1.52567 * 121.05648 * 96.53638 * 21 16 14 23 23 C 1.52547 * 121.08359 * 24.81956 * 21 16 14 24 24 H 1.08997 * 109.47324 * 95.24477 * 1 2 3 25 25 H 1.09003 * 109.47472 * 215.25105 * 1 2 3 26 26 H 1.09001 * 109.46938 * 335.24875 * 1 2 3 27 27 H 1.08997 * 109.47260 * 149.99776 * 3 2 1 28 28 H 1.08999 * 109.46659 * 29.99404 * 3 2 1 29 29 H 1.09003 * 109.46781 * 299.99623 * 4 3 2 30 30 H 1.09002 * 109.47393 * 59.99286 * 4 3 2 31 31 H 0.96998 * 119.99542 * 359.97438 * 5 4 3 32 32 H 0.96998 * 120.00307 * 180.02562 * 9 8 6 33 33 H 1.09002 * 110.48010 * 261.47988 * 18 16 14 34 34 H 1.08997 * 110.48558 * 24.11604 * 18 16 14 35 35 H 1.08997 * 110.74174 * 203.93539 * 19 18 16 36 36 H 1.09004 * 110.74099 * 80.60978 * 19 18 16 37 37 H 1.09003 * 110.51087 * 278.92411 * 20 19 18 38 38 H 1.09001 * 110.62528 * 156.27553 * 20 19 18 39 39 H 1.09004 * 117.50921 * 356.97087 * 22 21 16 40 40 H 1.09001 * 117.51106 * 142.06982 * 22 21 16 41 41 H 1.09004 * 117.51124 * 217.89085 * 23 21 16 42 42 H 1.08996 * 117.51379 * 2.93951 * 23 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2686 0.0000 4 6 2.4526 1.7102 -1.4425 5 7 3.1847 2.9792 -1.4426 6 6 3.5274 3.5718 -2.6285 7 1 3.2584 3.1036 -3.5638 8 6 4.2207 4.7745 -2.6286 9 7 4.5481 5.3454 -1.4889 10 14 4.6888 5.5826 -4.2464 11 1 3.4600 5.8768 -5.0266 12 1 5.4182 6.8473 -3.9751 13 1 5.5609 4.6658 -5.0235 14 6 2.1388 -1.1672 0.0005 15 8 3.3492 -1.1689 -0.0774 16 6 1.3884 -2.4705 0.0980 17 1 0.3754 -2.3481 -0.2857 18 6 2.1280 -3.5684 -0.6963 19 6 1.9414 -4.8474 0.1580 20 6 2.0519 -4.3115 1.6080 21 6 1.3451 -2.9456 1.5568 22 6 0.1370 -2.6576 2.4429 23 6 1.4712 -1.9565 2.7113 24 1 -0.3634 -0.0939 -1.0233 25 1 -0.3634 -0.8392 0.5931 26 1 -0.3633 0.9333 0.4303 27 1 3.1500 1.1382 0.5138 28 1 1.6085 2.0283 0.5137 29 1 3.0416 0.9505 -1.9563 30 1 1.5002 1.8406 -1.9564 31 1 3.4267 3.3995 -0.6026 32 1 5.0322 6.1859 -1.4889 33 1 1.6762 -3.6975 -1.6798 34 1 3.1860 -3.3239 -0.7906 35 1 2.7323 -5.5684 -0.0485 36 1 0.9601 -5.2886 -0.0168 37 1 3.0973 -4.1901 1.8917 38 1 1.5434 -4.9788 2.3038 39 1 -0.6689 -2.0600 2.0167 40 1 -0.1723 -3.4355 3.1409 41 1 2.0394 -2.2733 3.5859 42 1 1.5434 -0.8979 2.4618 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714722374.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:43 Heat of formation + Delta-G solvation = -2.849163 kcal Electronic energy + Delta-G solvation = -20751.397064 eV Core-core repulsion = 17732.288498 eV Total energy + Delta-G solvation = -3019.108567 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.65694 -38.17999 -35.90130 -34.39870 -34.13918 -31.47827 -29.69899 -27.96666 -26.55020 -25.70547 -23.70084 -22.67626 -21.76259 -20.94485 -19.94734 -18.17137 -17.22301 -16.97489 -16.14640 -15.89714 -15.18224 -14.92651 -14.39387 -14.16728 -13.67039 -13.33512 -13.21780 -13.00177 -12.96982 -12.75525 -12.65362 -12.33890 -11.67141 -11.60853 -11.28752 -11.20019 -11.02975 -10.93374 -10.86301 -10.69330 -10.61751 -10.44707 -10.16495 -10.09607 -9.71555 -9.34495 -8.83125 -8.44520 -6.89381 -5.72529 -3.01556 2.76847 3.08236 3.47513 3.51330 3.52863 3.58975 4.16309 4.40504 4.57176 4.64665 4.65179 4.80746 4.93865 5.05196 5.09433 5.23492 5.33803 5.42837 5.45832 5.53776 5.56664 5.63379 5.65309 5.68380 5.72507 5.81506 5.86228 5.89045 5.93192 5.94636 6.01270 6.08763 6.15098 6.25860 6.62560 6.79708 6.97044 7.56398 7.73281 8.37872 8.46316 9.56805 10.13405 10.48712 11.50447 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.035363 B = 0.003809 C = 0.003663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.600126 B = 7349.872951 C = 7641.308412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.613 5.613 3 C 0.108 3.892 4 C 0.143 3.857 5 N -0.731 5.731 6 C -0.238 4.238 7 H 0.069 0.931 8 C -0.014 4.014 9 N -0.934 5.934 10 Si 0.909 3.091 11 H -0.286 1.286 12 H -0.290 1.290 13 H -0.286 1.286 14 C 0.520 3.480 15 O -0.528 6.528 16 C -0.078 4.078 17 H 0.092 0.908 18 C -0.113 4.113 19 C -0.119 4.119 20 C -0.086 4.086 21 C -0.116 4.116 22 C -0.167 4.167 23 C -0.169 4.169 24 H 0.056 0.944 25 H 0.067 0.933 26 H 0.075 0.925 27 H 0.082 0.918 28 H 0.075 0.925 29 H 0.023 0.977 30 H 0.017 0.983 31 H 0.384 0.616 32 H 0.256 0.744 33 H 0.069 0.931 34 H 0.087 0.913 35 H 0.070 0.930 36 H 0.067 0.933 37 H 0.073 0.927 38 H 0.066 0.934 39 H 0.095 0.905 40 H 0.096 0.904 41 H 0.096 0.904 42 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.062 -19.906 8.153 24.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.347 5.347 3 C -0.014 4.014 4 C 0.015 3.985 5 N -0.375 5.375 6 C -0.369 4.369 7 H 0.087 0.913 8 C -0.210 4.210 9 N -0.583 5.583 10 Si 0.740 3.260 11 H -0.213 1.213 12 H -0.216 1.216 13 H -0.212 1.212 14 C 0.307 3.693 15 O -0.403 6.403 16 C -0.100 4.100 17 H 0.110 0.890 18 C -0.151 4.151 19 C -0.156 4.156 20 C -0.124 4.124 21 C -0.116 4.116 22 C -0.204 4.204 23 C -0.206 4.206 24 H 0.075 0.925 25 H 0.086 0.914 26 H 0.094 0.906 27 H 0.101 0.899 28 H 0.094 0.906 29 H 0.041 0.959 30 H 0.035 0.965 31 H 0.217 0.783 32 H 0.065 0.935 33 H 0.088 0.912 34 H 0.106 0.894 35 H 0.088 0.912 36 H 0.086 0.914 37 H 0.091 0.909 38 H 0.085 0.915 39 H 0.114 0.886 40 H 0.115 0.885 41 H 0.115 0.885 42 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -11.387 -19.850 7.936 24.221 hybrid contribution 0.173 0.840 -0.637 1.069 sum -11.214 -19.009 7.299 23.246 Atomic orbital electron populations 1.21890 0.80033 1.03037 1.01860 1.47848 1.06727 1.06367 1.73747 1.21718 0.97332 0.83216 0.99140 1.20905 0.95028 0.89334 0.93272 1.42207 1.67152 1.21624 1.06545 1.19171 1.29471 1.02321 0.85974 0.91283 1.24741 1.01270 0.98034 0.96917 1.69649 1.45116 1.19543 1.24001 0.86237 0.78131 0.78641 0.83011 1.21273 1.21635 1.21232 1.20449 0.88037 0.84958 0.75838 1.90708 1.14097 1.86911 1.48585 1.21476 1.00271 0.93216 0.95014 0.88997 1.22380 1.02181 0.92877 0.97653 1.22440 1.01638 0.97036 0.94532 1.21872 1.00290 0.93021 0.97185 1.21509 1.02450 0.97298 0.90374 1.23082 0.91493 1.03339 1.02471 1.23016 0.99933 0.98321 0.99369 0.92518 0.91436 0.90609 0.89919 0.90620 0.95912 0.96528 0.78303 0.93454 0.91224 0.89424 0.91164 0.91414 0.90869 0.91517 0.88628 0.88513 0.88542 0.88455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.77 9.85 59.85 0.59 1.36 16 2 N -0.61 -8.95 2.59 -181.57 -0.47 -9.42 16 3 C 0.11 1.94 5.53 -4.04 -0.02 1.91 16 4 C 0.14 3.16 6.58 -4.04 -0.03 3.13 16 5 N -0.73 -19.65 5.60 -59.91 -0.34 -19.99 16 6 C -0.24 -7.00 9.99 -15.06 -0.15 -7.15 16 7 H 0.07 1.98 7.83 -52.49 -0.41 1.56 16 8 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 9 N -0.93 -29.05 13.06 55.49 0.72 -28.32 16 10 Si 0.91 23.07 29.55 -169.99 -5.02 18.04 16 11 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 12 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 13 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 14 C 0.52 8.07 5.42 -10.98 -0.06 8.01 16 15 O -0.53 -10.55 15.40 5.55 0.09 -10.47 16 16 C -0.08 -0.90 2.39 -90.79 -0.22 -1.11 16 17 H 0.09 0.88 6.35 -51.92 -0.33 0.55 16 18 C -0.11 -1.25 6.33 -24.99 -0.16 -1.41 16 19 C -0.12 -1.02 6.91 -24.66 -0.17 -1.19 16 20 C -0.09 -0.79 6.58 -25.23 -0.17 -0.95 16 21 C -0.12 -1.16 2.26 -154.26 -0.35 -1.51 16 22 C -0.17 -1.35 9.92 -26.91 -0.27 -1.62 16 23 C -0.17 -1.76 9.63 -26.92 -0.26 -2.02 16 24 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.07 0.55 4.48 -51.93 -0.23 0.31 16 26 H 0.08 0.72 7.83 -51.93 -0.41 0.31 16 27 H 0.08 1.64 7.48 -51.93 -0.39 1.25 16 28 H 0.08 1.23 7.86 -51.93 -0.41 0.82 16 29 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.38 10.66 7.67 -40.82 -0.31 10.35 16 32 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 33 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.09 1.20 6.92 -51.93 -0.36 0.84 16 35 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 37 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.07 0.50 8.11 -51.93 -0.42 0.08 16 39 H 0.10 0.68 6.46 -51.93 -0.34 0.35 16 40 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 42 H 0.10 1.17 7.07 -51.93 -0.37 0.80 16 LS Contribution 334.06 15.07 5.03 5.03 Total: -1.00 -34.05 334.06 -8.25 -42.30 By element: Atomic # 1 Polarization: 12.80 SS G_CDS: -6.91 Total: 5.88 kcal Atomic # 6 Polarization: -1.70 SS G_CDS: -1.35 Total: -3.06 kcal Atomic # 7 Polarization: -57.66 SS G_CDS: -0.08 Total: -57.74 kcal Atomic # 8 Polarization: -10.55 SS G_CDS: 0.09 Total: -10.47 kcal Atomic # 14 Polarization: 23.07 SS G_CDS: -5.02 Total: 18.04 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -34.05 -8.25 -42.30 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714722374.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.450 kcal (2) G-P(sol) polarization free energy of solvation -34.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds