Wall clock time and date at job start Mon Mar 30 2020 01:33:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46498 * 120.00676 * 2 1 4 4 C 1.53000 * 109.46890 * 270.00159 * 3 2 1 5 5 N 1.46502 * 109.47251 * 179.97438 * 4 3 2 6 6 C 1.36933 * 119.99822 * 179.97438 * 5 4 3 7 7 H 1.08000 * 120.00506 * 359.97438 * 6 5 4 8 8 C 1.38816 * 119.99802 * 179.97438 * 6 5 4 9 9 N 1.31616 * 120.00103 * 359.97438 * 8 6 5 10 10 Si 1.86801 * 120.00227 * 179.97438 * 8 6 5 11 11 H 1.48503 * 109.47132 * 59.99635 * 10 8 6 12 12 H 1.48494 * 109.47308 * 180.02562 * 10 8 6 13 13 H 1.48496 * 109.46943 * 299.99916 * 10 8 6 14 14 C 1.34779 * 119.99822 * 179.97438 * 2 1 3 15 15 O 1.21284 * 120.00435 * 175.74577 * 14 2 1 16 16 C 1.50703 * 119.99944 * 355.74161 * 14 2 1 17 17 H 1.09010 * 110.05121 * 25.64785 * 16 14 2 18 18 C 1.54386 * 110.06861 * 147.18803 * 16 14 2 19 19 C 1.54930 * 104.21907 * 142.80049 * 18 16 14 20 20 C 1.54984 * 102.81877 * 322.27441 * 19 18 16 21 21 C 1.53480 * 110.07261 * 264.16032 * 16 14 2 22 22 C 1.52567 * 121.05648 * 96.53638 * 21 16 14 23 23 C 1.52547 * 121.08359 * 24.81956 * 21 16 14 24 24 H 1.08997 * 109.47324 * 95.24477 * 1 2 3 25 25 H 1.09003 * 109.47472 * 215.25105 * 1 2 3 26 26 H 1.09001 * 109.46938 * 335.24875 * 1 2 3 27 27 H 1.08997 * 109.47260 * 149.99776 * 3 2 1 28 28 H 1.08999 * 109.46659 * 29.99404 * 3 2 1 29 29 H 1.09003 * 109.46781 * 299.99623 * 4 3 2 30 30 H 1.09002 * 109.47393 * 59.99286 * 4 3 2 31 31 H 0.96998 * 119.99542 * 359.97438 * 5 4 3 32 32 H 0.96998 * 120.00307 * 180.02562 * 9 8 6 33 33 H 1.09002 * 110.48010 * 261.47988 * 18 16 14 34 34 H 1.08997 * 110.48558 * 24.11604 * 18 16 14 35 35 H 1.08997 * 110.74174 * 203.93539 * 19 18 16 36 36 H 1.09004 * 110.74099 * 80.60978 * 19 18 16 37 37 H 1.09003 * 110.51087 * 278.92411 * 20 19 18 38 38 H 1.09001 * 110.62528 * 156.27553 * 20 19 18 39 39 H 1.09004 * 117.50921 * 356.97087 * 22 21 16 40 40 H 1.09001 * 117.51106 * 142.06982 * 22 21 16 41 41 H 1.09004 * 117.51124 * 217.89085 * 23 21 16 42 42 H 1.08996 * 117.51379 * 2.93951 * 23 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2686 0.0000 4 6 2.4526 1.7102 -1.4425 5 7 3.1847 2.9792 -1.4426 6 6 3.5274 3.5718 -2.6285 7 1 3.2584 3.1036 -3.5638 8 6 4.2207 4.7745 -2.6286 9 7 4.5481 5.3454 -1.4889 10 14 4.6888 5.5826 -4.2464 11 1 3.4600 5.8768 -5.0266 12 1 5.4182 6.8473 -3.9751 13 1 5.5609 4.6658 -5.0235 14 6 2.1388 -1.1672 0.0005 15 8 3.3492 -1.1689 -0.0774 16 6 1.3884 -2.4705 0.0980 17 1 0.3754 -2.3481 -0.2857 18 6 2.1280 -3.5684 -0.6963 19 6 1.9414 -4.8474 0.1580 20 6 2.0519 -4.3115 1.6080 21 6 1.3451 -2.9456 1.5568 22 6 0.1370 -2.6576 2.4429 23 6 1.4712 -1.9565 2.7113 24 1 -0.3634 -0.0939 -1.0233 25 1 -0.3634 -0.8392 0.5931 26 1 -0.3633 0.9333 0.4303 27 1 3.1500 1.1382 0.5138 28 1 1.6085 2.0283 0.5137 29 1 3.0416 0.9505 -1.9563 30 1 1.5002 1.8406 -1.9564 31 1 3.4267 3.3995 -0.6026 32 1 5.0322 6.1859 -1.4889 33 1 1.6762 -3.6975 -1.6798 34 1 3.1860 -3.3239 -0.7906 35 1 2.7323 -5.5684 -0.0485 36 1 0.9601 -5.2886 -0.0168 37 1 3.0973 -4.1901 1.8917 38 1 1.5434 -4.9788 2.3038 39 1 -0.6689 -2.0600 2.0167 40 1 -0.1723 -3.4355 3.1409 41 1 2.0394 -2.2733 3.5859 42 1 1.5434 -0.8979 2.4618 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714722374.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:42 Heat of formation + Delta-G solvation = -24.587988 kcal Electronic energy + Delta-G solvation = -20752.339730 eV Core-core repulsion = 17732.288498 eV Total energy + Delta-G solvation = -3020.051233 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.70065 -39.19668 -37.39901 -36.13616 -35.00098 -33.46986 -30.95627 -29.35081 -27.60511 -26.72831 -25.53315 -23.48100 -23.37844 -21.92812 -20.96519 -19.36858 -19.07605 -18.17811 -17.26952 -16.98425 -16.63133 -15.97705 -15.89627 -15.48280 -15.15637 -15.01315 -14.77622 -14.25878 -14.04015 -13.72261 -13.49044 -13.31159 -13.10363 -12.89345 -12.76915 -12.55739 -12.35220 -12.23095 -12.19450 -11.96987 -11.90346 -11.79735 -11.50587 -11.17214 -11.11689 -10.99960 -10.38593 -9.72043 -9.10486 -8.00426 -5.31887 1.44007 1.48651 1.54673 1.58082 1.92990 2.53625 2.81234 3.32372 3.36230 3.61938 3.67166 3.86596 4.00922 4.02725 4.11886 4.20989 4.25194 4.28712 4.34569 4.45049 4.51123 4.60565 4.66371 4.77286 4.79679 4.87412 4.92307 4.95923 5.02159 5.05586 5.09278 5.16267 5.18897 5.23321 5.28353 5.39044 5.45814 5.53574 6.20664 6.39723 7.17577 7.26718 7.97647 8.23923 9.22773 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.035363 B = 0.003809 C = 0.003663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.600126 B = 7349.872951 C = 7641.308412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.611 5.611 3 C 0.123 3.877 4 C 0.150 3.850 5 N -0.743 5.743 6 C -0.256 4.256 7 H 0.072 0.928 8 C -0.071 4.071 9 N -0.968 5.968 10 Si 0.980 3.020 11 H -0.272 1.272 12 H -0.290 1.290 13 H -0.280 1.280 14 C 0.513 3.487 15 O -0.585 6.585 16 C -0.072 4.072 17 H 0.119 0.881 18 C -0.119 4.119 19 C -0.110 4.110 20 C -0.087 4.087 21 C -0.128 4.128 22 C -0.134 4.134 23 C -0.192 4.192 24 H 0.067 0.933 25 H 0.095 0.905 26 H 0.088 0.912 27 H 0.054 0.946 28 H 0.096 0.904 29 H -0.004 1.004 30 H 0.029 0.971 31 H 0.375 0.625 32 H 0.254 0.746 33 H 0.081 0.919 34 H 0.050 0.950 35 H 0.074 0.926 36 H 0.092 0.908 37 H 0.052 0.948 38 H 0.090 0.910 39 H 0.112 0.888 40 H 0.118 0.882 41 H 0.096 0.904 42 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.778 -21.249 7.957 27.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.343 5.343 3 C -0.001 4.001 4 C 0.023 3.977 5 N -0.387 5.387 6 C -0.387 4.387 7 H 0.090 0.910 8 C -0.264 4.264 9 N -0.618 5.618 10 Si 0.807 3.193 11 H -0.198 1.198 12 H -0.216 1.216 13 H -0.207 1.207 14 C 0.303 3.697 15 O -0.465 6.465 16 C -0.093 4.093 17 H 0.137 0.863 18 C -0.157 4.157 19 C -0.147 4.147 20 C -0.124 4.124 21 C -0.128 4.128 22 C -0.171 4.171 23 C -0.229 4.229 24 H 0.086 0.914 25 H 0.114 0.886 26 H 0.106 0.894 27 H 0.073 0.927 28 H 0.114 0.886 29 H 0.014 0.986 30 H 0.047 0.953 31 H 0.207 0.793 32 H 0.063 0.937 33 H 0.100 0.900 34 H 0.069 0.931 35 H 0.093 0.907 36 H 0.110 0.890 37 H 0.070 0.930 38 H 0.109 0.891 39 H 0.130 0.870 40 H 0.136 0.864 41 H 0.114 0.886 42 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -14.167 -21.226 7.737 26.667 hybrid contribution 1.020 1.234 -0.561 1.696 sum -13.147 -19.992 7.176 24.981 Atomic orbital electron populations 1.22216 0.76863 1.05049 1.03298 1.47942 1.08567 1.04847 1.72964 1.21342 0.97182 0.85424 0.96124 1.20935 0.94168 0.86713 0.95928 1.42390 1.67694 1.22957 1.05615 1.19562 1.29536 1.02750 0.86897 0.91007 1.25643 1.01420 0.98701 1.00613 1.69810 1.45884 1.19834 1.26234 0.85136 0.78102 0.77314 0.78734 1.19801 1.21568 1.20666 1.21331 0.87657 0.86420 0.74316 1.90681 1.16835 1.87790 1.51170 1.21553 1.00744 0.90514 0.96493 0.86276 1.22407 1.00009 0.94292 0.98995 1.22435 1.03156 0.95763 0.93359 1.21893 0.99327 0.93109 0.98108 1.21598 1.04529 0.97400 0.89316 1.23209 0.90336 1.02648 1.00883 1.22994 1.02786 0.97356 0.99812 0.91433 0.88634 0.89371 0.92716 0.88614 0.98599 0.95265 0.79264 0.93690 0.89999 0.93107 0.90717 0.88963 0.92968 0.89140 0.87019 0.86400 0.88596 0.90576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.20 9.85 127.77 1.26 2.46 16 2 N -0.61 -17.60 2.59 -846.76 -2.19 -19.79 16 3 C 0.12 4.50 5.53 86.38 0.48 4.98 16 4 C 0.15 6.78 6.58 86.38 0.57 7.35 16 5 N -0.74 -41.00 5.60 -343.44 -1.92 -42.92 16 6 C -0.26 -15.25 9.99 84.04 0.84 -14.41 16 7 H 0.07 4.14 7.83 -2.91 -0.02 4.11 16 8 C -0.07 -4.26 5.50 84.86 0.47 -3.79 16 9 N -0.97 -61.06 13.06 21.65 0.28 -60.78 16 10 Si 0.98 47.56 29.55 68.60 2.03 49.58 16 11 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 12 H -0.29 -13.94 7.11 99.48 0.71 -13.23 16 13 H -0.28 -13.29 7.11 99.48 0.71 -12.58 16 14 C 0.51 16.18 5.42 87.66 0.48 16.66 16 15 O -0.59 -24.96 15.40 -3.04 -0.05 -25.00 16 16 C -0.07 -1.54 2.39 -10.91 -0.03 -1.57 16 17 H 0.12 1.87 6.35 -2.38 -0.02 1.85 16 18 C -0.12 -2.56 6.33 31.72 0.20 -2.36 16 19 C -0.11 -1.66 6.91 31.93 0.22 -1.44 16 20 C -0.09 -1.43 6.58 31.57 0.21 -1.22 16 21 C -0.13 -2.32 2.26 -52.02 -0.12 -2.43 16 22 C -0.13 -1.66 9.92 30.48 0.30 -1.36 16 23 C -0.19 -3.78 9.63 30.47 0.29 -3.49 16 24 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 25 H 0.10 1.17 4.48 -2.39 -0.01 1.16 16 26 H 0.09 1.40 7.83 -2.39 -0.02 1.38 16 27 H 0.05 2.31 7.48 -2.39 -0.02 2.29 16 28 H 0.10 3.09 7.86 -2.39 -0.02 3.08 16 29 H 0.00 -0.20 8.14 -2.39 -0.02 -0.22 16 30 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.38 21.57 7.67 -92.71 -0.71 20.86 16 32 H 0.25 15.43 8.31 -92.71 -0.77 14.66 16 33 H 0.08 1.50 8.14 -2.39 -0.02 1.49 16 34 H 0.05 1.47 6.92 -2.39 -0.02 1.46 16 35 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 36 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 37 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 38 H 0.09 1.06 8.11 -2.39 -0.02 1.04 16 39 H 0.11 1.04 6.46 -2.39 -0.02 1.02 16 40 H 0.12 1.03 8.14 -2.39 -0.02 1.01 16 41 H 0.10 1.84 8.14 -2.38 -0.02 1.82 16 42 H 0.08 1.82 7.07 -2.39 -0.02 1.80 16 Total: -1.00 -76.60 334.06 3.61 -73.00 By element: Atomic # 1 Polarization: 26.24 SS G_CDS: 0.29 Total: 26.54 kcal Atomic # 6 Polarization: -5.79 SS G_CDS: 5.17 Total: -0.62 kcal Atomic # 7 Polarization: -119.65 SS G_CDS: -3.83 Total: -123.49 kcal Atomic # 8 Polarization: -24.96 SS G_CDS: -0.05 Total: -25.00 kcal Atomic # 14 Polarization: 47.56 SS G_CDS: 2.03 Total: 49.58 kcal Total: -76.60 3.61 -73.00 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714722374.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.408 kcal (2) G-P(sol) polarization free energy of solvation -76.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds