Wall clock time and date at job start Mon Mar 30 2020 01:33:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46494 * 120.00026 * 2 1 4 4 C 1.52997 * 109.47482 * 89.99965 * 3 2 1 5 5 N 1.46505 * 109.47385 * 179.97438 * 4 3 2 6 6 C 1.36931 * 119.99820 * 179.72194 * 5 4 3 7 7 H 1.08003 * 120.00363 * 0.02562 * 6 5 4 8 8 C 1.38812 * 119.99513 * 180.02562 * 6 5 4 9 9 N 1.31620 * 120.00478 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 119.99744 * 179.97438 * 8 6 5 11 11 H 1.48502 * 109.47426 * 0.02562 * 10 8 6 12 12 H 1.48503 * 109.47140 * 120.00552 * 10 8 6 13 13 H 1.48504 * 109.47476 * 239.99974 * 10 8 6 14 14 C 1.34779 * 119.99729 * 179.97438 * 2 1 3 15 15 O 1.21287 * 119.99779 * 185.09289 * 14 2 1 16 16 C 1.50697 * 120.00294 * 5.09088 * 14 2 1 17 17 H 1.09002 * 110.05212 * 22.69768 * 16 14 2 18 18 C 1.54378 * 110.07116 * 261.20835 * 16 14 2 19 19 C 1.54930 * 104.22807 * 217.21805 * 18 16 14 20 20 C 1.54988 * 102.81329 * 37.71909 * 19 18 16 21 21 C 1.53485 * 110.06820 * 144.23956 * 16 14 2 22 22 C 1.52552 * 121.08815 * 335.14366 * 21 16 14 23 23 C 1.52571 * 121.05019 * 263.43123 * 21 16 14 24 24 H 1.08999 * 109.46816 * 86.63880 * 1 2 3 25 25 H 1.09003 * 109.46754 * 206.63956 * 1 2 3 26 26 H 1.09000 * 109.46988 * 326.63504 * 1 2 3 27 27 H 1.09001 * 109.47166 * 329.99906 * 3 2 1 28 28 H 1.09002 * 109.46877 * 210.00113 * 3 2 1 29 29 H 1.09001 * 109.46968 * 59.99820 * 4 3 2 30 30 H 1.09002 * 109.47184 * 299.99959 * 4 3 2 31 31 H 0.97001 * 119.99298 * 0.02562 * 5 4 3 32 32 H 0.96998 * 120.00386 * 180.02562 * 9 8 6 33 33 H 1.09001 * 110.48309 * 335.90481 * 18 16 14 34 34 H 1.09003 * 110.48565 * 98.40372 * 18 16 14 35 35 H 1.08997 * 110.74385 * 156.05141 * 19 18 16 36 36 H 1.09006 * 110.74082 * 279.38995 * 19 18 16 37 37 H 1.08995 * 110.51411 * 81.07473 * 20 19 18 38 38 H 1.09009 * 110.51117 * 203.64723 * 20 19 18 39 39 H 1.08993 * 117.50773 * 357.04100 * 22 21 16 40 40 H 1.09002 * 117.50423 * 142.12052 * 22 21 16 41 41 H 1.09006 * 117.51121 * 217.94351 * 23 21 16 42 42 H 1.09001 * 117.51027 * 2.99452 * 23 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7104 1.4424 5 7 3.1856 2.9789 1.4424 6 6 3.5230 3.5746 2.6283 7 1 3.2491 3.1092 3.5636 8 6 4.2171 4.7767 2.6282 9 7 4.5505 5.3442 1.4883 10 14 4.6768 5.5899 4.2458 11 1 4.1898 4.7569 5.3746 12 1 6.1534 5.7233 4.3308 13 1 4.0534 6.9357 4.3182 14 6 2.1389 -1.1673 0.0005 15 8 3.3481 -1.1693 0.0938 16 6 1.3898 -2.4698 -0.1147 17 1 0.4180 -2.3023 -0.5790 18 6 1.2079 -3.1017 1.2820 19 6 1.3682 -4.6229 1.0356 20 6 2.4899 -4.6817 -0.0323 21 6 2.2039 -3.4741 -0.9420 22 6 3.2356 -3.0017 -1.9617 23 6 1.9383 -3.6644 -2.4323 24 1 -0.3633 0.0603 -1.0259 25 1 -0.3633 -0.9186 0.4608 26 1 -0.3633 0.8583 0.5652 27 1 1.6084 2.0283 -0.5139 28 1 3.1499 1.1383 -0.5139 29 1 3.0416 0.9508 1.9563 30 1 1.5001 1.8408 1.9563 31 1 3.4280 3.3988 0.6023 32 1 5.0358 6.1840 1.4883 33 1 1.9771 -2.7430 1.9661 34 1 0.2157 -2.8796 1.6750 35 1 1.6775 -5.1314 1.9487 36 1 0.4435 -5.0507 0.6483 37 1 3.4690 -4.5834 0.4363 38 1 2.4300 -5.6115 -0.5983 39 1 3.3365 -1.9273 -2.1150 40 1 4.1564 -3.5783 -2.0503 41 1 2.0058 -4.6769 -2.8305 42 1 1.1855 -3.0263 -2.8951 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714722375.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:45 Heat of formation + Delta-G solvation = -2.823701 kcal Electronic energy + Delta-G solvation = -20696.876764 eV Core-core repulsion = 17677.769302 eV Total energy + Delta-G solvation = -3019.107462 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.57694 -38.16358 -35.73208 -34.48905 -34.13375 -31.48276 -29.72019 -27.93256 -26.43490 -25.75293 -23.68852 -22.50604 -21.70630 -21.11224 -19.83006 -18.18396 -17.28578 -16.99833 -15.89932 -15.68240 -15.11050 -15.04724 -14.38663 -14.22462 -13.65956 -13.41517 -13.23238 -13.08543 -12.87210 -12.69935 -12.56841 -12.25586 -11.68736 -11.51203 -11.26083 -11.19733 -11.02683 -10.96762 -10.87084 -10.83400 -10.64102 -10.32846 -10.05056 -9.89615 -9.72722 -9.33382 -8.84484 -8.42209 -6.89632 -5.73247 -3.02201 2.79329 3.10030 3.46095 3.51577 3.54069 3.73071 4.17400 4.47952 4.60760 4.65198 4.75715 4.88517 4.99451 5.05636 5.12190 5.19627 5.36976 5.45504 5.52661 5.53708 5.61896 5.63975 5.66784 5.67757 5.75367 5.83096 5.88238 5.91618 5.96664 6.03839 6.08117 6.12928 6.15434 6.18778 6.62119 6.79181 6.97403 7.58484 7.73740 8.39804 8.45697 9.56255 10.12878 10.48092 11.49855 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.031141 B = 0.003826 C = 0.003767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.917260 B = 7316.691742 C = 7430.418845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.615 5.615 3 C 0.109 3.891 4 C 0.143 3.857 5 N -0.731 5.731 6 C -0.236 4.236 7 H 0.070 0.930 8 C -0.015 4.015 9 N -0.934 5.934 10 Si 0.908 3.092 11 H -0.280 1.280 12 H -0.291 1.291 13 H -0.291 1.291 14 C 0.515 3.485 15 O -0.522 6.522 16 C -0.078 4.078 17 H 0.091 0.909 18 C -0.109 4.109 19 C -0.119 4.119 20 C -0.087 4.087 21 C -0.113 4.113 22 C -0.150 4.150 23 C -0.174 4.174 24 H 0.053 0.947 25 H 0.070 0.930 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.082 0.918 29 H 0.023 0.977 30 H 0.016 0.984 31 H 0.384 0.616 32 H 0.255 0.745 33 H 0.075 0.925 34 H 0.072 0.928 35 H 0.070 0.930 36 H 0.069 0.931 37 H 0.073 0.927 38 H 0.065 0.935 39 H 0.097 0.903 40 H 0.094 0.906 41 H 0.094 0.906 42 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.314 -20.483 -6.564 24.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.349 5.349 3 C -0.014 4.014 4 C 0.015 3.985 5 N -0.376 5.376 6 C -0.368 4.368 7 H 0.088 0.912 8 C -0.210 4.210 9 N -0.583 5.583 10 Si 0.739 3.261 11 H -0.206 1.206 12 H -0.218 1.218 13 H -0.218 1.218 14 C 0.302 3.698 15 O -0.397 6.397 16 C -0.099 4.099 17 H 0.109 0.891 18 C -0.147 4.147 19 C -0.156 4.156 20 C -0.124 4.124 21 C -0.114 4.114 22 C -0.187 4.187 23 C -0.211 4.211 24 H 0.072 0.928 25 H 0.088 0.912 26 H 0.094 0.906 27 H 0.094 0.906 28 H 0.101 0.899 29 H 0.041 0.959 30 H 0.034 0.966 31 H 0.217 0.783 32 H 0.064 0.936 33 H 0.094 0.906 34 H 0.091 0.909 35 H 0.089 0.911 36 H 0.087 0.913 37 H 0.092 0.908 38 H 0.084 0.916 39 H 0.115 0.885 40 H 0.112 0.888 41 H 0.112 0.888 42 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -10.647 -20.442 -6.332 23.903 hybrid contribution 0.217 0.842 0.573 1.042 sum -10.430 -19.600 -5.759 22.937 Atomic orbital electron populations 1.21812 0.79993 1.03233 1.01589 1.47879 1.06783 1.06372 1.73836 1.21674 0.97267 0.83351 0.99090 1.20900 0.94984 0.89349 0.93280 1.42226 1.67137 1.21621 1.06570 1.19260 1.29237 1.02267 0.86001 0.91172 1.24744 1.01305 0.98066 0.96918 1.69671 1.45066 1.19636 1.23894 0.86097 0.77916 0.79142 0.82933 1.20558 1.21809 1.21849 1.20536 0.88102 0.84816 0.76329 1.90729 1.14014 1.86912 1.48082 1.21468 0.98796 0.92054 0.97615 0.89067 1.22300 1.02346 0.95450 0.94645 1.22445 0.98756 0.95579 0.98842 1.21869 0.99204 0.95520 0.95792 1.21413 1.02718 0.97334 0.89922 1.22892 0.92974 1.01367 1.01450 1.23084 1.00625 1.02014 0.95416 0.92809 0.91161 0.90649 0.90645 0.89946 0.95870 0.96570 0.78303 0.93557 0.90643 0.90921 0.91147 0.91270 0.90822 0.91607 0.88486 0.88797 0.88785 0.89048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.79 9.85 59.85 0.59 1.38 16 2 N -0.61 -8.99 2.87 -181.57 -0.52 -9.52 16 3 C 0.11 1.94 5.50 -4.05 -0.02 1.92 16 4 C 0.14 3.15 6.58 -4.04 -0.03 3.12 16 5 N -0.73 -19.61 5.60 -59.91 -0.34 -19.94 16 6 C -0.24 -6.93 9.99 -15.06 -0.15 -7.08 16 7 H 0.07 2.01 7.83 -52.48 -0.41 1.60 16 8 C -0.01 -0.43 5.50 -17.43 -0.10 -0.53 16 9 N -0.93 -29.01 13.06 55.49 0.72 -28.29 16 10 Si 0.91 23.04 29.55 -169.99 -5.02 18.02 16 11 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 12 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 13 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 14 C 0.51 7.91 5.77 -10.99 -0.06 7.84 16 15 O -0.52 -10.21 14.58 5.55 0.08 -10.13 16 16 C -0.08 -0.88 2.29 -90.80 -0.21 -1.09 16 17 H 0.09 0.85 6.45 -51.93 -0.33 0.51 16 18 C -0.11 -1.11 6.25 -24.99 -0.16 -1.27 16 19 C -0.12 -1.00 6.91 -24.66 -0.17 -1.17 16 20 C -0.09 -0.84 6.58 -25.23 -0.17 -1.00 16 21 C -0.11 -1.25 2.06 -154.25 -0.32 -1.57 16 22 C -0.15 -1.82 8.94 -26.92 -0.24 -2.06 16 23 C -0.17 -1.66 10.24 -26.91 -0.28 -1.93 16 24 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.07 0.57 6.27 -51.93 -0.33 0.25 16 26 H 0.07 0.77 8.10 -51.93 -0.42 0.35 16 27 H 0.08 1.24 8.07 -51.93 -0.42 0.82 16 28 H 0.08 1.63 7.50 -51.93 -0.39 1.24 16 29 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.38 10.65 7.67 -40.82 -0.31 10.33 16 32 H 0.25 7.59 8.31 -40.82 -0.34 7.26 16 33 H 0.07 0.94 7.85 -51.93 -0.41 0.53 16 34 H 0.07 0.60 8.06 -51.93 -0.42 0.18 16 35 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.07 0.54 8.11 -51.92 -0.42 0.11 16 39 H 0.10 1.40 6.82 -51.93 -0.35 1.05 16 40 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 41 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 42 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 337.76 15.07 5.09 5.09 Total: -1.00 -33.94 337.76 -8.44 -42.38 By element: Atomic # 1 Polarization: 13.00 SS G_CDS: -7.15 Total: 5.84 kcal Atomic # 6 Polarization: -2.15 SS G_CDS: -1.30 Total: -3.45 kcal Atomic # 7 Polarization: -57.61 SS G_CDS: -0.13 Total: -57.75 kcal Atomic # 8 Polarization: -10.21 SS G_CDS: 0.08 Total: -10.13 kcal Atomic # 14 Polarization: 23.04 SS G_CDS: -5.02 Total: 18.02 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -33.94 -8.44 -42.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714722375.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.561 kcal (2) G-P(sol) polarization free energy of solvation -33.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds