Wall clock time and date at job start Mon Mar 30 2020 01:33:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46494 * 120.00026 * 2 1 4 4 C 1.52997 * 109.47482 * 89.99965 * 3 2 1 5 5 N 1.46505 * 109.47385 * 179.97438 * 4 3 2 6 6 C 1.36931 * 119.99820 * 179.72194 * 5 4 3 7 7 H 1.08003 * 120.00363 * 0.02562 * 6 5 4 8 8 C 1.38812 * 119.99513 * 180.02562 * 6 5 4 9 9 N 1.31620 * 120.00478 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 119.99744 * 179.97438 * 8 6 5 11 11 H 1.48502 * 109.47426 * 0.02562 * 10 8 6 12 12 H 1.48503 * 109.47140 * 120.00552 * 10 8 6 13 13 H 1.48504 * 109.47476 * 239.99974 * 10 8 6 14 14 C 1.34779 * 119.99729 * 179.97438 * 2 1 3 15 15 O 1.21287 * 119.99779 * 185.09289 * 14 2 1 16 16 C 1.50697 * 120.00294 * 5.09088 * 14 2 1 17 17 H 1.09002 * 110.05212 * 22.69768 * 16 14 2 18 18 C 1.54378 * 110.07116 * 261.20835 * 16 14 2 19 19 C 1.54930 * 104.22807 * 217.21805 * 18 16 14 20 20 C 1.54988 * 102.81329 * 37.71909 * 19 18 16 21 21 C 1.53485 * 110.06820 * 144.23956 * 16 14 2 22 22 C 1.52552 * 121.08815 * 335.14366 * 21 16 14 23 23 C 1.52571 * 121.05019 * 263.43123 * 21 16 14 24 24 H 1.08999 * 109.46816 * 86.63880 * 1 2 3 25 25 H 1.09003 * 109.46754 * 206.63956 * 1 2 3 26 26 H 1.09000 * 109.46988 * 326.63504 * 1 2 3 27 27 H 1.09001 * 109.47166 * 329.99906 * 3 2 1 28 28 H 1.09002 * 109.46877 * 210.00113 * 3 2 1 29 29 H 1.09001 * 109.46968 * 59.99820 * 4 3 2 30 30 H 1.09002 * 109.47184 * 299.99959 * 4 3 2 31 31 H 0.97001 * 119.99298 * 0.02562 * 5 4 3 32 32 H 0.96998 * 120.00386 * 180.02562 * 9 8 6 33 33 H 1.09001 * 110.48309 * 335.90481 * 18 16 14 34 34 H 1.09003 * 110.48565 * 98.40372 * 18 16 14 35 35 H 1.08997 * 110.74385 * 156.05141 * 19 18 16 36 36 H 1.09006 * 110.74082 * 279.38995 * 19 18 16 37 37 H 1.08995 * 110.51411 * 81.07473 * 20 19 18 38 38 H 1.09009 * 110.51117 * 203.64723 * 20 19 18 39 39 H 1.08993 * 117.50773 * 357.04100 * 22 21 16 40 40 H 1.09002 * 117.50423 * 142.12052 * 22 21 16 41 41 H 1.09006 * 117.51121 * 217.94351 * 23 21 16 42 42 H 1.09001 * 117.51027 * 2.99452 * 23 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7104 1.4424 5 7 3.1856 2.9789 1.4424 6 6 3.5230 3.5746 2.6283 7 1 3.2491 3.1092 3.5636 8 6 4.2171 4.7767 2.6282 9 7 4.5505 5.3442 1.4883 10 14 4.6768 5.5899 4.2458 11 1 4.1898 4.7569 5.3746 12 1 6.1534 5.7233 4.3308 13 1 4.0534 6.9357 4.3182 14 6 2.1389 -1.1673 0.0005 15 8 3.3481 -1.1693 0.0938 16 6 1.3898 -2.4698 -0.1147 17 1 0.4180 -2.3023 -0.5790 18 6 1.2079 -3.1017 1.2820 19 6 1.3682 -4.6229 1.0356 20 6 2.4899 -4.6817 -0.0323 21 6 2.2039 -3.4741 -0.9420 22 6 3.2356 -3.0017 -1.9617 23 6 1.9383 -3.6644 -2.4323 24 1 -0.3633 0.0603 -1.0259 25 1 -0.3633 -0.9186 0.4608 26 1 -0.3633 0.8583 0.5652 27 1 1.6084 2.0283 -0.5139 28 1 3.1499 1.1383 -0.5139 29 1 3.0416 0.9508 1.9563 30 1 1.5001 1.8408 1.9563 31 1 3.4280 3.3988 0.6023 32 1 5.0358 6.1840 1.4883 33 1 1.9771 -2.7430 1.9661 34 1 0.2157 -2.8796 1.6750 35 1 1.6775 -5.1314 1.9487 36 1 0.4435 -5.0507 0.6483 37 1 3.4690 -4.5834 0.4363 38 1 2.4300 -5.6115 -0.5983 39 1 3.3365 -1.9273 -2.1150 40 1 4.1564 -3.5783 -2.0503 41 1 2.0058 -4.6769 -2.8305 42 1 1.1855 -3.0263 -2.8951 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714722375.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:45 Heat of formation + Delta-G solvation = -24.545606 kcal Electronic energy + Delta-G solvation = -20697.818696 eV Core-core repulsion = 17677.769302 eV Total energy + Delta-G solvation = -3020.049395 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.63248 -39.20277 -37.26602 -36.11213 -35.09771 -33.45679 -30.97685 -29.31210 -27.51356 -26.72566 -25.55612 -23.45161 -23.34266 -21.99349 -20.93048 -19.33999 -19.10605 -18.25570 -17.16096 -16.81126 -16.45051 -16.11395 -15.89104 -15.50362 -15.16393 -15.02791 -14.79585 -14.24959 -14.14232 -13.57093 -13.46989 -13.23975 -13.10608 -12.93090 -12.76569 -12.55919 -12.35998 -12.30691 -12.11928 -11.93719 -11.90016 -11.81090 -11.61832 -11.15768 -11.02757 -10.85032 -10.42649 -9.67825 -9.10551 -8.01001 -5.32318 1.43947 1.46276 1.56325 1.62060 1.95033 2.53115 2.86007 3.32138 3.34517 3.66133 3.69024 3.93523 4.02199 4.02825 4.15364 4.20842 4.26361 4.27835 4.35911 4.42400 4.51621 4.67992 4.72202 4.77718 4.79820 4.88604 4.93234 4.96906 5.01311 5.03755 5.08612 5.14211 5.17736 5.24670 5.29185 5.39724 5.44584 5.53978 6.20468 6.43887 7.21829 7.26464 7.97358 8.23478 9.22645 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.031141 B = 0.003826 C = 0.003767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.917260 B = 7316.691742 C = 7430.418845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.615 5.615 3 C 0.123 3.877 4 C 0.151 3.849 5 N -0.744 5.744 6 C -0.253 4.253 7 H 0.072 0.928 8 C -0.072 4.072 9 N -0.968 5.968 10 Si 0.979 3.021 11 H -0.267 1.267 12 H -0.292 1.292 13 H -0.285 1.285 14 C 0.507 3.493 15 O -0.577 6.577 16 C -0.072 4.072 17 H 0.123 0.877 18 C -0.111 4.111 19 C -0.110 4.110 20 C -0.089 4.089 21 C -0.123 4.123 22 C -0.180 4.180 23 C -0.143 4.143 24 H 0.078 0.922 25 H 0.097 0.903 26 H 0.076 0.924 27 H 0.094 0.906 28 H 0.054 0.946 29 H -0.004 1.004 30 H 0.029 0.971 31 H 0.375 0.625 32 H 0.254 0.746 33 H 0.042 0.958 34 H 0.099 0.901 35 H 0.076 0.924 36 H 0.095 0.905 37 H 0.049 0.951 38 H 0.086 0.914 39 H 0.065 0.935 40 H 0.089 0.911 41 H 0.116 0.884 42 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.037 -22.069 -6.337 26.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.348 5.348 3 C -0.001 4.001 4 C 0.023 3.977 5 N -0.387 5.387 6 C -0.384 4.384 7 H 0.090 0.910 8 C -0.265 4.265 9 N -0.618 5.618 10 Si 0.807 3.193 11 H -0.191 1.191 12 H -0.219 1.219 13 H -0.212 1.212 14 C 0.297 3.703 15 O -0.456 6.456 16 C -0.093 4.093 17 H 0.141 0.859 18 C -0.149 4.149 19 C -0.147 4.147 20 C -0.126 4.126 21 C -0.123 4.123 22 C -0.217 4.217 23 C -0.179 4.179 24 H 0.097 0.903 25 H 0.116 0.884 26 H 0.094 0.906 27 H 0.112 0.888 28 H 0.073 0.927 29 H 0.014 0.986 30 H 0.047 0.953 31 H 0.207 0.793 32 H 0.063 0.937 33 H 0.061 0.939 34 H 0.117 0.883 35 H 0.095 0.905 36 H 0.114 0.886 37 H 0.068 0.932 38 H 0.105 0.895 39 H 0.083 0.917 40 H 0.108 0.892 41 H 0.134 0.866 42 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -13.432 -22.061 -6.101 26.539 hybrid contribution 1.076 1.314 0.484 1.766 sum -12.356 -20.747 -5.617 24.793 Atomic orbital electron populations 1.22153 0.76738 1.04775 1.03618 1.48001 1.08697 1.04858 1.73202 1.21286 0.97102 0.85590 0.96084 1.20925 0.94128 0.86696 0.95924 1.42411 1.67693 1.22957 1.05630 1.19629 1.29245 1.02660 0.86887 0.90976 1.25640 1.01476 0.98759 1.00587 1.69825 1.45864 1.19987 1.26135 0.85004 0.77212 0.78121 0.78967 1.19137 1.21883 1.21208 1.21418 0.87770 0.86231 0.74889 1.90703 1.16669 1.87740 1.50472 1.21573 0.99429 0.89461 0.98811 0.85943 1.22350 1.02660 0.96682 0.93202 1.22454 0.99270 0.94219 0.98758 1.21903 0.98667 0.95864 0.96185 1.21600 1.02102 0.97647 0.90963 1.22777 0.94506 0.99724 1.04678 1.23167 0.98123 1.02809 0.93827 0.90310 0.88439 0.90556 0.88782 0.92722 0.98567 0.95282 0.79280 0.93715 0.93940 0.88270 0.90494 0.88631 0.93206 0.89524 0.91672 0.89213 0.86587 0.87887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.20 9.85 127.77 1.26 2.45 16 2 N -0.61 -17.64 2.87 -846.76 -2.43 -20.07 16 3 C 0.12 4.51 5.50 86.38 0.47 4.98 16 4 C 0.15 6.80 6.58 86.38 0.57 7.37 16 5 N -0.74 -40.99 5.60 -343.44 -1.92 -42.91 16 6 C -0.25 -15.03 9.99 84.03 0.84 -14.19 16 7 H 0.07 4.16 7.83 -2.91 -0.02 4.14 16 8 C -0.07 -4.32 5.50 84.86 0.47 -3.85 16 9 N -0.97 -61.12 13.06 21.65 0.28 -60.84 16 10 Si 0.98 47.61 29.55 68.60 2.03 49.64 16 11 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 12 H -0.29 -14.16 7.11 99.48 0.71 -13.45 16 13 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 14 C 0.51 15.74 5.77 87.66 0.51 16.24 16 15 O -0.58 -24.06 14.58 -3.05 -0.04 -24.10 16 16 C -0.07 -1.49 2.29 -10.91 -0.02 -1.51 16 17 H 0.12 1.76 6.45 -2.39 -0.02 1.74 16 18 C -0.11 -2.03 6.25 31.72 0.20 -1.83 16 19 C -0.11 -1.53 6.91 31.93 0.22 -1.31 16 20 C -0.09 -1.58 6.58 31.57 0.21 -1.37 16 21 C -0.12 -2.54 2.06 -52.02 -0.11 -2.64 16 22 C -0.18 -4.47 8.94 30.47 0.27 -4.20 16 23 C -0.14 -2.35 10.24 30.48 0.31 -2.04 16 24 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 25 H 0.10 1.18 6.27 -2.39 -0.01 1.17 16 26 H 0.08 1.36 8.10 -2.39 -0.02 1.34 16 27 H 0.09 3.07 8.07 -2.39 -0.02 3.05 16 28 H 0.05 2.30 7.50 -2.39 -0.02 2.28 16 29 H 0.00 -0.19 8.14 -2.39 -0.02 -0.20 16 30 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.38 21.58 7.67 -92.71 -0.71 20.87 16 32 H 0.25 15.36 8.31 -92.71 -0.77 14.59 16 33 H 0.04 1.06 7.85 -2.39 -0.02 1.04 16 34 H 0.10 1.27 8.06 -2.39 -0.02 1.25 16 35 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 36 H 0.10 0.89 8.14 -2.38 -0.02 0.88 16 37 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 38 H 0.09 1.16 8.11 -2.38 -0.02 1.15 16 39 H 0.06 2.03 6.82 -2.39 -0.02 2.01 16 40 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 41 H 0.12 1.43 8.14 -2.38 -0.02 1.41 16 42 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 Total: -1.00 -76.77 337.76 3.38 -73.39 By element: Atomic # 1 Polarization: 26.52 SS G_CDS: 0.28 Total: 26.80 kcal Atomic # 6 Polarization: -7.09 SS G_CDS: 5.19 Total: -1.90 kcal Atomic # 7 Polarization: -119.75 SS G_CDS: -4.07 Total: -123.82 kcal Atomic # 8 Polarization: -24.06 SS G_CDS: -0.04 Total: -24.10 kcal Atomic # 14 Polarization: 47.61 SS G_CDS: 2.03 Total: 49.64 kcal Total: -76.77 3.38 -73.39 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714722375.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.841 kcal (2) G-P(sol) polarization free energy of solvation -76.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds