Wall clock time and date at job start Mon Mar 30 2020 00:47:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.32996 * 120.00109 * 2 1 4 4 C 1.50692 * 120.00017 * 179.97438 * 3 2 1 5 5 C 1.47100 * 119.99610 * 359.97438 * 3 2 1 6 6 O 1.21610 * 120.00284 * 34.54898 * 5 3 2 7 7 N 1.34781 * 119.99701 * 214.54553 * 5 3 2 8 8 C 1.46498 * 119.99963 * 6.69862 * 7 5 3 9 9 C 1.52997 * 109.46876 * 65.45417 * 8 7 5 10 10 C 1.46502 * 119.99997 * 186.70294 * 7 5 3 11 11 H 1.09007 * 110.88436 * 223.17861 * 10 7 5 12 12 C 1.55151 * 111.00451 * 99.29569 * 10 7 5 13 13 C 1.54319 * 102.94430 * 277.42589 * 12 10 7 14 14 N 1.47021 * 107.27199 * 337.81096 * 13 12 10 15 15 C 1.36942 * 125.65055 * 178.98466 * 14 13 12 16 16 H 1.07997 * 119.99887 * 179.97438 * 15 14 13 17 17 C 1.38816 * 119.99866 * 359.97438 * 15 14 13 18 18 N 1.31621 * 119.99729 * 359.97438 * 17 15 14 19 19 Si 1.86794 * 119.99878 * 180.02562 * 17 15 14 20 20 H 1.48493 * 109.47357 * 59.99582 * 19 17 15 21 21 H 1.48498 * 109.47053 * 180.02562 * 19 17 15 22 22 H 1.48511 * 109.47084 * 299.99358 * 19 17 15 23 23 C 1.47427 * 108.70248 * 358.93573 * 14 13 12 24 24 H 1.08998 * 109.47261 * 60.00380 * 1 2 3 25 25 H 1.08999 * 109.47084 * 300.00387 * 1 2 3 26 26 H 1.09004 * 109.47103 * 180.02562 * 1 2 3 27 27 H 1.07995 * 119.99569 * 179.97438 * 2 1 3 28 28 H 1.09008 * 109.47363 * 87.20985 * 4 3 2 29 29 H 1.08996 * 109.47235 * 207.20931 * 4 3 2 30 30 H 1.08999 * 109.47477 * 327.21096 * 4 3 2 31 31 H 1.09002 * 109.47257 * 185.45139 * 8 7 5 32 32 H 1.08998 * 109.47419 * 305.45017 * 8 7 5 33 33 H 1.08997 * 109.46905 * 299.99438 * 9 8 7 34 34 H 1.08993 * 109.47382 * 60.00065 * 9 8 7 35 35 H 1.09005 * 109.46928 * 179.97438 * 9 8 7 36 36 H 1.09004 * 110.72263 * 35.79266 * 12 10 7 37 37 H 1.09004 * 110.71986 * 159.06721 * 12 10 7 38 38 H 1.09002 * 109.88234 * 97.22627 * 13 12 10 39 39 H 1.09001 * 109.88772 * 218.39045 * 13 12 10 40 40 H 0.97005 * 119.99487 * 180.02562 * 18 17 15 41 41 H 1.08994 * 110.36669 * 265.28983 * 23 14 13 42 42 H 1.09008 * 110.36324 * 142.96726 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1720 1.1518 0.0000 4 6 3.6789 1.1517 0.0006 5 6 1.4365 2.4257 -0.0006 6 8 0.3810 2.5187 0.5963 7 7 1.9324 3.4898 -0.6625 8 6 3.1245 3.3405 -1.5009 9 6 2.8059 2.4205 -2.6811 10 6 1.2794 4.7959 -0.5436 11 1 1.2089 5.2850 -1.5152 12 6 2.0196 5.6965 0.4802 13 6 1.4485 5.2232 1.8334 14 7 0.1530 4.5838 1.5608 15 6 -0.6677 4.0124 2.4964 16 1 -1.6037 3.5668 2.1936 17 6 -0.2964 4.0059 3.8339 18 7 0.8446 4.5486 4.2028 19 14 -1.4154 3.2258 5.1101 20 1 -1.6115 1.7902 4.7852 21 1 -0.7956 3.3497 6.4538 22 1 -2.7292 3.9183 5.1058 23 6 -0.1169 4.6607 0.1135 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 2.0469 -0.9353 0.0004 28 1 4.0427 1.1015 -1.0258 29 1 4.0421 2.0657 0.4704 30 1 4.0421 0.2880 0.5574 31 1 3.4308 4.3177 -1.8743 32 1 3.9321 2.9078 -0.9105 33 1 2.4997 1.4433 -2.3076 34 1 1.9984 2.8532 -3.2715 35 1 3.6927 2.3097 -3.3051 36 1 3.0955 5.5277 0.4354 37 1 1.7856 6.7474 0.3093 38 1 2.1277 4.5041 2.2912 39 1 1.3082 6.0774 2.4958 40 1 1.1042 4.5437 5.1375 41 1 -0.7287 5.5341 -0.1124 42 1 -0.6111 3.7515 -0.2291 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715035532.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:47:51 Heat of formation + Delta-G solvation = 55.739248 kcal Electronic energy + Delta-G solvation = -22526.257632 eV Core-core repulsion = 19509.689650 eV Total energy + Delta-G solvation = -3016.567982 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.06198 -36.80228 -35.49292 -34.23866 -32.10321 -30.06641 -29.61861 -28.71153 -27.06594 -24.89594 -24.23925 -23.04678 -21.87635 -19.93644 -19.61320 -17.57286 -16.52871 -15.89253 -15.43456 -14.91348 -14.70600 -14.30307 -13.74671 -13.66587 -13.48586 -12.97569 -12.78603 -12.54584 -12.22515 -12.13179 -11.96162 -11.74322 -11.63982 -11.50534 -11.36344 -11.26324 -10.76138 -10.70032 -10.60757 -10.55923 -10.02132 -9.95448 -9.72489 -9.35146 -8.54900 -8.28123 -8.08380 -7.85843 -6.42570 -5.39213 -2.65848 1.97047 3.58066 3.59802 3.61255 3.63285 3.85873 4.77489 4.92042 5.12385 5.20532 5.32349 5.43493 5.48881 5.50498 5.64623 5.69838 5.75840 5.78101 5.79820 5.90102 5.96372 6.00581 6.07648 6.13062 6.14357 6.26369 6.31698 6.46607 6.57454 6.72720 6.78998 6.84853 6.94254 7.07128 7.44195 7.80528 7.83739 8.07961 8.13894 8.56644 9.12355 9.55276 10.16111 10.82753 11.74387 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.019547 B = 0.008581 C = 0.007002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1432.109576 B = 3262.221281 C = 3998.096438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.102 4.102 3 C -0.170 4.170 4 C -0.114 4.114 5 C 0.533 3.467 6 O -0.451 6.451 7 N -0.605 5.605 8 C 0.095 3.905 9 C -0.173 4.173 10 C 0.128 3.872 11 H 0.071 0.929 12 C -0.161 4.161 13 C 0.183 3.817 14 N -0.579 5.579 15 C -0.171 4.171 16 H 0.071 0.929 17 C -0.025 4.025 18 N -0.936 5.936 19 Si 0.904 3.096 20 H -0.290 1.290 21 H -0.295 1.295 22 H -0.290 1.290 23 C 0.137 3.863 24 H 0.061 0.939 25 H 0.096 0.904 26 H 0.048 0.952 27 H 0.113 0.887 28 H 0.071 0.929 29 H 0.069 0.931 30 H 0.059 0.941 31 H 0.072 0.928 32 H 0.082 0.918 33 H 0.063 0.937 34 H 0.055 0.945 35 H 0.060 0.940 36 H 0.056 0.944 37 H 0.062 0.938 38 H 0.038 0.962 39 H 0.038 0.962 40 H 0.245 0.755 41 H 0.007 0.993 42 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.928 -5.080 -14.236 16.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.122 4.122 3 C -0.174 4.174 4 C -0.171 4.171 5 C 0.320 3.680 6 O -0.321 6.321 7 N -0.341 5.341 8 C -0.028 4.028 9 C -0.231 4.231 10 C 0.024 3.976 11 H 0.089 0.911 12 C -0.201 4.201 13 C 0.058 3.942 14 N -0.304 5.304 15 C -0.300 4.300 16 H 0.089 0.911 17 C -0.218 4.218 18 N -0.587 5.587 19 Si 0.737 3.263 20 H -0.217 1.217 21 H -0.221 1.221 22 H -0.218 1.218 23 C 0.010 3.990 24 H 0.080 0.920 25 H 0.114 0.886 26 H 0.068 0.932 27 H 0.131 0.869 28 H 0.089 0.911 29 H 0.088 0.912 30 H 0.078 0.922 31 H 0.091 0.909 32 H 0.099 0.901 33 H 0.082 0.918 34 H 0.074 0.926 35 H 0.079 0.921 36 H 0.075 0.925 37 H 0.080 0.920 38 H 0.056 0.944 39 H 0.056 0.944 40 H 0.055 0.945 41 H 0.024 0.976 42 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 6.307 -5.066 -13.652 15.869 hybrid contribution -0.159 -0.413 0.736 0.859 sum 6.148 -5.479 -12.916 15.318 Atomic orbital electron populations 1.20980 0.92258 1.01039 1.04204 1.23283 0.96845 0.96216 0.95838 1.21584 0.95972 0.94136 1.05671 1.21046 0.91850 1.02471 1.01693 1.18320 0.86355 0.83457 0.79824 1.91035 1.20431 1.81934 1.38743 1.47524 1.29339 1.08933 1.48297 1.21810 0.88782 1.00187 0.92060 1.22310 1.01611 1.00813 0.98345 1.22291 0.95480 0.82703 0.97131 0.91083 1.23362 0.99074 0.98265 0.99350 1.21020 0.87222 0.96241 0.89692 1.44243 1.19701 1.65950 1.00458 1.18853 0.98403 1.26728 0.86032 0.91092 1.24652 0.97667 1.02626 0.96855 1.69942 1.22231 1.51580 1.14963 0.86275 0.79685 0.79144 0.81221 1.21702 1.22125 1.21753 1.21901 0.92108 0.98312 0.86649 0.92018 0.88554 0.93244 0.86873 0.91083 0.91182 0.92166 0.90921 0.90066 0.91799 0.92622 0.92133 0.92478 0.91967 0.94368 0.94405 0.94491 0.97574 0.91095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.03 8.64 36.01 0.31 -1.72 16 2 C -0.10 -1.52 9.95 -36.13 -0.36 -1.88 16 3 C -0.17 -2.73 3.90 -102.85 -0.40 -3.13 16 4 C -0.11 -1.44 7.83 36.00 0.28 -1.16 16 5 C 0.53 10.34 6.40 -12.66 -0.08 10.26 16 6 O -0.45 -10.63 7.53 5.27 0.04 -10.60 16 7 N -0.60 -10.21 2.69 -165.06 -0.44 -10.65 16 8 C 0.09 1.17 5.83 -4.04 -0.02 1.14 16 9 C -0.17 -1.81 8.95 37.16 0.33 -1.48 16 10 C 0.13 2.33 3.59 -65.78 -0.24 2.10 16 11 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 12 C -0.16 -3.11 6.64 -24.90 -0.17 -3.28 16 13 C 0.18 4.71 5.22 -3.07 -0.02 4.69 16 14 N -0.58 -15.54 2.11 -170.07 -0.36 -15.90 16 15 C -0.17 -5.08 8.72 -15.06 -0.13 -5.21 16 16 H 0.07 2.11 7.83 -52.49 -0.41 1.70 16 17 C -0.02 -0.75 5.49 -17.43 -0.10 -0.84 16 18 N -0.94 -29.34 10.31 55.49 0.57 -28.77 16 19 Si 0.90 24.01 29.55 -169.99 -5.02 18.99 16 20 H -0.29 -7.66 7.11 56.52 0.40 -7.25 16 21 H -0.30 -7.87 7.11 56.52 0.40 -7.47 16 22 H -0.29 -7.57 7.11 56.52 0.40 -7.17 16 23 C 0.14 3.05 5.91 -2.53 -0.01 3.04 16 24 H 0.06 0.98 8.08 -51.93 -0.42 0.56 16 25 H 0.10 1.90 6.72 -51.93 -0.35 1.55 16 26 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 27 H 0.11 1.35 8.06 -52.49 -0.42 0.93 16 28 H 0.07 0.71 5.81 -51.92 -0.30 0.41 16 29 H 0.07 0.97 6.75 -51.93 -0.35 0.62 16 30 H 0.06 0.70 8.09 -51.93 -0.42 0.28 16 31 H 0.07 0.80 7.93 -51.93 -0.41 0.38 16 32 H 0.08 0.95 4.09 -51.93 -0.21 0.74 16 33 H 0.06 0.73 5.57 -51.93 -0.29 0.44 16 34 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 38 H 0.04 1.11 7.38 -51.93 -0.38 0.73 16 39 H 0.04 1.08 7.51 -51.93 -0.39 0.69 16 40 H 0.24 7.55 8.31 -40.82 -0.34 7.21 16 41 H 0.01 0.15 8.14 -51.93 -0.42 -0.27 16 42 H 0.07 1.66 5.87 -52.08 -0.31 1.36 16 LS Contribution 315.57 15.07 4.76 4.76 Total: -1.00 -33.99 315.57 -7.82 -41.80 By element: Atomic # 1 Polarization: 4.61 SS G_CDS: -6.76 Total: -2.15 kcal Atomic # 6 Polarization: 3.12 SS G_CDS: -0.60 Total: 2.52 kcal Atomic # 7 Polarization: -55.09 SS G_CDS: -0.23 Total: -55.32 kcal Atomic # 8 Polarization: -10.63 SS G_CDS: 0.04 Total: -10.60 kcal Atomic # 14 Polarization: 24.01 SS G_CDS: -5.02 Total: 18.99 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -33.99 -7.82 -41.80 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715035532.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.544 kcal (2) G-P(sol) polarization free energy of solvation -33.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.805 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds