Wall clock time and date at job start Mon Mar 30 2020 00:47:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.32996 * 120.00109 * 2 1 4 4 C 1.50692 * 120.00017 * 179.97438 * 3 2 1 5 5 C 1.47100 * 119.99610 * 359.97438 * 3 2 1 6 6 O 1.21610 * 120.00284 * 34.54898 * 5 3 2 7 7 N 1.34781 * 119.99701 * 214.54553 * 5 3 2 8 8 C 1.46498 * 119.99963 * 6.69862 * 7 5 3 9 9 C 1.52997 * 109.46876 * 65.45417 * 8 7 5 10 10 C 1.46502 * 119.99997 * 186.70294 * 7 5 3 11 11 H 1.09007 * 110.88436 * 223.17861 * 10 7 5 12 12 C 1.55151 * 111.00451 * 99.29569 * 10 7 5 13 13 C 1.54319 * 102.94430 * 277.42589 * 12 10 7 14 14 N 1.47021 * 107.27199 * 337.81096 * 13 12 10 15 15 C 1.36942 * 125.65055 * 178.98466 * 14 13 12 16 16 H 1.07997 * 119.99887 * 179.97438 * 15 14 13 17 17 C 1.38816 * 119.99866 * 359.97438 * 15 14 13 18 18 N 1.31621 * 119.99729 * 359.97438 * 17 15 14 19 19 Si 1.86794 * 119.99878 * 180.02562 * 17 15 14 20 20 H 1.48493 * 109.47357 * 59.99582 * 19 17 15 21 21 H 1.48498 * 109.47053 * 180.02562 * 19 17 15 22 22 H 1.48511 * 109.47084 * 299.99358 * 19 17 15 23 23 C 1.47427 * 108.70248 * 358.93573 * 14 13 12 24 24 H 1.08998 * 109.47261 * 60.00380 * 1 2 3 25 25 H 1.08999 * 109.47084 * 300.00387 * 1 2 3 26 26 H 1.09004 * 109.47103 * 180.02562 * 1 2 3 27 27 H 1.07995 * 119.99569 * 179.97438 * 2 1 3 28 28 H 1.09008 * 109.47363 * 87.20985 * 4 3 2 29 29 H 1.08996 * 109.47235 * 207.20931 * 4 3 2 30 30 H 1.08999 * 109.47477 * 327.21096 * 4 3 2 31 31 H 1.09002 * 109.47257 * 185.45139 * 8 7 5 32 32 H 1.08998 * 109.47419 * 305.45017 * 8 7 5 33 33 H 1.08997 * 109.46905 * 299.99438 * 9 8 7 34 34 H 1.08993 * 109.47382 * 60.00065 * 9 8 7 35 35 H 1.09005 * 109.46928 * 179.97438 * 9 8 7 36 36 H 1.09004 * 110.72263 * 35.79266 * 12 10 7 37 37 H 1.09004 * 110.71986 * 159.06721 * 12 10 7 38 38 H 1.09002 * 109.88234 * 97.22627 * 13 12 10 39 39 H 1.09001 * 109.88772 * 218.39045 * 13 12 10 40 40 H 0.97005 * 119.99487 * 180.02562 * 18 17 15 41 41 H 1.08994 * 110.36669 * 265.28983 * 23 14 13 42 42 H 1.09008 * 110.36324 * 142.96726 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1720 1.1518 0.0000 4 6 3.6789 1.1517 0.0006 5 6 1.4365 2.4257 -0.0006 6 8 0.3810 2.5187 0.5963 7 7 1.9324 3.4898 -0.6625 8 6 3.1245 3.3405 -1.5009 9 6 2.8059 2.4205 -2.6811 10 6 1.2794 4.7959 -0.5436 11 1 1.2089 5.2850 -1.5152 12 6 2.0196 5.6965 0.4802 13 6 1.4485 5.2232 1.8334 14 7 0.1530 4.5838 1.5608 15 6 -0.6677 4.0124 2.4964 16 1 -1.6037 3.5668 2.1936 17 6 -0.2964 4.0059 3.8339 18 7 0.8446 4.5486 4.2028 19 14 -1.4154 3.2258 5.1101 20 1 -1.6115 1.7902 4.7852 21 1 -0.7956 3.3497 6.4538 22 1 -2.7292 3.9183 5.1058 23 6 -0.1169 4.6607 0.1135 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 2.0469 -0.9353 0.0004 28 1 4.0427 1.1015 -1.0258 29 1 4.0421 2.0657 0.4704 30 1 4.0421 0.2880 0.5574 31 1 3.4308 4.3177 -1.8743 32 1 3.9321 2.9078 -0.9105 33 1 2.4997 1.4433 -2.3076 34 1 1.9984 2.8532 -3.2715 35 1 3.6927 2.3097 -3.3051 36 1 3.0955 5.5277 0.4354 37 1 1.7856 6.7474 0.3093 38 1 2.1277 4.5041 2.2912 39 1 1.3082 6.0774 2.4958 40 1 1.1042 4.5437 5.1375 41 1 -0.7287 5.5341 -0.1124 42 1 -0.6111 3.7515 -0.2291 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715035532.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:47:50 Heat of formation + Delta-G solvation = 34.417653 kcal Electronic energy + Delta-G solvation = -22527.182206 eV Core-core repulsion = 19509.689650 eV Total energy + Delta-G solvation = -3017.492556 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.49492 -38.46329 -36.83197 -35.69736 -34.04719 -31.60479 -30.74030 -30.45804 -28.79838 -26.54428 -25.80362 -24.28107 -23.18501 -21.84593 -21.18892 -19.02898 -18.52505 -17.34000 -16.77316 -16.59635 -16.16657 -15.80800 -15.65559 -15.00704 -14.83994 -14.50021 -14.02892 -13.86401 -13.73527 -13.56281 -13.38521 -13.20415 -13.06476 -12.85340 -12.82633 -12.62650 -12.54783 -12.43610 -12.17829 -12.04323 -11.88960 -11.70017 -11.58676 -11.36548 -10.56907 -9.74937 -9.61239 -9.24973 -8.60354 -7.69970 -4.96544 0.73618 1.39714 1.44383 1.49783 2.32514 2.47560 2.57885 3.47519 3.68532 3.85301 4.02407 4.06737 4.18831 4.21996 4.37779 4.41042 4.50978 4.57966 4.64608 4.71235 4.78756 4.85107 4.86253 4.89567 4.93957 5.04791 5.08453 5.11221 5.19147 5.26785 5.29038 5.47957 5.54698 5.63226 5.72357 5.76925 5.83161 6.02887 6.34977 6.80599 7.27132 7.71470 7.97432 8.60917 9.41676 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.019547 B = 0.008581 C = 0.007002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1432.109576 B = 3262.221281 C = 3998.096438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.099 4.099 3 C -0.186 4.186 4 C -0.107 4.107 5 C 0.520 3.480 6 O -0.509 6.509 7 N -0.605 5.605 8 C 0.087 3.913 9 C -0.165 4.165 10 C 0.140 3.860 11 H 0.117 0.883 12 C -0.143 4.143 13 C 0.194 3.806 14 N -0.593 5.593 15 C -0.171 4.171 16 H 0.061 0.939 17 C -0.086 4.086 18 N -0.962 5.962 19 Si 0.965 3.035 20 H -0.289 1.289 21 H -0.296 1.296 22 H -0.280 1.280 23 C 0.132 3.868 24 H 0.054 0.946 25 H 0.049 0.951 26 H 0.075 0.925 27 H 0.151 0.849 28 H 0.103 0.897 29 H 0.055 0.945 30 H 0.073 0.927 31 H 0.095 0.905 32 H 0.090 0.910 33 H 0.053 0.947 34 H 0.049 0.951 35 H 0.091 0.909 36 H 0.079 0.921 37 H 0.084 0.916 38 H -0.007 1.007 39 H -0.003 1.003 40 H 0.237 0.763 41 H 0.011 0.989 42 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.521 -5.800 -16.758 19.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.118 4.118 3 C -0.190 4.190 4 C -0.163 4.163 5 C 0.309 3.691 6 O -0.384 6.384 7 N -0.339 5.339 8 C -0.034 4.034 9 C -0.223 4.223 10 C 0.035 3.965 11 H 0.134 0.866 12 C -0.183 4.183 13 C 0.069 3.931 14 N -0.317 5.317 15 C -0.301 4.301 16 H 0.079 0.921 17 C -0.276 4.276 18 N -0.615 5.615 19 Si 0.796 3.204 20 H -0.216 1.216 21 H -0.222 1.222 22 H -0.207 1.207 23 C 0.006 3.994 24 H 0.073 0.927 25 H 0.068 0.932 26 H 0.094 0.906 27 H 0.168 0.832 28 H 0.121 0.879 29 H 0.073 0.927 30 H 0.091 0.909 31 H 0.113 0.887 32 H 0.108 0.892 33 H 0.072 0.928 34 H 0.068 0.932 35 H 0.110 0.890 36 H 0.098 0.902 37 H 0.102 0.898 38 H 0.011 0.989 39 H 0.015 0.985 40 H 0.046 0.954 41 H 0.029 0.971 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 7.922 -5.777 -16.243 18.973 hybrid contribution -0.691 -0.212 1.435 1.607 sum 7.232 -5.989 -14.808 17.534 Atomic orbital electron populations 1.20851 0.93578 1.01834 1.01637 1.23579 0.96122 0.97478 0.94579 1.21752 0.97789 0.92812 1.06598 1.21049 0.89160 1.02306 1.03758 1.19017 0.85977 0.85087 0.79022 1.91014 1.22940 1.83140 1.41276 1.47703 1.30325 1.07747 1.48175 1.22160 0.86968 1.02172 0.92129 1.22239 1.02828 0.99548 0.97679 1.22225 0.92355 0.83562 0.98334 0.86550 1.23217 1.00090 0.99554 0.95417 1.20718 0.86324 0.93419 0.92628 1.44433 1.19683 1.65443 1.02144 1.19029 0.98406 1.25706 0.86994 0.92137 1.25383 0.99360 1.04100 0.98721 1.70181 1.23755 1.53132 1.14481 0.85309 0.78312 0.78183 0.78621 1.21602 1.22198 1.20683 1.21996 0.95099 0.97644 0.84619 0.92699 0.93194 0.90576 0.83187 0.87895 0.92658 0.90855 0.88677 0.89173 0.92828 0.93190 0.88998 0.90237 0.89751 0.98859 0.98465 0.95413 0.97104 0.92464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.89 8.64 71.24 0.62 -3.28 16 2 C -0.10 -2.77 9.95 24.52 0.24 -2.53 16 3 C -0.19 -5.73 3.90 -18.71 -0.07 -5.80 16 4 C -0.11 -2.40 7.83 71.23 0.56 -1.84 16 5 C 0.52 20.13 6.40 86.57 0.55 20.69 16 6 O -0.51 -24.95 7.53 -4.06 -0.03 -24.98 16 7 N -0.60 -19.30 2.69 -794.37 -2.13 -21.44 16 8 C 0.09 1.81 5.83 86.38 0.50 2.31 16 9 C -0.17 -2.79 8.95 71.98 0.64 -2.15 16 10 C 0.14 4.79 3.59 46.38 0.17 4.95 16 11 H 0.12 3.04 8.14 -2.38 -0.02 3.02 16 12 C -0.14 -5.30 6.64 31.78 0.21 -5.09 16 13 C 0.19 10.31 5.22 86.73 0.45 10.77 16 14 N -0.59 -32.96 2.11 -691.98 -1.46 -34.41 16 15 C -0.17 -10.62 8.72 84.03 0.73 -9.88 16 16 H 0.06 3.78 7.83 -2.91 -0.02 3.76 16 17 C -0.09 -5.39 5.49 84.86 0.47 -4.92 16 18 N -0.96 -63.14 10.31 21.65 0.22 -62.92 16 19 Si 0.97 51.28 29.55 68.60 2.03 53.31 16 20 H -0.29 -15.15 7.11 99.48 0.71 -14.44 16 21 H -0.30 -15.61 7.11 99.48 0.71 -14.90 16 22 H -0.28 -14.29 7.11 99.48 0.71 -13.58 16 23 C 0.13 5.92 5.91 86.85 0.51 6.43 16 24 H 0.05 1.77 8.08 -2.39 -0.02 1.75 16 25 H 0.05 2.08 6.72 -2.39 -0.02 2.06 16 26 H 0.08 1.93 8.14 -2.38 -0.02 1.91 16 27 H 0.15 3.07 8.06 -2.91 -0.02 3.04 16 28 H 0.10 1.62 5.81 -2.38 -0.01 1.61 16 29 H 0.05 1.42 6.75 -2.39 -0.02 1.40 16 30 H 0.07 1.47 8.09 -2.39 -0.02 1.45 16 31 H 0.09 1.59 7.93 -2.39 -0.02 1.57 16 32 H 0.09 1.77 4.09 -2.39 -0.01 1.76 16 33 H 0.05 1.04 5.57 -2.39 -0.01 1.02 16 34 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 35 H 0.09 1.01 8.14 -2.38 -0.02 0.99 16 36 H 0.08 2.60 8.14 -2.39 -0.02 2.58 16 37 H 0.08 2.78 8.14 -2.38 -0.02 2.76 16 38 H -0.01 -0.42 7.38 -2.39 -0.02 -0.44 16 39 H 0.00 -0.17 7.51 -2.39 -0.02 -0.19 16 40 H 0.24 15.25 8.31 -92.70 -0.77 14.48 16 41 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 42 H 0.06 2.77 5.87 -4.85 -0.03 2.74 16 Total: -1.00 -80.24 315.57 5.19 -75.05 By element: Atomic # 1 Polarization: 4.76 SS G_CDS: 0.98 Total: 5.74 kcal Atomic # 6 Polarization: 4.07 SS G_CDS: 5.59 Total: 9.66 kcal Atomic # 7 Polarization: -115.40 SS G_CDS: -3.37 Total: -118.77 kcal Atomic # 8 Polarization: -24.95 SS G_CDS: -0.03 Total: -24.98 kcal Atomic # 14 Polarization: 51.28 SS G_CDS: 2.03 Total: 53.31 kcal Total: -80.24 5.19 -75.05 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715035532.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.465 kcal (2) G-P(sol) polarization free energy of solvation -80.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.048 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds