Wall clock time and date at job start Mon Mar 30 2020 00:47:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.32994 * 120.00496 * 2 1 4 4 C 1.50701 * 119.99509 * 359.97438 * 3 2 1 5 5 C 1.47094 * 120.00331 * 179.97438 * 3 2 1 6 6 O 1.21613 * 119.99964 * 44.10740 * 5 3 2 7 7 N 1.34780 * 120.00120 * 224.10690 * 5 3 2 8 8 C 1.46503 * 119.99706 * 3.87287 * 7 5 3 9 9 C 1.53007 * 109.46606 * 247.72426 * 8 7 5 10 10 C 1.46493 * 120.00150 * 183.86505 * 7 5 3 11 11 H 1.08998 * 110.91705 * 190.29442 * 10 7 5 12 12 C 1.55163 * 111.00309 * 66.39574 * 10 7 5 13 13 C 1.54324 * 102.93873 * 277.42648 * 12 10 7 14 14 N 1.47016 * 107.27413 * 337.80242 * 13 12 10 15 15 C 1.36941 * 125.64736 * 178.97331 * 14 13 12 16 16 H 1.08000 * 119.99647 * 175.29561 * 15 14 13 17 17 C 1.38808 * 119.99803 * 355.29236 * 15 14 13 18 18 N 1.31615 * 120.00557 * 5.42962 * 17 15 14 19 19 Si 1.86806 * 119.99465 * 185.42514 * 17 15 14 20 20 H 1.48493 * 109.47032 * 95.00230 * 19 17 15 21 21 H 1.48501 * 109.46898 * 214.99791 * 19 17 15 22 22 H 1.48495 * 109.47328 * 334.99656 * 19 17 15 23 23 C 1.47428 * 108.70458 * 358.94654 * 14 13 12 24 24 H 1.09003 * 109.47294 * 300.00667 * 1 2 3 25 25 H 1.09000 * 109.46636 * 60.00260 * 1 2 3 26 26 H 1.09003 * 109.47007 * 180.02562 * 1 2 3 27 27 H 1.08004 * 119.99912 * 179.97438 * 2 1 3 28 28 H 1.09005 * 109.46914 * 272.79608 * 4 3 2 29 29 H 1.09000 * 109.47464 * 32.79275 * 4 3 2 30 30 H 1.09000 * 109.47146 * 152.79498 * 4 3 2 31 31 H 1.09002 * 109.47202 * 7.71886 * 8 7 5 32 32 H 1.08995 * 109.47684 * 127.72608 * 8 7 5 33 33 H 1.09002 * 109.46899 * 299.99646 * 9 8 7 34 34 H 1.08995 * 109.47475 * 59.99736 * 9 8 7 35 35 H 1.09002 * 109.47004 * 180.02562 * 9 8 7 36 36 H 1.09001 * 110.71814 * 159.06104 * 12 10 7 37 37 H 1.08998 * 110.71961 * 35.78841 * 12 10 7 38 38 H 1.09001 * 109.87890 * 97.22740 * 13 12 10 39 39 H 1.09005 * 109.87756 * 218.38733 * 13 12 10 40 40 H 0.96996 * 120.00208 * 179.97438 * 18 17 15 41 41 H 1.08992 * 110.36803 * 142.96186 * 23 14 13 42 42 H 1.08998 * 110.36484 * 265.18077 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1721 1.1517 0.0000 4 6 1.4186 2.4568 -0.0006 5 6 3.6430 1.1517 0.0006 6 8 4.2513 0.3952 -0.7321 7 7 4.3166 1.9899 0.8130 8 6 3.5862 2.8405 1.7561 9 6 3.7273 4.3051 1.3365 10 6 5.7791 2.0504 0.7532 11 1 6.1789 2.6313 1.5843 12 6 6.2568 2.6243 -0.6070 13 6 6.2119 1.3931 -1.5364 14 7 6.2818 0.1986 -0.6822 15 6 6.2495 -1.0985 -1.1200 16 1 6.3835 -1.9087 -0.4185 17 6 6.0445 -1.3721 -2.4653 18 7 5.9879 -0.3868 -3.3361 19 14 5.8491 -3.1388 -3.0399 20 1 4.4054 -3.4779 -3.1154 21 1 6.4647 -3.2936 -4.3824 22 1 6.5219 -4.0492 -2.0789 23 6 6.3930 0.6285 0.7236 24 1 -0.3634 0.5139 0.8899 25 1 -0.3632 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 2.0470 -0.9354 0.0004 28 1 1.1939 2.7462 -1.0272 29 1 0.4885 2.3397 0.5557 30 1 2.0282 3.2286 0.4693 31 1 2.5323 2.5622 1.7553 32 1 3.9962 2.7083 2.7573 33 1 4.7812 4.5834 1.3373 34 1 3.3174 4.4374 0.3353 35 1 3.1843 4.9380 2.0384 36 1 7.2729 3.0105 -0.5271 37 1 5.5754 3.3986 -0.9595 38 1 5.2806 1.3901 -2.1028 39 1 7.0626 1.4119 -2.2177 40 1 5.8450 -0.5780 -4.2763 41 1 5.8282 -0.0421 1.3711 42 1 7.4387 0.6586 1.0295 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715035533.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:47:54 Heat of formation + Delta-G solvation = 67.881793 kcal Electronic energy + Delta-G solvation = -22402.684443 eV Core-core repulsion = 19386.643001 eV Total energy + Delta-G solvation = -3016.041442 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.87003 -36.66755 -35.38028 -34.48836 -32.06458 -30.00803 -29.17607 -28.73938 -26.94858 -25.68367 -24.22856 -22.87508 -21.73504 -19.76511 -19.01160 -17.38960 -16.53754 -16.25180 -15.66452 -14.97768 -14.40639 -14.29049 -14.09402 -13.56562 -13.43680 -13.21049 -12.80105 -12.47732 -12.35436 -11.99794 -11.72640 -11.67973 -11.61786 -11.50325 -11.20307 -10.94702 -10.88111 -10.65186 -10.64568 -10.51915 -9.87583 -9.79676 -9.59803 -9.34569 -8.64999 -8.49109 -8.15321 -7.67625 -6.12767 -5.34031 -2.56633 2.11457 3.58781 3.63354 3.64777 3.66338 3.95219 4.80161 4.99629 5.09039 5.28436 5.32392 5.43467 5.45364 5.51875 5.56246 5.63490 5.69496 5.78779 5.81224 5.84939 5.91346 5.96342 6.00343 6.03620 6.11604 6.20993 6.33915 6.36229 6.63954 6.70079 6.73654 6.82141 6.89840 7.02750 7.47104 7.83970 7.99406 8.18828 8.26880 8.64734 9.36225 9.59570 10.22651 10.89684 11.79896 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.017883 B = 0.008816 C = 0.006609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1565.337820 B = 3175.127072 C = 4235.915924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.116 4.116 3 C -0.165 4.165 4 C -0.135 4.135 5 C 0.493 3.507 6 O -0.397 6.397 7 N -0.610 5.610 8 C 0.098 3.902 9 C -0.172 4.172 10 C 0.135 3.865 11 H 0.078 0.922 12 C -0.159 4.159 13 C 0.192 3.808 14 N -0.565 5.565 15 C -0.190 4.190 16 H 0.066 0.934 17 C -0.004 4.004 18 N -0.918 5.918 19 Si 0.895 3.105 20 H -0.295 1.295 21 H -0.296 1.296 22 H -0.286 1.286 23 C 0.130 3.870 24 H 0.065 0.935 25 H 0.066 0.934 26 H 0.060 0.940 27 H 0.118 0.882 28 H 0.064 0.936 29 H 0.063 0.937 30 H 0.084 0.916 31 H 0.092 0.908 32 H 0.058 0.942 33 H 0.059 0.941 34 H 0.061 0.939 35 H 0.059 0.941 36 H 0.058 0.942 37 H 0.056 0.944 38 H 0.059 0.941 39 H 0.025 0.975 40 H 0.243 0.757 41 H 0.033 0.967 42 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.976 9.551 11.008 17.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.135 4.135 3 C -0.168 4.168 4 C -0.192 4.192 5 C 0.278 3.722 6 O -0.262 6.262 7 N -0.348 5.348 8 C -0.026 4.026 9 C -0.231 4.231 10 C 0.030 3.970 11 H 0.096 0.904 12 C -0.199 4.199 13 C 0.067 3.933 14 N -0.290 5.290 15 C -0.319 4.319 16 H 0.083 0.917 17 C -0.199 4.199 18 N -0.568 5.568 19 Si 0.728 3.272 20 H -0.223 1.223 21 H -0.223 1.223 22 H -0.212 1.212 23 C 0.002 3.998 24 H 0.084 0.916 25 H 0.084 0.916 26 H 0.079 0.921 27 H 0.136 0.864 28 H 0.083 0.917 29 H 0.082 0.918 30 H 0.103 0.897 31 H 0.110 0.890 32 H 0.077 0.923 33 H 0.078 0.922 34 H 0.080 0.920 35 H 0.078 0.922 36 H 0.077 0.923 37 H 0.074 0.926 38 H 0.077 0.923 39 H 0.044 0.956 40 H 0.053 0.947 41 H 0.051 0.949 42 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges -8.641 8.958 10.353 16.190 hybrid contribution -0.289 -0.815 -0.312 0.919 sum -8.930 8.144 10.041 15.713 Atomic orbital electron populations 1.20847 0.93026 1.02178 1.01638 1.23242 0.95527 0.97793 0.96917 1.21650 0.94443 0.95806 1.04891 1.21357 0.99794 0.95608 1.02398 1.18790 0.86966 0.83145 0.83330 1.91683 1.65417 1.34253 1.34830 1.47778 1.05552 1.41927 1.39541 1.21736 0.98230 0.90094 0.92519 1.22281 1.02432 0.96602 1.01755 1.22195 0.79479 0.98212 0.97077 0.90405 1.23376 0.99255 1.00213 0.97026 1.21077 1.00414 0.81420 0.90368 1.44080 1.84343 1.02050 0.98513 1.18768 1.39639 0.81805 0.91717 0.91655 1.24564 1.03121 0.96169 0.96063 1.69946 1.57488 1.28511 1.00845 0.86325 0.77509 0.85658 0.77718 1.22310 1.22332 1.21213 1.21752 0.95991 0.92243 0.89766 0.91608 0.91567 0.92091 0.86436 0.91701 0.91836 0.89719 0.89013 0.92321 0.92210 0.92042 0.92229 0.92293 0.92553 0.92325 0.95649 0.94663 0.94891 0.96259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.42 8.95 36.01 0.32 -1.09 16 2 C -0.12 -1.86 9.84 -36.13 -0.36 -2.21 16 3 C -0.16 -2.73 5.03 -102.85 -0.52 -3.25 16 4 C -0.14 -1.69 8.38 36.01 0.30 -1.39 16 5 C 0.49 10.04 6.71 -12.67 -0.09 9.95 16 6 O -0.40 -10.30 8.78 5.27 0.05 -10.25 16 7 N -0.61 -10.41 2.64 -165.05 -0.44 -10.85 16 8 C 0.10 1.20 5.57 -4.04 -0.02 1.18 16 9 C -0.17 -1.80 9.24 37.16 0.34 -1.46 16 10 C 0.13 2.45 3.32 -65.78 -0.22 2.23 16 11 H 0.08 1.16 8.01 -51.93 -0.42 0.75 16 12 C -0.16 -3.17 6.52 -24.89 -0.16 -3.33 16 13 C 0.19 5.01 4.22 -3.07 -0.01 5.00 16 14 N -0.56 -15.27 1.73 -170.08 -0.29 -15.56 16 15 C -0.19 -5.69 8.80 -15.06 -0.13 -5.83 16 16 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 17 C 0.00 -0.12 5.38 -17.43 -0.09 -0.22 16 18 N -0.92 -29.02 10.34 55.49 0.57 -28.45 16 19 Si 0.90 23.98 29.56 -169.99 -5.02 18.95 16 20 H -0.30 -7.98 7.11 56.52 0.40 -7.58 16 21 H -0.30 -7.96 7.11 56.52 0.40 -7.56 16 22 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 23 C 0.13 2.88 6.19 -2.53 -0.02 2.87 16 24 H 0.07 0.65 7.40 -51.93 -0.38 0.26 16 25 H 0.07 0.75 8.10 -51.93 -0.42 0.33 16 26 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.12 2.18 8.03 -52.48 -0.42 1.76 16 28 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 29 H 0.06 0.64 6.60 -51.93 -0.34 0.30 16 30 H 0.08 0.97 2.84 -51.93 -0.15 0.82 16 31 H 0.09 1.05 4.51 -51.93 -0.23 0.81 16 32 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.06 0.65 7.87 -51.93 -0.41 0.24 16 34 H 0.06 0.70 6.94 -51.93 -0.36 0.34 16 35 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 37 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 38 H 0.06 1.74 5.71 -51.93 -0.30 1.45 16 39 H 0.03 0.74 7.62 -51.93 -0.40 0.35 16 40 H 0.24 7.54 8.31 -40.82 -0.34 7.20 16 41 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 LS Contribution 317.44 15.07 4.78 4.78 Total: -1.00 -34.66 317.44 -7.76 -42.42 By element: Atomic # 1 Polarization: 3.27 SS G_CDS: -6.76 Total: -3.49 kcal Atomic # 6 Polarization: 3.09 SS G_CDS: -0.65 Total: 2.45 kcal Atomic # 7 Polarization: -54.70 SS G_CDS: -0.16 Total: -54.86 kcal Atomic # 8 Polarization: -10.30 SS G_CDS: 0.05 Total: -10.25 kcal Atomic # 14 Polarization: 23.98 SS G_CDS: -5.02 Total: 18.95 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -34.66 -7.76 -42.42 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715035533.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.299 kcal (2) G-P(sol) polarization free energy of solvation -34.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.417 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds