Wall clock time and date at job start Mon Mar 30 2020 00:47:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.32994 * 120.00496 * 2 1 4 4 C 1.50701 * 119.99509 * 359.97438 * 3 2 1 5 5 C 1.47094 * 120.00331 * 179.97438 * 3 2 1 6 6 O 1.21613 * 119.99964 * 44.10740 * 5 3 2 7 7 N 1.34780 * 120.00120 * 224.10690 * 5 3 2 8 8 C 1.46503 * 119.99706 * 3.87287 * 7 5 3 9 9 C 1.53007 * 109.46606 * 247.72426 * 8 7 5 10 10 C 1.46493 * 120.00150 * 183.86505 * 7 5 3 11 11 H 1.08998 * 110.91705 * 190.29442 * 10 7 5 12 12 C 1.55163 * 111.00309 * 66.39574 * 10 7 5 13 13 C 1.54324 * 102.93873 * 277.42648 * 12 10 7 14 14 N 1.47016 * 107.27413 * 337.80242 * 13 12 10 15 15 C 1.36941 * 125.64736 * 178.97331 * 14 13 12 16 16 H 1.08000 * 119.99647 * 175.29561 * 15 14 13 17 17 C 1.38808 * 119.99803 * 355.29236 * 15 14 13 18 18 N 1.31615 * 120.00557 * 5.42962 * 17 15 14 19 19 Si 1.86806 * 119.99465 * 185.42514 * 17 15 14 20 20 H 1.48493 * 109.47032 * 95.00230 * 19 17 15 21 21 H 1.48501 * 109.46898 * 214.99791 * 19 17 15 22 22 H 1.48495 * 109.47328 * 334.99656 * 19 17 15 23 23 C 1.47428 * 108.70458 * 358.94654 * 14 13 12 24 24 H 1.09003 * 109.47294 * 300.00667 * 1 2 3 25 25 H 1.09000 * 109.46636 * 60.00260 * 1 2 3 26 26 H 1.09003 * 109.47007 * 180.02562 * 1 2 3 27 27 H 1.08004 * 119.99912 * 179.97438 * 2 1 3 28 28 H 1.09005 * 109.46914 * 272.79608 * 4 3 2 29 29 H 1.09000 * 109.47464 * 32.79275 * 4 3 2 30 30 H 1.09000 * 109.47146 * 152.79498 * 4 3 2 31 31 H 1.09002 * 109.47202 * 7.71886 * 8 7 5 32 32 H 1.08995 * 109.47684 * 127.72608 * 8 7 5 33 33 H 1.09002 * 109.46899 * 299.99646 * 9 8 7 34 34 H 1.08995 * 109.47475 * 59.99736 * 9 8 7 35 35 H 1.09002 * 109.47004 * 180.02562 * 9 8 7 36 36 H 1.09001 * 110.71814 * 159.06104 * 12 10 7 37 37 H 1.08998 * 110.71961 * 35.78841 * 12 10 7 38 38 H 1.09001 * 109.87890 * 97.22740 * 13 12 10 39 39 H 1.09005 * 109.87756 * 218.38733 * 13 12 10 40 40 H 0.96996 * 120.00208 * 179.97438 * 18 17 15 41 41 H 1.08992 * 110.36803 * 142.96186 * 23 14 13 42 42 H 1.08998 * 110.36484 * 265.18077 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1721 1.1517 0.0000 4 6 1.4186 2.4568 -0.0006 5 6 3.6430 1.1517 0.0006 6 8 4.2513 0.3952 -0.7321 7 7 4.3166 1.9899 0.8130 8 6 3.5862 2.8405 1.7561 9 6 3.7273 4.3051 1.3365 10 6 5.7791 2.0504 0.7532 11 1 6.1789 2.6313 1.5843 12 6 6.2568 2.6243 -0.6070 13 6 6.2119 1.3931 -1.5364 14 7 6.2818 0.1986 -0.6822 15 6 6.2495 -1.0985 -1.1200 16 1 6.3835 -1.9087 -0.4185 17 6 6.0445 -1.3721 -2.4653 18 7 5.9879 -0.3868 -3.3361 19 14 5.8491 -3.1388 -3.0399 20 1 4.4054 -3.4779 -3.1154 21 1 6.4647 -3.2936 -4.3824 22 1 6.5219 -4.0492 -2.0789 23 6 6.3930 0.6285 0.7236 24 1 -0.3634 0.5139 0.8899 25 1 -0.3632 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 2.0470 -0.9354 0.0004 28 1 1.1939 2.7462 -1.0272 29 1 0.4885 2.3397 0.5557 30 1 2.0282 3.2286 0.4693 31 1 2.5323 2.5622 1.7553 32 1 3.9962 2.7083 2.7573 33 1 4.7812 4.5834 1.3373 34 1 3.3174 4.4374 0.3353 35 1 3.1843 4.9380 2.0384 36 1 7.2729 3.0105 -0.5271 37 1 5.5754 3.3986 -0.9595 38 1 5.2806 1.3901 -2.1028 39 1 7.0626 1.4119 -2.2177 40 1 5.8450 -0.5780 -4.2763 41 1 5.8282 -0.0421 1.3711 42 1 7.4387 0.6586 1.0295 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715035533.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:47:53 Heat of formation + Delta-G solvation = 45.809449 kcal Electronic energy + Delta-G solvation = -22403.641572 eV Core-core repulsion = 19386.643001 eV Total energy + Delta-G solvation = -3016.998571 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.37285 -38.28890 -36.80094 -35.93054 -34.03355 -31.46822 -30.67629 -30.13916 -28.67577 -26.80836 -26.32430 -23.96746 -23.17450 -21.80588 -20.44521 -18.93115 -18.42425 -17.61814 -17.12375 -16.62676 -16.29423 -15.82999 -15.58510 -15.25851 -14.60690 -14.38178 -14.09017 -13.70188 -13.64750 -13.44753 -13.34210 -13.18669 -13.07603 -12.84366 -12.75217 -12.63325 -12.22898 -12.22022 -12.12256 -11.97885 -11.89632 -11.66843 -11.39654 -11.34667 -10.53197 -10.09725 -9.78436 -9.22016 -8.24895 -7.64549 -4.85377 0.81826 1.38733 1.42721 1.49200 2.33374 2.49368 2.59333 3.54291 3.77061 3.88088 4.02945 4.11756 4.19691 4.24759 4.38209 4.40387 4.50272 4.54582 4.63311 4.72562 4.76555 4.85803 4.89276 4.95094 4.96704 5.03778 5.06589 5.09001 5.12061 5.16577 5.21802 5.50445 5.52526 5.58159 5.81957 5.85398 6.03236 6.09694 6.41975 6.85727 7.32753 7.87119 8.04521 8.69029 9.48234 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.017883 B = 0.008816 C = 0.006609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1565.337820 B = 3175.127072 C = 4235.915924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.121 4.121 3 C -0.177 4.177 4 C -0.126 4.126 5 C 0.482 3.518 6 O -0.470 6.470 7 N -0.606 5.606 8 C 0.091 3.909 9 C -0.167 4.167 10 C 0.148 3.852 11 H 0.129 0.871 12 C -0.143 4.143 13 C 0.205 3.795 14 N -0.578 5.578 15 C -0.191 4.191 16 H 0.060 0.940 17 C -0.064 4.064 18 N -0.946 5.946 19 Si 0.955 3.045 20 H -0.301 1.301 21 H -0.297 1.297 22 H -0.272 1.272 23 C 0.123 3.877 24 H 0.096 0.904 25 H 0.074 0.926 26 H 0.066 0.934 27 H 0.077 0.923 28 H 0.059 0.941 29 H 0.095 0.905 30 H 0.097 0.903 31 H 0.102 0.898 32 H 0.081 0.919 33 H 0.058 0.942 34 H 0.049 0.951 35 H 0.091 0.909 36 H 0.081 0.919 37 H 0.068 0.932 38 H 0.016 0.984 39 H -0.021 1.021 40 H 0.233 0.767 41 H 0.020 0.980 42 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.458 11.597 13.739 20.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.140 4.140 3 C -0.180 4.180 4 C -0.182 4.182 5 C 0.269 3.731 6 O -0.340 6.340 7 N -0.342 5.342 8 C -0.031 4.031 9 C -0.225 4.225 10 C 0.043 3.957 11 H 0.147 0.853 12 C -0.182 4.182 13 C 0.080 3.920 14 N -0.302 5.302 15 C -0.322 4.322 16 H 0.078 0.922 17 C -0.256 4.256 18 N -0.598 5.598 19 Si 0.786 3.214 20 H -0.230 1.230 21 H -0.224 1.224 22 H -0.197 1.197 23 C -0.003 4.003 24 H 0.114 0.886 25 H 0.093 0.907 26 H 0.085 0.915 27 H 0.096 0.904 28 H 0.078 0.922 29 H 0.114 0.886 30 H 0.115 0.885 31 H 0.120 0.880 32 H 0.099 0.901 33 H 0.077 0.923 34 H 0.068 0.932 35 H 0.110 0.890 36 H 0.100 0.900 37 H 0.087 0.913 38 H 0.034 0.966 39 H -0.003 1.003 40 H 0.042 0.958 41 H 0.039 0.961 42 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -10.130 11.046 13.170 19.952 hybrid contribution 0.157 -1.464 -1.044 1.805 sum -9.973 9.582 12.126 18.394 Atomic orbital electron populations 1.20867 0.89314 1.03293 1.03319 1.23398 0.98100 0.96112 0.96436 1.21762 0.92651 0.98025 1.05603 1.21372 1.00763 0.93248 1.02791 1.19533 0.88710 0.82449 0.82450 1.91650 1.67291 1.37254 1.37831 1.47884 1.05326 1.41657 1.39360 1.22096 0.98437 0.90347 0.92200 1.22231 1.02894 0.95387 1.01970 1.22133 0.80318 0.95595 0.97609 0.85332 1.23203 1.01153 0.97449 0.96443 1.20714 0.96185 0.84155 0.90969 1.44209 1.83812 1.01370 1.00840 1.19015 1.38030 0.83404 0.91707 0.92225 1.25252 1.04202 0.99684 0.96416 1.70194 1.59193 1.30091 1.00300 0.85367 0.76875 0.81861 0.77276 1.22957 1.22369 1.19679 1.21969 0.96792 0.94631 0.86920 0.88562 0.90739 0.91482 0.90449 0.92187 0.88619 0.88451 0.87961 0.90111 0.92274 0.93177 0.88981 0.90034 0.91318 0.96610 1.00291 0.95784 0.96124 0.94933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.37 8.95 71.24 0.64 -1.73 16 2 C -0.12 -3.89 9.84 24.52 0.24 -3.65 16 3 C -0.18 -5.76 5.03 -18.71 -0.09 -5.86 16 4 C -0.13 -2.77 8.38 71.24 0.60 -2.17 16 5 C 0.48 19.78 6.71 86.57 0.58 20.36 16 6 O -0.47 -25.57 8.78 -4.07 -0.04 -25.61 16 7 N -0.61 -19.49 2.64 -794.36 -2.10 -21.59 16 8 C 0.09 1.84 5.57 86.38 0.48 2.32 16 9 C -0.17 -2.69 9.24 71.98 0.67 -2.02 16 10 C 0.15 5.03 3.32 46.39 0.15 5.18 16 11 H 0.13 3.17 8.01 -2.39 -0.02 3.15 16 12 C -0.14 -5.54 6.52 31.78 0.21 -5.33 16 13 C 0.20 11.18 4.22 86.73 0.37 11.55 16 14 N -0.58 -32.39 1.73 -692.00 -1.20 -33.59 16 15 C -0.19 -11.96 8.80 84.03 0.74 -11.22 16 16 H 0.06 3.67 7.83 -2.91 -0.02 3.65 16 17 C -0.06 -4.06 5.38 84.86 0.46 -3.60 16 18 N -0.95 -63.33 10.34 21.65 0.22 -63.11 16 19 Si 0.95 51.57 29.56 68.60 2.03 53.60 16 20 H -0.30 -16.39 7.11 99.48 0.71 -15.68 16 21 H -0.30 -15.88 7.11 99.48 0.71 -15.18 16 22 H -0.27 -13.84 7.11 99.48 0.71 -13.13 16 23 C 0.12 5.43 6.19 86.85 0.54 5.97 16 24 H 0.10 1.49 7.40 -2.39 -0.02 1.47 16 25 H 0.07 1.50 8.10 -2.39 -0.02 1.48 16 26 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 27 H 0.08 3.07 8.03 -2.91 -0.02 3.05 16 28 H 0.06 1.41 8.14 -2.38 -0.02 1.39 16 29 H 0.10 1.49 6.60 -2.39 -0.02 1.47 16 30 H 0.10 1.87 2.84 -2.39 -0.01 1.86 16 31 H 0.10 1.90 4.51 -2.39 -0.01 1.89 16 32 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 33 H 0.06 0.99 7.87 -2.39 -0.02 0.97 16 34 H 0.05 0.94 6.94 -2.39 -0.02 0.93 16 35 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 36 H 0.08 2.79 8.14 -2.39 -0.02 2.77 16 37 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 38 H 0.02 1.00 5.71 -2.39 -0.01 0.99 16 39 H -0.02 -1.30 7.62 -2.38 -0.02 -1.32 16 40 H 0.23 15.32 8.31 -92.71 -0.77 14.55 16 41 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 42 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 Total: -1.00 -83.34 317.44 5.48 -77.86 By element: Atomic # 1 Polarization: 1.64 SS G_CDS: 0.99 Total: 2.64 kcal Atomic # 6 Polarization: 4.23 SS G_CDS: 5.57 Total: 9.80 kcal Atomic # 7 Polarization: -115.21 SS G_CDS: -3.08 Total: -118.29 kcal Atomic # 8 Polarization: -25.57 SS G_CDS: -0.04 Total: -25.61 kcal Atomic # 14 Polarization: 51.57 SS G_CDS: 2.03 Total: 53.60 kcal Total: -83.34 5.48 -77.86 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715035533.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.672 kcal (2) G-P(sol) polarization free energy of solvation -83.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.862 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds