Wall clock time and date at job start Mon Mar 30 2020 00:44:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46504 * 109.46807 * 2 1 4 4 C 1.46498 * 119.99999 * 270.00167 * 3 2 1 5 5 C 1.53004 * 109.47184 * 269.99949 * 4 3 2 6 6 N 1.46495 * 109.47547 * 179.97438 * 5 4 3 7 7 C 1.36929 * 120.00293 * 180.02562 * 6 5 4 8 8 H 1.08000 * 120.00276 * 359.97438 * 7 6 5 9 9 C 1.38814 * 120.00376 * 179.97438 * 7 6 5 10 10 N 1.31617 * 119.99530 * 0.02562 * 9 7 6 11 11 Si 1.86803 * 120.00257 * 179.97438 * 9 7 6 12 12 H 1.48494 * 109.46916 * 0.02562 * 11 9 7 13 13 H 1.48504 * 109.46968 * 120.00332 * 11 9 7 14 14 H 1.48501 * 109.47134 * 239.99963 * 11 9 7 15 15 C 1.34780 * 120.00249 * 89.99931 * 3 2 1 16 16 O 1.21611 * 120.00344 * 179.97438 * 15 3 2 17 17 C 1.47103 * 119.99595 * 0.27703 * 15 3 2 18 18 C 1.32998 * 119.99992 * 172.37696 * 17 15 3 19 19 C 1.50694 * 120.00207 * 172.81729 * 18 17 15 20 20 C 1.50700 * 119.99688 * 352.82375 * 18 17 15 21 21 C 1.52999 * 117.49722 * 180.02562 * 20 18 17 22 22 C 1.52995 * 117.50197 * 111.42075 * 20 18 17 23 23 H 1.09001 * 109.47519 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47211 * 300.00087 * 1 2 3 25 25 H 1.09002 * 109.47481 * 59.99602 * 1 2 3 26 26 H 1.08996 * 109.47140 * 240.00651 * 2 1 3 27 27 H 1.08998 * 109.47243 * 119.99490 * 2 1 3 28 28 H 1.08998 * 109.47036 * 29.99688 * 4 3 2 29 29 H 1.08997 * 109.47628 * 150.00151 * 4 3 2 30 30 H 1.08997 * 109.47155 * 300.00557 * 5 4 3 31 31 H 1.09013 * 109.46893 * 59.99811 * 5 4 3 32 32 H 0.97003 * 119.99970 * 359.97438 * 6 5 4 33 33 H 0.97010 * 119.99651 * 179.97438 * 10 9 7 34 34 H 1.07999 * 120.00252 * 352.37529 * 17 15 3 35 35 H 1.09000 * 109.46811 * 89.99907 * 19 18 17 36 36 H 1.08996 * 109.47037 * 210.00353 * 19 18 17 37 37 H 1.09004 * 109.47053 * 330.00198 * 19 18 17 38 38 H 1.09008 * 115.55070 * 325.74326 * 20 18 17 39 39 H 1.08998 * 117.49717 * 359.97438 * 21 20 18 40 40 H 1.09004 * 117.49985 * 145.01386 * 21 20 18 41 41 H 1.09002 * 117.49674 * 214.98010 * 22 20 18 42 42 H 1.08996 * 117.49989 * 359.97003 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2623 2.0719 -1.2687 5 6 3.7074 1.8316 -1.7104 6 7 3.9514 2.5217 -2.9794 7 6 5.1833 2.4487 -3.5727 8 1 5.9753 1.8827 -3.1049 9 6 5.4144 3.1021 -4.7754 10 7 4.4494 3.7923 -5.3453 11 14 7.0953 3.0031 -5.5844 12 1 7.9987 2.1725 -4.7484 13 1 6.9618 2.3882 -6.9295 14 1 7.6612 4.3695 -5.7187 15 6 2.2429 2.0167 1.1672 16 8 2.6486 3.1631 1.1672 17 6 2.0035 1.3212 2.4411 18 6 2.3665 1.8895 3.5875 19 6 1.9783 1.2561 4.8986 20 6 3.1658 3.1670 3.5752 21 6 3.5531 3.7709 4.9265 22 6 2.4740 4.4380 4.0719 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 1.8933 -0.5137 -0.8900 27 1 1.8933 -0.5137 0.8900 28 1 1.5816 1.6877 -2.0283 29 1 2.0954 3.1411 -1.1385 30 1 4.3882 2.2156 -0.9508 31 1 3.8744 0.7622 -1.8408 32 1 3.2400 3.0297 -3.3998 33 1 4.6109 4.2493 -6.1856 34 1 1.5330 0.3491 2.4456 35 1 2.7559 0.5582 5.2091 36 1 1.8620 2.0311 5.6561 37 1 1.0364 0.7208 4.7787 38 1 3.8772 3.2686 2.7555 39 1 3.2294 3.2445 5.8244 40 1 4.5198 4.2698 4.9964 41 1 2.7305 5.3759 3.5792 42 1 1.4406 4.3504 4.4071 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715726799.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:44:44 Heat of formation + Delta-G solvation = 18.914134 kcal Electronic energy + Delta-G solvation = -20287.776577 eV Core-core repulsion = 17269.611738 eV Total energy + Delta-G solvation = -3018.164839 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.97353 -37.91784 -35.95343 -34.56772 -33.44862 -31.69067 -30.22257 -28.69804 -27.10918 -24.13742 -23.55541 -22.79551 -22.32059 -21.47826 -19.60087 -18.04424 -17.28900 -16.96254 -16.24182 -15.27301 -15.14007 -14.42254 -14.28281 -13.85771 -13.70438 -13.55747 -13.27333 -13.12450 -13.07970 -12.86682 -12.50659 -12.39100 -11.89919 -11.55647 -11.33436 -11.21959 -11.19013 -10.93177 -10.84691 -10.78301 -10.61436 -10.35030 -10.03356 -9.71270 -9.27957 -8.95189 -8.83257 -8.33865 -6.88191 -5.72153 -3.00910 1.32937 3.21945 3.44246 3.46753 3.52277 3.54756 3.95163 4.46773 4.57645 4.65510 4.85541 4.95281 4.97664 5.07558 5.17393 5.21325 5.28999 5.32898 5.44550 5.52784 5.57753 5.65986 5.68258 5.73073 5.73452 5.86100 5.90810 6.09385 6.10808 6.13483 6.21153 6.25001 6.28357 6.51028 6.69601 6.84441 7.01878 7.68835 7.74896 8.45728 8.49765 9.57426 10.14480 10.49659 11.50952 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.020670 B = 0.004134 C = 0.003661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1354.304772 B = 6771.039085 C = 7645.532976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.104 3.896 3 N -0.606 5.606 4 C 0.110 3.890 5 C 0.144 3.856 6 N -0.731 5.731 7 C -0.236 4.236 8 H 0.070 0.930 9 C -0.015 4.015 10 N -0.934 5.934 11 Si 0.908 3.092 12 H -0.280 1.280 13 H -0.291 1.291 14 H -0.291 1.291 15 C 0.542 3.458 16 O -0.529 6.529 17 C -0.223 4.223 18 C -0.010 4.010 19 C -0.127 4.127 20 C -0.115 4.115 21 C -0.192 4.192 22 C -0.154 4.154 23 H 0.064 0.936 24 H 0.056 0.944 25 H 0.060 0.940 26 H 0.082 0.918 27 H 0.077 0.923 28 H 0.074 0.926 29 H 0.083 0.917 30 H 0.022 0.978 31 H 0.017 0.983 32 H 0.384 0.616 33 H 0.254 0.746 34 H 0.128 0.872 35 H 0.078 0.922 36 H 0.073 0.927 37 H 0.070 0.930 38 H 0.132 0.868 39 H 0.094 0.906 40 H 0.095 0.905 41 H 0.097 0.903 42 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.091 -7.826 20.744 23.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.019 4.019 3 N -0.339 5.339 4 C -0.013 4.013 5 C 0.015 3.985 6 N -0.375 5.375 7 C -0.367 4.367 8 H 0.088 0.912 9 C -0.211 4.211 10 N -0.583 5.583 11 Si 0.739 3.261 12 H -0.206 1.206 13 H -0.219 1.219 14 H -0.218 1.218 15 C 0.333 3.667 16 O -0.407 6.407 17 C -0.244 4.244 18 C -0.012 4.012 19 C -0.183 4.183 20 C -0.132 4.132 21 C -0.229 4.229 22 C -0.191 4.191 23 H 0.083 0.917 24 H 0.075 0.925 25 H 0.079 0.921 26 H 0.100 0.900 27 H 0.095 0.905 28 H 0.092 0.908 29 H 0.102 0.898 30 H 0.040 0.960 31 H 0.034 0.966 32 H 0.217 0.783 33 H 0.064 0.936 34 H 0.146 0.854 35 H 0.096 0.904 36 H 0.091 0.909 37 H 0.089 0.911 38 H 0.150 0.850 39 H 0.112 0.888 40 H 0.113 0.887 41 H 0.115 0.885 42 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -8.706 -7.268 20.693 23.597 hybrid contribution 0.605 -0.046 -0.809 1.011 sum -8.101 -7.314 19.884 22.682 Atomic orbital electron populations 1.22226 0.96094 1.01990 1.02638 1.21571 0.94182 0.82881 1.03296 1.47829 1.65773 1.14044 1.06228 1.21641 0.97896 0.98376 0.83390 1.20904 0.92921 0.95377 0.89266 1.42226 1.12863 1.60823 1.21626 1.19260 0.89317 1.25915 1.02226 0.91186 1.24742 0.97824 1.00421 0.98067 1.69677 1.31508 1.37543 1.19529 0.86098 0.83653 0.77220 0.79137 1.20570 1.21862 1.21824 1.18525 0.77803 0.86300 0.84076 1.90781 1.45158 1.17725 1.87079 1.22487 1.08356 1.01413 0.92156 1.21797 0.91401 0.93477 0.94478 1.20993 1.01849 1.00908 0.94557 1.21410 1.02536 0.91409 0.97879 1.23131 1.00175 1.04862 0.94693 1.22769 0.97157 0.96432 1.02747 0.91691 0.92534 0.92083 0.89997 0.90483 0.90776 0.89816 0.95991 0.96568 0.78295 0.93577 0.85440 0.90388 0.90862 0.91114 0.85001 0.88809 0.88694 0.88464 0.89261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.58 10.24 37.16 0.38 -1.20 16 2 C 0.10 1.14 5.80 -4.04 -0.02 1.12 16 3 N -0.61 -9.09 2.47 -175.08 -0.43 -9.53 16 4 C 0.11 1.98 5.52 -4.04 -0.02 1.96 16 5 C 0.14 3.17 6.58 -4.04 -0.03 3.14 16 6 N -0.73 -19.64 5.60 -59.91 -0.34 -19.98 16 7 C -0.24 -6.93 9.99 -15.06 -0.15 -7.08 16 8 H 0.07 2.01 7.83 -52.49 -0.41 1.60 16 9 C -0.01 -0.44 5.50 -17.43 -0.10 -0.54 16 10 N -0.93 -29.06 13.06 55.49 0.72 -28.33 16 11 Si 0.91 23.07 29.55 -169.99 -5.02 18.05 16 12 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 13 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 14 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 15 C 0.54 8.61 7.52 -12.66 -0.10 8.52 16 16 O -0.53 -10.27 12.98 5.27 0.07 -10.20 16 17 C -0.22 -2.67 8.73 -37.80 -0.33 -3.00 16 18 C -0.01 -0.11 5.80 -101.17 -0.59 -0.70 16 19 C -0.13 -0.94 9.53 36.00 0.34 -0.59 16 20 C -0.11 -1.46 4.26 -91.77 -0.39 -1.85 16 21 C -0.19 -1.92 9.80 -26.75 -0.26 -2.18 16 22 C -0.15 -1.78 10.23 -26.75 -0.27 -2.06 16 23 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 24 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.08 0.91 8.07 -51.93 -0.42 0.49 16 27 H 0.08 0.70 6.19 -51.93 -0.32 0.38 16 28 H 0.07 1.24 8.07 -51.93 -0.42 0.82 16 29 H 0.08 1.68 7.42 -51.93 -0.39 1.29 16 30 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.02 0.35 8.14 -51.92 -0.42 -0.07 16 32 H 0.38 10.68 7.67 -40.82 -0.31 10.37 16 33 H 0.25 7.60 8.31 -40.82 -0.34 7.26 16 34 H 0.13 1.16 6.36 -52.49 -0.33 0.83 16 35 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.07 0.49 6.30 -51.93 -0.33 0.16 16 37 H 0.07 0.44 8.07 -51.93 -0.42 0.02 16 38 H 0.13 2.12 6.40 -51.92 -0.33 1.78 16 39 H 0.09 0.76 6.27 -51.93 -0.33 0.43 16 40 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 41 H 0.10 1.19 8.14 -51.93 -0.42 0.77 16 42 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 LS Contribution 344.73 15.07 5.19 5.19 Total: -1.00 -33.78 344.73 -8.29 -42.06 By element: Atomic # 1 Polarization: 14.13 SS G_CDS: -6.95 Total: 7.19 kcal Atomic # 6 Polarization: -2.92 SS G_CDS: -1.53 Total: -4.46 kcal Atomic # 7 Polarization: -57.79 SS G_CDS: -0.04 Total: -57.83 kcal Atomic # 8 Polarization: -10.27 SS G_CDS: 0.07 Total: -10.20 kcal Atomic # 14 Polarization: 23.07 SS G_CDS: -5.02 Total: 18.05 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -33.78 -8.29 -42.06 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715726799.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.979 kcal (2) G-P(sol) polarization free energy of solvation -33.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.065 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds