Wall clock time and date at job start Mon Mar 30 2020 00:44:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46504 * 109.46807 * 2 1 4 4 C 1.46498 * 119.99999 * 270.00167 * 3 2 1 5 5 C 1.53004 * 109.47184 * 269.99949 * 4 3 2 6 6 N 1.46495 * 109.47547 * 179.97438 * 5 4 3 7 7 C 1.36929 * 120.00293 * 180.02562 * 6 5 4 8 8 H 1.08000 * 120.00276 * 359.97438 * 7 6 5 9 9 C 1.38814 * 120.00376 * 179.97438 * 7 6 5 10 10 N 1.31617 * 119.99530 * 0.02562 * 9 7 6 11 11 Si 1.86803 * 120.00257 * 179.97438 * 9 7 6 12 12 H 1.48494 * 109.46916 * 0.02562 * 11 9 7 13 13 H 1.48504 * 109.46968 * 120.00332 * 11 9 7 14 14 H 1.48501 * 109.47134 * 239.99963 * 11 9 7 15 15 C 1.34780 * 120.00249 * 89.99931 * 3 2 1 16 16 O 1.21611 * 120.00344 * 179.97438 * 15 3 2 17 17 C 1.47103 * 119.99595 * 0.27703 * 15 3 2 18 18 C 1.32998 * 119.99992 * 172.37696 * 17 15 3 19 19 C 1.50694 * 120.00207 * 172.81729 * 18 17 15 20 20 C 1.50700 * 119.99688 * 352.82375 * 18 17 15 21 21 C 1.52999 * 117.49722 * 180.02562 * 20 18 17 22 22 C 1.52995 * 117.50197 * 111.42075 * 20 18 17 23 23 H 1.09001 * 109.47519 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47211 * 300.00087 * 1 2 3 25 25 H 1.09002 * 109.47481 * 59.99602 * 1 2 3 26 26 H 1.08996 * 109.47140 * 240.00651 * 2 1 3 27 27 H 1.08998 * 109.47243 * 119.99490 * 2 1 3 28 28 H 1.08998 * 109.47036 * 29.99688 * 4 3 2 29 29 H 1.08997 * 109.47628 * 150.00151 * 4 3 2 30 30 H 1.08997 * 109.47155 * 300.00557 * 5 4 3 31 31 H 1.09013 * 109.46893 * 59.99811 * 5 4 3 32 32 H 0.97003 * 119.99970 * 359.97438 * 6 5 4 33 33 H 0.97010 * 119.99651 * 179.97438 * 10 9 7 34 34 H 1.07999 * 120.00252 * 352.37529 * 17 15 3 35 35 H 1.09000 * 109.46811 * 89.99907 * 19 18 17 36 36 H 1.08996 * 109.47037 * 210.00353 * 19 18 17 37 37 H 1.09004 * 109.47053 * 330.00198 * 19 18 17 38 38 H 1.09008 * 115.55070 * 325.74326 * 20 18 17 39 39 H 1.08998 * 117.49717 * 359.97438 * 21 20 18 40 40 H 1.09004 * 117.49985 * 145.01386 * 21 20 18 41 41 H 1.09002 * 117.49674 * 214.98010 * 22 20 18 42 42 H 1.08996 * 117.49989 * 359.97003 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2623 2.0719 -1.2687 5 6 3.7074 1.8316 -1.7104 6 7 3.9514 2.5217 -2.9794 7 6 5.1833 2.4487 -3.5727 8 1 5.9753 1.8827 -3.1049 9 6 5.4144 3.1021 -4.7754 10 7 4.4494 3.7923 -5.3453 11 14 7.0953 3.0031 -5.5844 12 1 7.9987 2.1725 -4.7484 13 1 6.9618 2.3882 -6.9295 14 1 7.6612 4.3695 -5.7187 15 6 2.2429 2.0167 1.1672 16 8 2.6486 3.1631 1.1672 17 6 2.0035 1.3212 2.4411 18 6 2.3665 1.8895 3.5875 19 6 1.9783 1.2561 4.8986 20 6 3.1658 3.1670 3.5752 21 6 3.5531 3.7709 4.9265 22 6 2.4740 4.4380 4.0719 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 1.8933 -0.5137 -0.8900 27 1 1.8933 -0.5137 0.8900 28 1 1.5816 1.6877 -2.0283 29 1 2.0954 3.1411 -1.1385 30 1 4.3882 2.2156 -0.9508 31 1 3.8744 0.7622 -1.8408 32 1 3.2400 3.0297 -3.3998 33 1 4.6109 4.2493 -6.1856 34 1 1.5330 0.3491 2.4456 35 1 2.7559 0.5582 5.2091 36 1 1.8620 2.0311 5.6561 37 1 1.0364 0.7208 4.7787 38 1 3.8772 3.2686 2.7555 39 1 3.2294 3.2445 5.8244 40 1 4.5198 4.2698 4.9964 41 1 2.7305 5.3759 3.5792 42 1 1.4406 4.3504 4.4071 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715726799.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:44:43 Heat of formation + Delta-G solvation = -2.102093 kcal Electronic energy + Delta-G solvation = -20288.687909 eV Core-core repulsion = 17269.611738 eV Total energy + Delta-G solvation = -3019.076171 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.14316 -38.89374 -37.34279 -36.35993 -34.41643 -33.52192 -31.55239 -29.87299 -28.39117 -25.85757 -24.61652 -24.01533 -23.29292 -23.01700 -20.78065 -19.27266 -19.00223 -18.21638 -17.42718 -16.78511 -16.26811 -16.06985 -15.65960 -15.26041 -14.99223 -14.92878 -14.66271 -14.28813 -14.10995 -13.86357 -13.51103 -13.14682 -13.10835 -12.94281 -12.81127 -12.66125 -12.46569 -12.29559 -12.15439 -12.11734 -12.00405 -11.88724 -11.66034 -11.25089 -11.02122 -10.45920 -9.93378 -9.53928 -9.10147 -8.00620 -5.31897 0.38825 1.44015 1.46294 1.56471 2.03287 2.31588 2.53934 3.05095 3.32510 3.58326 3.69792 3.98190 4.03057 4.06247 4.14956 4.19009 4.20801 4.26246 4.42696 4.46174 4.52442 4.58056 4.68269 4.75733 4.84125 4.89120 4.95571 4.96735 5.04457 5.06337 5.12476 5.23551 5.27683 5.37410 5.40818 5.45385 5.60205 5.71169 6.20842 6.54110 7.26592 7.29625 7.97777 8.24075 9.23053 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.020670 B = 0.004134 C = 0.003661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1354.304772 B = 6771.039085 C = 7645.532976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.097 3.903 3 N -0.606 5.606 4 C 0.126 3.874 5 C 0.152 3.848 6 N -0.743 5.743 7 C -0.252 4.252 8 H 0.072 0.928 9 C -0.072 4.072 10 N -0.968 5.968 11 Si 0.979 3.021 12 H -0.267 1.267 13 H -0.286 1.286 14 H -0.291 1.291 15 C 0.530 3.470 16 O -0.579 6.579 17 C -0.238 4.238 18 C 0.003 3.997 19 C -0.123 4.123 20 C -0.143 4.143 21 C -0.164 4.164 22 C -0.163 4.163 23 H 0.092 0.908 24 H 0.058 0.942 25 H 0.044 0.956 26 H 0.081 0.919 27 H 0.103 0.897 28 H 0.089 0.911 29 H 0.056 0.944 30 H -0.003 1.003 31 H 0.028 0.972 32 H 0.375 0.625 33 H 0.254 0.746 34 H 0.163 0.837 35 H 0.095 0.905 36 H 0.084 0.916 37 H 0.090 0.910 38 H 0.088 0.912 39 H 0.125 0.875 40 H 0.095 0.905 41 H 0.078 0.922 42 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.488 -10.084 22.870 26.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.024 4.024 3 N -0.338 5.338 4 C 0.002 3.998 5 C 0.024 3.976 6 N -0.386 5.386 7 C -0.384 4.384 8 H 0.090 0.910 9 C -0.265 4.265 10 N -0.618 5.618 11 Si 0.807 3.193 12 H -0.192 1.192 13 H -0.212 1.212 14 H -0.218 1.218 15 C 0.323 3.677 16 O -0.461 6.461 17 C -0.258 4.258 18 C 0.001 3.999 19 C -0.179 4.179 20 C -0.161 4.161 21 C -0.200 4.200 22 C -0.200 4.200 23 H 0.111 0.889 24 H 0.077 0.923 25 H 0.064 0.936 26 H 0.099 0.901 27 H 0.122 0.878 28 H 0.107 0.893 29 H 0.074 0.926 30 H 0.015 0.985 31 H 0.046 0.954 32 H 0.207 0.793 33 H 0.063 0.937 34 H 0.180 0.820 35 H 0.113 0.887 36 H 0.103 0.897 37 H 0.109 0.891 38 H 0.106 0.894 39 H 0.143 0.857 40 H 0.114 0.886 41 H 0.097 0.903 42 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -9.119 -9.582 22.852 26.404 hybrid contribution 0.748 0.690 -1.412 1.741 sum -8.371 -8.893 21.439 24.674 Atomic orbital electron populations 1.22170 0.94448 1.03584 1.02011 1.21894 0.95495 0.80444 1.04577 1.47942 1.65600 1.15538 1.04742 1.21220 0.95592 0.97447 0.85552 1.20923 0.94951 0.95009 0.86694 1.42409 1.12100 1.61191 1.22950 1.19629 0.90267 1.25863 1.02639 0.90988 1.25643 1.01856 1.00246 0.98731 1.69834 1.33654 1.38445 1.19880 0.84999 0.79027 0.77142 0.78108 1.19155 1.21230 1.21842 1.19356 0.76787 0.86041 0.85521 1.90766 1.47414 1.20065 1.87843 1.22526 1.10345 1.02854 0.90074 1.22179 0.89359 0.92106 0.96261 1.21088 1.03237 1.01437 0.92118 1.21306 1.03120 0.93244 0.98408 1.23229 0.99558 1.03041 0.94179 1.22792 0.98501 0.95256 1.03415 0.88893 0.92267 0.93642 0.90076 0.87842 0.89273 0.92566 0.98501 0.95417 0.79290 0.93724 0.81989 0.88682 0.89726 0.89115 0.89396 0.85744 0.88639 0.90308 0.87822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.65 10.24 71.98 0.74 -1.91 16 2 C 0.10 1.95 5.80 86.38 0.50 2.45 16 3 N -0.61 -18.30 2.47 -826.09 -2.04 -20.35 16 4 C 0.13 4.74 5.52 86.38 0.48 5.22 16 5 C 0.15 6.94 6.58 86.38 0.57 7.51 16 6 N -0.74 -41.30 5.60 -343.45 -1.92 -43.22 16 7 C -0.25 -15.09 9.99 84.04 0.84 -14.25 16 8 H 0.07 4.18 7.83 -2.91 -0.02 4.16 16 9 C -0.07 -4.34 5.50 84.86 0.47 -3.88 16 10 N -0.97 -61.36 13.06 21.65 0.28 -61.08 16 11 Si 0.98 47.79 29.55 68.60 2.03 49.81 16 12 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 13 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 14 H -0.29 -14.17 7.11 99.48 0.71 -13.46 16 15 C 0.53 17.21 7.52 86.57 0.65 17.86 16 16 O -0.58 -24.09 12.98 -4.07 -0.05 -24.14 16 17 C -0.24 -5.31 8.73 23.43 0.20 -5.10 16 18 C 0.00 0.06 5.80 -17.62 -0.10 -0.04 16 19 C -0.12 -1.30 9.53 71.23 0.68 -0.62 16 20 C -0.14 -3.68 4.26 -11.54 -0.05 -3.73 16 21 C -0.16 -3.02 9.80 30.58 0.30 -2.72 16 22 C -0.16 -3.77 10.23 30.58 0.31 -3.46 16 23 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 24 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 25 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 26 H 0.08 1.65 8.07 -2.39 -0.02 1.63 16 27 H 0.10 1.54 6.19 -2.39 -0.01 1.53 16 28 H 0.09 3.06 8.07 -2.39 -0.02 3.04 16 29 H 0.06 2.42 7.42 -2.39 -0.02 2.40 16 30 H 0.00 -0.15 8.14 -2.39 -0.02 -0.17 16 31 H 0.03 1.21 8.14 -2.38 -0.02 1.19 16 32 H 0.38 21.77 7.67 -92.71 -0.71 21.06 16 33 H 0.25 15.41 8.31 -92.70 -0.77 14.64 16 34 H 0.16 2.37 6.36 -2.91 -0.02 2.35 16 35 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 36 H 0.08 0.74 6.30 -2.39 -0.02 0.72 16 37 H 0.09 0.67 8.07 -2.38 -0.02 0.65 16 38 H 0.09 3.08 6.40 -2.38 -0.02 3.06 16 39 H 0.12 1.54 6.27 -2.39 -0.01 1.53 16 40 H 0.10 1.75 8.14 -2.38 -0.02 1.73 16 41 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 42 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16 Total: -1.00 -76.68 344.73 4.16 -72.51 By element: Atomic # 1 Polarization: 28.85 SS G_CDS: 0.29 Total: 29.14 kcal Atomic # 6 Polarization: -8.26 SS G_CDS: 5.59 Total: -2.67 kcal Atomic # 7 Polarization: -120.97 SS G_CDS: -3.68 Total: -124.65 kcal Atomic # 8 Polarization: -24.09 SS G_CDS: -0.05 Total: -24.14 kcal Atomic # 14 Polarization: 47.79 SS G_CDS: 2.03 Total: 49.81 kcal Total: -76.68 4.16 -72.51 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715726799.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.410 kcal (2) G-P(sol) polarization free energy of solvation -76.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds