Wall clock time and date at job start Mon Mar 30 2020 00:44:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46503 * 109.47105 * 2 1 4 4 C 1.46500 * 119.99439 * 90.00070 * 3 2 1 5 5 C 1.53000 * 109.47260 * 90.00105 * 4 3 2 6 6 N 1.46502 * 109.47380 * 179.97438 * 5 4 3 7 7 C 1.36939 * 120.00098 * 180.02562 * 6 5 4 8 8 H 1.07998 * 119.99968 * 359.97438 * 7 6 5 9 9 C 1.38807 * 119.99852 * 180.02562 * 7 6 5 10 10 N 1.31621 * 120.00255 * 0.02562 * 9 7 6 11 11 Si 1.86801 * 119.99967 * 179.97438 * 9 7 6 12 12 H 1.48494 * 109.47105 * 89.99801 * 11 9 7 13 13 H 1.48504 * 109.47079 * 210.00353 * 11 9 7 14 14 H 1.48508 * 109.46990 * 329.99825 * 11 9 7 15 15 C 1.34765 * 120.00193 * 270.00139 * 3 2 1 16 16 O 1.21621 * 120.00286 * 179.97438 * 15 3 2 17 17 C 1.47107 * 120.00270 * 0.02562 * 15 3 2 18 18 C 1.32990 * 120.00117 * 173.76718 * 17 15 3 19 19 C 1.50695 * 120.00190 * 353.10620 * 18 17 15 20 20 C 1.50706 * 119.99760 * 173.11036 * 18 17 15 21 21 C 1.52996 * 117.49482 * 188.62314 * 20 18 17 22 22 C 1.52994 * 117.49981 * 119.99832 * 20 18 17 23 23 H 1.08999 * 109.47450 * 60.00002 * 1 2 3 24 24 H 1.09004 * 109.47318 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47110 * 299.99683 * 1 2 3 26 26 H 1.08999 * 109.47110 * 240.00317 * 2 1 3 27 27 H 1.08997 * 109.46952 * 120.00144 * 2 1 3 28 28 H 1.09006 * 109.46598 * 209.99814 * 4 3 2 29 29 H 1.09001 * 109.47786 * 329.99943 * 4 3 2 30 30 H 1.08996 * 109.47459 * 299.99775 * 5 4 3 31 31 H 1.09013 * 109.46819 * 59.99671 * 5 4 3 32 32 H 0.96999 * 119.99815 * 359.97438 * 6 5 4 33 33 H 0.97005 * 119.99957 * 180.02562 * 10 9 7 34 34 H 1.08006 * 119.99587 * 353.76525 * 17 15 3 35 35 H 1.09008 * 109.47081 * 84.53625 * 19 18 17 36 36 H 1.09002 * 109.47271 * 204.53087 * 19 18 17 37 37 H 1.09000 * 109.47178 * 324.53671 * 19 18 17 38 38 H 1.08999 * 115.54612 * 334.32520 * 20 18 17 39 39 H 1.09001 * 117.50343 * 359.97438 * 21 20 18 40 40 H 1.09005 * 117.49880 * 145.02057 * 21 20 18 41 41 H 1.08998 * 117.50038 * 214.97570 * 22 20 18 42 42 H 1.08998 * 117.49836 * 359.97438 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2624 2.0717 1.2688 5 6 3.7074 1.8313 1.7105 6 7 3.9518 2.5223 2.9790 7 6 5.1842 2.4503 3.5716 8 1 5.9759 1.8837 3.1041 9 6 5.4155 3.1045 4.7738 10 7 4.4502 3.7938 5.3443 11 14 7.0964 3.0057 5.5826 12 1 7.9459 4.1226 5.0970 13 1 6.9432 3.1047 7.0564 14 1 7.7364 1.7108 5.2375 15 6 2.2429 2.0166 -1.1671 16 8 2.6479 3.1634 -1.1671 17 6 1.9972 1.3234 -2.4411 18 6 2.0990 1.9866 -3.5894 19 6 2.3121 3.4784 -3.5816 20 6 2.0011 1.2461 -4.8984 21 6 2.3256 2.0235 -6.1756 22 6 0.8772 1.6485 -5.8553 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 2.0955 3.1410 1.1385 29 1 1.5817 1.6876 2.0285 30 1 3.8745 0.7621 1.8408 31 1 4.3883 2.2155 0.9508 32 1 3.2408 3.0315 3.3987 33 1 4.6120 4.2513 6.1843 34 1 1.7341 0.2759 -2.4439 35 1 3.3756 3.6929 -3.4757 36 1 1.9474 3.9024 -4.5172 37 1 1.7676 3.9188 -2.7464 38 1 2.2808 0.1932 -4.8648 39 1 2.6094 3.0705 -6.0692 40 1 2.8189 1.4820 -6.9827 41 1 0.4177 0.8603 -6.4517 42 1 0.2083 2.4484 -5.5379 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715726801.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:44:47 Heat of formation + Delta-G solvation = 18.488062 kcal Electronic energy + Delta-G solvation = -20090.834915 eV Core-core repulsion = 17072.651600 eV Total energy + Delta-G solvation = -3018.183315 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.98917 -38.19963 -36.18167 -34.54741 -33.27568 -31.64364 -30.23553 -28.49551 -27.00427 -24.50902 -23.57990 -22.94650 -22.66075 -21.42563 -19.40574 -18.08473 -17.35480 -16.95696 -16.29489 -15.56858 -14.92136 -14.83664 -14.42146 -13.85981 -13.61492 -13.59392 -13.37097 -13.07268 -12.94165 -12.75319 -12.41225 -12.11905 -11.95756 -11.71595 -11.49197 -11.19034 -11.13591 -11.04351 -10.91349 -10.83844 -10.72976 -10.60106 -10.07264 -9.71383 -9.31747 -9.02594 -8.82352 -8.33766 -6.87938 -5.71704 -3.00558 1.31691 3.19489 3.35972 3.47662 3.52364 3.54103 3.66838 4.25265 4.54713 4.62571 4.65479 4.75666 4.88954 4.89075 5.11571 5.18659 5.29137 5.35643 5.48920 5.55499 5.59262 5.68267 5.71830 5.73572 5.74569 5.77091 5.86641 5.90365 6.04809 6.11308 6.15422 6.22623 6.43180 6.49099 6.69141 6.84275 7.01459 7.66982 7.74753 8.44749 8.48067 9.57787 10.14746 10.49980 11.51337 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.027627 B = 0.003568 C = 0.003328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.246425 B = 7845.752250 C = 8411.877273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.104 3.896 3 N -0.605 5.605 4 C 0.109 3.891 5 C 0.143 3.857 6 N -0.731 5.731 7 C -0.236 4.236 8 H 0.070 0.930 9 C -0.015 4.015 10 N -0.934 5.934 11 Si 0.908 3.092 12 H -0.289 1.289 13 H -0.291 1.291 14 H -0.282 1.282 15 C 0.543 3.457 16 O -0.534 6.534 17 C -0.224 4.224 18 C -0.007 4.007 19 C -0.125 4.125 20 C -0.131 4.131 21 C -0.172 4.172 22 C -0.168 4.168 23 H 0.056 0.944 24 H 0.064 0.936 25 H 0.060 0.940 26 H 0.077 0.923 27 H 0.082 0.918 28 H 0.084 0.916 29 H 0.075 0.925 30 H 0.017 0.983 31 H 0.023 0.977 32 H 0.384 0.616 33 H 0.255 0.745 34 H 0.127 0.873 35 H 0.081 0.919 36 H 0.052 0.948 37 H 0.092 0.908 38 H 0.115 0.885 39 H 0.102 0.898 40 H 0.098 0.902 41 H 0.098 0.902 42 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.299 -8.495 -21.440 25.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.020 4.020 3 N -0.337 5.337 4 C -0.013 4.013 5 C 0.015 3.985 6 N -0.375 5.375 7 C -0.368 4.368 8 H 0.088 0.912 9 C -0.211 4.211 10 N -0.583 5.583 11 Si 0.740 3.260 12 H -0.217 1.217 13 H -0.218 1.218 14 H -0.208 1.208 15 C 0.334 3.666 16 O -0.413 6.413 17 C -0.245 4.245 18 C -0.009 4.009 19 C -0.181 4.181 20 C -0.149 4.149 21 C -0.209 4.209 22 C -0.205 4.205 23 H 0.075 0.925 24 H 0.083 0.917 25 H 0.079 0.921 26 H 0.096 0.904 27 H 0.100 0.900 28 H 0.102 0.898 29 H 0.093 0.907 30 H 0.035 0.965 31 H 0.040 0.960 32 H 0.217 0.783 33 H 0.065 0.935 34 H 0.144 0.856 35 H 0.099 0.901 36 H 0.071 0.929 37 H 0.110 0.890 38 H 0.133 0.867 39 H 0.121 0.879 40 H 0.117 0.883 41 H 0.117 0.883 42 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -9.918 -7.944 -21.371 24.863 hybrid contribution 0.674 -0.149 0.736 1.009 sum -9.245 -8.092 -20.635 24.016 Atomic orbital electron populations 1.22214 0.96033 1.02006 1.02623 1.21585 0.94244 0.82818 1.03307 1.47813 1.65537 1.14159 1.06204 1.21658 0.97958 0.98362 0.83359 1.20910 0.92912 0.95403 0.89296 1.42219 1.12845 1.60744 1.21714 1.19215 0.89299 1.25959 1.02287 0.91231 1.24744 0.97831 1.00441 0.98055 1.69666 1.31504 1.37535 1.19600 0.86164 0.83722 0.77628 0.78535 1.21688 1.21757 1.20776 1.18481 0.77988 0.86016 0.84128 1.90783 1.45691 1.17602 1.87218 1.22410 1.09193 1.00919 0.91946 1.21765 0.90805 0.96052 0.92235 1.21173 1.03730 0.91000 1.02200 1.21268 1.05408 0.99439 0.88800 1.23069 0.98456 1.01618 0.97782 1.22976 0.91678 1.03792 1.02016 0.92500 0.91694 0.92104 0.90449 0.89993 0.89802 0.90695 0.96534 0.95953 0.78293 0.93524 0.85566 0.90104 0.92890 0.88986 0.86708 0.87936 0.88333 0.88320 0.88419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.60 10.24 37.16 0.38 -1.22 16 2 C 0.10 1.14 5.88 -4.04 -0.02 1.12 16 3 N -0.60 -9.10 2.47 -175.08 -0.43 -9.54 16 4 C 0.11 1.98 5.52 -4.04 -0.02 1.95 16 5 C 0.14 3.17 6.58 -4.04 -0.03 3.14 16 6 N -0.73 -19.67 5.60 -59.91 -0.34 -20.00 16 7 C -0.24 -6.95 9.99 -15.06 -0.15 -7.10 16 8 H 0.07 2.00 7.83 -52.49 -0.41 1.58 16 9 C -0.01 -0.45 5.50 -17.43 -0.10 -0.54 16 10 N -0.93 -29.10 13.06 55.49 0.72 -28.38 16 11 Si 0.91 23.11 29.55 -169.99 -5.02 18.09 16 12 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 13 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 14 H -0.28 -6.96 7.11 56.52 0.40 -6.55 16 15 C 0.54 8.65 7.48 -12.67 -0.09 8.56 16 16 O -0.53 -10.39 12.86 5.26 0.07 -10.33 16 17 C -0.22 -2.72 8.89 -37.80 -0.34 -3.05 16 18 C -0.01 -0.08 5.81 -101.17 -0.59 -0.66 16 19 C -0.13 -1.52 7.91 36.00 0.28 -1.24 16 20 C -0.13 -1.10 6.01 -91.77 -0.55 -1.65 16 21 C -0.17 -1.24 9.76 -26.73 -0.26 -1.50 16 22 C -0.17 -1.16 10.10 -26.73 -0.27 -1.43 16 23 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 24 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 25 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.08 0.71 6.03 -51.93 -0.31 0.39 16 27 H 0.08 0.91 8.07 -51.93 -0.42 0.49 16 28 H 0.08 1.67 7.42 -51.93 -0.39 1.29 16 29 H 0.07 1.25 8.07 -51.93 -0.42 0.83 16 30 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.02 0.54 8.14 -51.92 -0.42 0.12 16 32 H 0.38 10.68 7.67 -40.82 -0.31 10.37 16 33 H 0.25 7.64 8.31 -40.82 -0.34 7.30 16 34 H 0.13 1.21 6.17 -52.48 -0.32 0.88 16 35 H 0.08 1.08 8.05 -51.92 -0.42 0.66 16 36 H 0.05 0.51 6.30 -51.93 -0.33 0.19 16 37 H 0.09 1.34 6.11 -51.93 -0.32 1.02 16 38 H 0.11 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.10 0.76 6.42 -51.93 -0.33 0.43 16 40 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 344.26 15.07 5.19 5.19 Total: -1.00 -33.74 344.26 -8.49 -42.23 By element: Atomic # 1 Polarization: 13.29 SS G_CDS: -6.92 Total: 6.37 kcal Atomic # 6 Polarization: -1.88 SS G_CDS: -1.75 Total: -3.63 kcal Atomic # 7 Polarization: -57.87 SS G_CDS: -0.04 Total: -57.92 kcal Atomic # 8 Polarization: -10.39 SS G_CDS: 0.07 Total: -10.33 kcal Atomic # 14 Polarization: 23.11 SS G_CDS: -5.02 Total: 18.09 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -33.74 -8.49 -42.23 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715726801.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.715 kcal (2) G-P(sol) polarization free energy of solvation -33.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.227 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds