Wall clock time and date at job start Mon Mar 30 2020 00:44:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46503 * 109.47105 * 2 1 4 4 C 1.46500 * 119.99439 * 90.00070 * 3 2 1 5 5 C 1.53000 * 109.47260 * 90.00105 * 4 3 2 6 6 N 1.46502 * 109.47380 * 179.97438 * 5 4 3 7 7 C 1.36939 * 120.00098 * 180.02562 * 6 5 4 8 8 H 1.07998 * 119.99968 * 359.97438 * 7 6 5 9 9 C 1.38807 * 119.99852 * 180.02562 * 7 6 5 10 10 N 1.31621 * 120.00255 * 0.02562 * 9 7 6 11 11 Si 1.86801 * 119.99967 * 179.97438 * 9 7 6 12 12 H 1.48494 * 109.47105 * 89.99801 * 11 9 7 13 13 H 1.48504 * 109.47079 * 210.00353 * 11 9 7 14 14 H 1.48508 * 109.46990 * 329.99825 * 11 9 7 15 15 C 1.34765 * 120.00193 * 270.00139 * 3 2 1 16 16 O 1.21621 * 120.00286 * 179.97438 * 15 3 2 17 17 C 1.47107 * 120.00270 * 0.02562 * 15 3 2 18 18 C 1.32990 * 120.00117 * 173.76718 * 17 15 3 19 19 C 1.50695 * 120.00190 * 353.10620 * 18 17 15 20 20 C 1.50706 * 119.99760 * 173.11036 * 18 17 15 21 21 C 1.52996 * 117.49482 * 188.62314 * 20 18 17 22 22 C 1.52994 * 117.49981 * 119.99832 * 20 18 17 23 23 H 1.08999 * 109.47450 * 60.00002 * 1 2 3 24 24 H 1.09004 * 109.47318 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47110 * 299.99683 * 1 2 3 26 26 H 1.08999 * 109.47110 * 240.00317 * 2 1 3 27 27 H 1.08997 * 109.46952 * 120.00144 * 2 1 3 28 28 H 1.09006 * 109.46598 * 209.99814 * 4 3 2 29 29 H 1.09001 * 109.47786 * 329.99943 * 4 3 2 30 30 H 1.08996 * 109.47459 * 299.99775 * 5 4 3 31 31 H 1.09013 * 109.46819 * 59.99671 * 5 4 3 32 32 H 0.96999 * 119.99815 * 359.97438 * 6 5 4 33 33 H 0.97005 * 119.99957 * 180.02562 * 10 9 7 34 34 H 1.08006 * 119.99587 * 353.76525 * 17 15 3 35 35 H 1.09008 * 109.47081 * 84.53625 * 19 18 17 36 36 H 1.09002 * 109.47271 * 204.53087 * 19 18 17 37 37 H 1.09000 * 109.47178 * 324.53671 * 19 18 17 38 38 H 1.08999 * 115.54612 * 334.32520 * 20 18 17 39 39 H 1.09001 * 117.50343 * 359.97438 * 21 20 18 40 40 H 1.09005 * 117.49880 * 145.02057 * 21 20 18 41 41 H 1.08998 * 117.50038 * 214.97570 * 22 20 18 42 42 H 1.08998 * 117.49836 * 359.97438 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2624 2.0717 1.2688 5 6 3.7074 1.8313 1.7105 6 7 3.9518 2.5223 2.9790 7 6 5.1842 2.4503 3.5716 8 1 5.9759 1.8837 3.1041 9 6 5.4155 3.1045 4.7738 10 7 4.4502 3.7938 5.3443 11 14 7.0964 3.0057 5.5826 12 1 7.9459 4.1226 5.0970 13 1 6.9432 3.1047 7.0564 14 1 7.7364 1.7108 5.2375 15 6 2.2429 2.0166 -1.1671 16 8 2.6479 3.1634 -1.1671 17 6 1.9972 1.3234 -2.4411 18 6 2.0990 1.9866 -3.5894 19 6 2.3121 3.4784 -3.5816 20 6 2.0011 1.2461 -4.8984 21 6 2.3256 2.0235 -6.1756 22 6 0.8772 1.6485 -5.8553 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 2.0955 3.1410 1.1385 29 1 1.5817 1.6876 2.0285 30 1 3.8745 0.7621 1.8408 31 1 4.3883 2.2155 0.9508 32 1 3.2408 3.0315 3.3987 33 1 4.6120 4.2513 6.1843 34 1 1.7341 0.2759 -2.4439 35 1 3.3756 3.6929 -3.4757 36 1 1.9474 3.9024 -4.5172 37 1 1.7676 3.9188 -2.7464 38 1 2.2808 0.1932 -4.8648 39 1 2.6094 3.0705 -6.0692 40 1 2.8189 1.4820 -6.9827 41 1 0.4177 0.8603 -6.4517 42 1 0.2083 2.4484 -5.5379 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715726801.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:44:47 Heat of formation + Delta-G solvation = -2.137367 kcal Electronic energy + Delta-G solvation = -20091.729301 eV Core-core repulsion = 17072.651600 eV Total energy + Delta-G solvation = -3019.077701 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.17519 -38.95824 -37.53110 -36.37509 -34.28569 -33.47681 -31.53695 -29.87619 -28.33319 -26.02514 -24.82172 -24.12932 -23.21716 -23.02051 -20.50438 -19.24739 -19.01688 -18.29527 -17.30784 -16.86497 -16.33587 -16.11821 -15.67747 -15.29461 -15.16579 -14.98419 -14.72466 -14.39502 -14.15541 -13.85186 -13.46839 -13.08878 -12.95296 -12.89489 -12.78138 -12.71276 -12.41789 -12.30428 -12.24902 -12.14288 -11.90233 -11.83350 -11.81944 -11.30702 -11.00533 -10.55254 -9.98101 -9.54608 -9.09241 -7.99731 -5.31004 0.34486 1.44514 1.47930 1.56206 2.00515 2.26061 2.54596 3.03024 3.33184 3.45200 3.86359 3.91709 3.96425 4.01740 4.11952 4.16594 4.20666 4.21827 4.31401 4.45104 4.53135 4.56873 4.68673 4.74645 4.83172 4.88686 4.95855 5.01338 5.04067 5.07117 5.13652 5.16555 5.27689 5.37096 5.41557 5.52353 5.53898 5.64373 6.21639 6.50340 7.24271 7.27579 7.98764 8.24937 9.23718 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.027627 B = 0.003568 C = 0.003328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.246425 B = 7845.752250 C = 8411.877273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.097 3.903 3 N -0.604 5.604 4 C 0.125 3.875 5 C 0.151 3.849 6 N -0.743 5.743 7 C -0.253 4.253 8 H 0.073 0.927 9 C -0.073 4.073 10 N -0.968 5.968 11 Si 0.980 3.020 12 H -0.287 1.287 13 H -0.289 1.289 14 H -0.267 1.267 15 C 0.532 3.468 16 O -0.583 6.583 17 C -0.234 4.234 18 C 0.002 3.998 19 C -0.124 4.124 20 C -0.143 4.143 21 C -0.172 4.172 22 C -0.156 4.156 23 H 0.056 0.944 24 H 0.092 0.908 25 H 0.046 0.954 26 H 0.103 0.897 27 H 0.083 0.917 28 H 0.057 0.943 29 H 0.091 0.909 30 H 0.029 0.971 31 H -0.002 1.002 32 H 0.375 0.625 33 H 0.254 0.746 34 H 0.159 0.841 35 H 0.063 0.937 36 H 0.076 0.924 37 H 0.063 0.937 38 H 0.132 0.868 39 H 0.096 0.904 40 H 0.115 0.885 41 H 0.119 0.881 42 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.538 -10.774 -23.175 27.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.025 4.025 3 N -0.336 5.336 4 C 0.001 3.999 5 C 0.023 3.977 6 N -0.386 5.386 7 C -0.384 4.384 8 H 0.090 0.910 9 C -0.266 4.266 10 N -0.618 5.618 11 Si 0.807 3.193 12 H -0.214 1.214 13 H -0.215 1.215 14 H -0.192 1.192 15 C 0.325 3.675 16 O -0.465 6.465 17 C -0.254 4.254 18 C 0.001 3.999 19 C -0.180 4.180 20 C -0.160 4.160 21 C -0.209 4.209 22 C -0.193 4.193 23 H 0.075 0.925 24 H 0.111 0.889 25 H 0.065 0.935 26 H 0.121 0.879 27 H 0.101 0.899 28 H 0.076 0.924 29 H 0.109 0.891 30 H 0.047 0.953 31 H 0.016 0.984 32 H 0.207 0.793 33 H 0.063 0.937 34 H 0.176 0.824 35 H 0.081 0.919 36 H 0.095 0.905 37 H 0.082 0.918 38 H 0.150 0.850 39 H 0.114 0.886 40 H 0.134 0.866 41 H 0.137 0.863 42 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -10.174 -10.278 -23.140 27.288 hybrid contribution 0.726 0.586 1.185 1.508 sum -9.449 -9.692 -21.955 25.792 Atomic orbital electron populations 1.22157 0.94480 1.03569 1.01944 1.21913 0.95488 0.80404 1.04649 1.47916 1.65263 1.15646 1.04738 1.21258 0.95690 0.97519 0.85437 1.20934 0.94933 0.95072 0.86735 1.42402 1.12077 1.61107 1.23045 1.19597 0.90272 1.25871 1.02680 0.90951 1.25650 1.01867 1.00305 0.98749 1.69825 1.33639 1.38451 1.19924 0.85062 0.78935 0.78077 0.77188 1.21447 1.21528 1.19198 1.19242 0.77088 0.85672 0.85503 1.90766 1.47980 1.19839 1.87959 1.22405 1.10881 1.02146 0.89956 1.22022 0.88803 0.95393 0.93723 1.21078 1.02231 0.92408 1.02250 1.21318 1.07281 1.00022 0.87427 1.23173 0.99002 1.01353 0.97376 1.23071 0.91334 1.04015 1.00866 0.92477 0.88928 0.93517 0.87854 0.89898 0.92401 0.89113 0.95341 0.98404 0.79275 0.93726 0.82394 0.91866 0.90492 0.91787 0.84998 0.88597 0.86634 0.86254 0.88867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.68 10.24 71.98 0.74 -1.95 16 2 C 0.10 1.94 5.88 86.38 0.51 2.45 16 3 N -0.60 -18.13 2.47 -826.08 -2.04 -20.17 16 4 C 0.12 4.65 5.52 86.38 0.48 5.13 16 5 C 0.15 6.84 6.58 86.38 0.57 7.41 16 6 N -0.74 -41.05 5.60 -343.44 -1.92 -42.98 16 7 C -0.25 -15.05 9.99 84.03 0.84 -14.21 16 8 H 0.07 4.17 7.83 -2.91 -0.02 4.15 16 9 C -0.07 -4.39 5.50 84.86 0.47 -3.93 16 10 N -0.97 -61.27 13.06 21.65 0.28 -60.99 16 11 Si 0.98 47.68 29.55 68.60 2.03 49.71 16 12 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 13 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 14 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 15 C 0.53 17.22 7.48 86.57 0.65 17.86 16 16 O -0.58 -24.04 12.86 -4.10 -0.05 -24.09 16 17 C -0.23 -5.36 8.89 23.43 0.21 -5.15 16 18 C 0.00 0.05 5.81 -17.62 -0.10 -0.05 16 19 C -0.12 -3.08 7.91 71.23 0.56 -2.51 16 20 C -0.14 -1.99 6.01 -11.54 -0.07 -2.06 16 21 C -0.17 -2.02 9.76 30.59 0.30 -1.72 16 22 C -0.16 -1.67 10.10 30.59 0.31 -1.36 16 23 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 24 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 25 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 26 H 0.10 1.55 6.03 -2.39 -0.01 1.54 16 27 H 0.08 1.67 8.07 -2.39 -0.02 1.65 16 28 H 0.06 2.45 7.42 -2.38 -0.02 2.44 16 29 H 0.09 3.07 8.07 -2.39 -0.02 3.05 16 30 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.00 -0.10 8.14 -2.38 -0.02 -0.12 16 32 H 0.38 21.64 7.67 -92.71 -0.71 20.93 16 33 H 0.25 15.42 8.31 -92.70 -0.77 14.64 16 34 H 0.16 2.51 6.17 -2.91 -0.02 2.49 16 35 H 0.06 1.79 8.05 -2.38 -0.02 1.77 16 36 H 0.08 1.47 6.30 -2.39 -0.02 1.45 16 37 H 0.06 1.98 6.11 -2.39 -0.01 1.96 16 38 H 0.13 1.44 8.14 -2.39 -0.02 1.42 16 39 H 0.10 1.25 6.42 -2.39 -0.02 1.23 16 40 H 0.12 0.98 8.14 -2.38 -0.02 0.96 16 41 H 0.12 0.83 8.14 -2.39 -0.02 0.81 16 42 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 Total: -1.00 -74.97 344.26 4.03 -70.94 By element: Atomic # 1 Polarization: 27.38 SS G_CDS: 0.29 Total: 27.67 kcal Atomic # 6 Polarization: -5.54 SS G_CDS: 5.45 Total: -0.09 kcal Atomic # 7 Polarization: -120.45 SS G_CDS: -3.68 Total: -124.14 kcal Atomic # 8 Polarization: -24.04 SS G_CDS: -0.05 Total: -24.09 kcal Atomic # 14 Polarization: 47.68 SS G_CDS: 2.03 Total: 49.71 kcal Total: -74.97 4.03 -70.94 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715726801.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.804 kcal (2) G-P(sol) polarization free energy of solvation -74.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds