Wall clock time and date at job start Mon Mar 30 2020 01:32:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36936 * 120.00047 * 2 1 4 4 H 1.08001 * 120.00194 * 202.34589 * 3 2 1 5 5 C 1.38815 * 120.00276 * 22.34903 * 3 2 1 6 6 N 1.31618 * 119.99830 * 11.34141 * 5 3 2 7 7 Si 1.86799 * 120.00157 * 191.34730 * 5 3 2 8 8 H 1.48498 * 109.47035 * 59.99899 * 7 5 3 9 9 H 1.48504 * 109.46856 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.47091 * 299.99472 * 7 5 3 11 11 C 1.46501 * 119.99988 * 180.02562 * 2 1 3 12 12 C 1.52999 * 109.46978 * 269.99795 * 11 2 1 13 13 N 1.46501 * 109.46978 * 180.02562 * 12 11 2 14 14 C 1.46500 * 119.99988 * 90.00205 * 13 12 11 15 15 C 1.34779 * 120.00013 * 269.72110 * 13 12 11 16 16 O 1.21282 * 120.00002 * 0.28354 * 15 13 12 17 17 C 1.50694 * 120.00015 * 180.27383 * 15 13 12 18 18 C 1.53002 * 109.46946 * 180.02562 * 17 15 13 19 19 H 1.09002 * 110.34607 * 52.71631 * 18 17 15 20 20 C 1.51103 * 110.39165 * 290.30429 * 18 17 15 21 21 C 1.30523 * 111.10687 * 224.75628 * 20 18 17 22 22 C 1.51107 * 111.10417 * 359.97438 * 21 20 18 23 23 C 1.54635 * 104.72178 * 16.44385 * 22 21 20 24 24 H 1.09005 * 109.46878 * 274.21149 * 1 2 3 25 25 H 1.09002 * 109.47300 * 34.20806 * 1 2 3 26 26 H 1.08997 * 109.47260 * 154.21302 * 1 2 3 27 27 H 0.96998 * 120.00304 * 180.02562 * 6 5 3 28 28 H 1.09000 * 109.46912 * 149.99854 * 11 2 1 29 29 H 1.08994 * 109.47008 * 29.99625 * 11 2 1 30 30 H 1.09000 * 109.47251 * 60.00267 * 12 11 2 31 31 H 1.09000 * 109.47538 * 299.99904 * 12 11 2 32 32 H 1.09004 * 109.47049 * 269.72372 * 14 13 12 33 33 H 1.08996 * 109.47380 * 29.72483 * 14 13 12 34 34 H 1.09001 * 109.47105 * 149.72437 * 14 13 12 35 35 H 1.08997 * 109.47487 * 300.00723 * 17 15 13 36 36 H 1.08997 * 109.46888 * 60.00724 * 17 15 13 37 37 H 1.08001 * 124.44256 * 44.72985 * 20 18 17 38 38 H 1.07999 * 124.44657 * 179.97438 * 21 20 18 39 39 H 1.08997 * 110.38853 * 257.62920 * 22 21 20 40 40 H 1.08998 * 110.38246 * 135.24858 * 22 21 20 41 41 H 1.09004 * 111.03433 * 217.33181 * 23 22 21 42 42 H 1.09004 * 111.03919 * 93.39682 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1689 1.2210 -0.3556 5 6 1.5339 2.3430 0.4571 6 7 0.3842 2.2691 1.0936 7 14 2.3367 4.0048 0.1687 8 1 2.4915 4.2332 -1.2904 9 1 1.4845 5.0736 0.7490 10 1 3.6721 4.0287 0.8180 11 6 2.1975 -1.2687 -0.0006 12 6 2.4525 -1.7110 1.4417 13 7 3.1856 -2.9794 1.4412 14 6 4.6506 -2.9788 1.4414 15 6 2.5122 -4.1469 1.4462 16 8 1.2993 -4.1474 1.4460 17 6 3.2662 -5.4516 1.4519 18 6 2.2724 -6.6150 1.4562 19 1 1.5559 -6.5043 0.6423 20 6 1.5562 -6.6906 2.7846 21 6 1.4978 -7.9205 3.2177 22 6 2.1649 -8.8703 2.2501 23 6 3.0199 -7.9631 1.3353 24 1 -0.3633 0.0755 1.0250 25 1 -0.3634 0.8499 -0.5778 26 1 -0.3633 -0.9253 -0.4470 27 1 -0.0463 3.0776 1.4127 28 1 3.1499 -1.1381 -0.5144 29 1 1.6084 -2.0281 -0.5147 30 1 1.5001 -1.8416 1.9555 31 1 3.0416 -0.9516 1.9559 32 1 5.0140 -2.9831 0.4137 33 1 5.0135 -2.0865 1.9514 34 1 5.0142 -3.8664 1.9591 35 1 3.8930 -5.5130 0.5622 36 1 3.8927 -5.5053 2.3421 37 1 1.1468 -5.8387 3.3072 38 1 1.0337 -8.2199 4.1458 39 1 1.4161 -9.4031 1.6639 40 1 2.8001 -9.5749 2.7869 41 1 3.0111 -8.3248 0.3070 42 1 4.0401 -7.8795 1.7102 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715753661.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:19 Heat of formation + Delta-G solvation = -15.365962 kcal Electronic energy + Delta-G solvation = -20427.179091 eV Core-core repulsion = 17407.527756 eV Total energy + Delta-G solvation = -3019.651336 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.11510 -39.27749 -37.76578 -36.32902 -33.59664 -32.51804 -30.22242 -29.71932 -28.01284 -27.49141 -26.56989 -24.62708 -22.45863 -21.33853 -20.26141 -19.38697 -18.82062 -17.92110 -17.15953 -17.00141 -16.74999 -16.33771 -15.72062 -15.52571 -15.22474 -14.65986 -14.16145 -14.11911 -13.89324 -13.51562 -13.32691 -13.04991 -12.84347 -12.76528 -12.73223 -12.70794 -12.61339 -12.48120 -12.11308 -12.03873 -11.97357 -11.94946 -11.66508 -11.60723 -10.70254 -10.67335 -9.77552 -9.72446 -8.80542 -7.84479 -5.34920 1.39816 1.46783 1.50269 1.56924 1.73895 2.11330 2.51783 3.30406 3.54619 3.74319 3.76220 3.92577 4.01279 4.17990 4.33354 4.39078 4.48339 4.55303 4.59585 4.64844 4.70111 4.75079 4.77879 4.82295 4.92127 4.96980 5.00972 5.04050 5.13561 5.15026 5.25561 5.32705 5.46294 5.53631 5.63329 5.63859 5.71589 6.00081 6.29207 6.54800 7.10186 7.30056 7.80526 8.28043 9.19955 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.042004 B = 0.003623 C = 0.003473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 666.437872 B = 7726.299386 C = 8059.642534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.182 3.818 2 N -0.617 5.617 3 C -0.268 4.268 4 H 0.079 0.921 5 C -0.055 4.055 6 N -0.942 5.942 7 Si 0.977 3.023 8 H -0.277 1.277 9 H -0.296 1.296 10 H -0.270 1.270 11 C 0.151 3.849 12 C 0.112 3.888 13 N -0.616 5.616 14 C 0.072 3.928 15 C 0.497 3.503 16 O -0.589 6.589 17 C -0.117 4.117 18 C -0.057 4.057 19 H 0.063 0.937 20 C -0.171 4.171 21 C -0.172 4.172 22 C -0.099 4.099 23 C -0.112 4.112 24 H 0.000 1.000 25 H 0.024 0.976 26 H 0.016 0.984 27 H 0.249 0.751 28 H 0.058 0.942 29 H 0.033 0.967 30 H 0.037 0.963 31 H 0.067 0.933 32 H 0.071 0.929 33 H 0.072 0.928 34 H 0.101 0.899 35 H 0.122 0.878 36 H 0.115 0.885 37 H 0.093 0.907 38 H 0.128 0.872 39 H 0.077 0.923 40 H 0.088 0.912 41 H 0.086 0.914 42 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.595 -20.898 1.584 23.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.341 5.341 3 C -0.397 4.397 4 H 0.096 0.904 5 C -0.250 4.250 6 N -0.588 5.588 7 Si 0.804 3.196 8 H -0.203 1.203 9 H -0.223 1.223 10 H -0.195 1.195 11 C 0.024 3.976 12 C -0.014 4.014 13 N -0.349 5.349 14 C -0.070 4.070 15 C 0.287 3.713 16 O -0.469 6.469 17 C -0.157 4.157 18 C -0.076 4.076 19 H 0.081 0.919 20 C -0.189 4.189 21 C -0.190 4.190 22 C -0.136 4.136 23 C -0.150 4.150 24 H 0.019 0.981 25 H 0.043 0.957 26 H 0.034 0.966 27 H 0.058 0.942 28 H 0.076 0.924 29 H 0.051 0.949 30 H 0.055 0.945 31 H 0.086 0.914 32 H 0.089 0.911 33 H 0.090 0.910 34 H 0.120 0.880 35 H 0.140 0.860 36 H 0.133 0.867 37 H 0.111 0.889 38 H 0.146 0.854 39 H 0.095 0.905 40 H 0.106 0.894 41 H 0.104 0.896 42 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 10.890 -20.761 1.624 23.500 hybrid contribution -0.547 1.587 0.266 1.699 sum 10.343 -19.174 1.890 21.868 Atomic orbital electron populations 1.20497 0.83042 0.95469 0.97360 1.44161 1.02036 1.01779 1.86077 1.19579 0.98443 0.86192 1.35533 0.90354 1.25915 0.98379 1.02256 0.98432 1.70266 1.19392 1.27708 1.41471 0.85206 0.77729 0.78776 0.77890 1.20339 1.22266 1.19533 1.21113 0.95701 0.86414 0.94407 1.21947 0.95666 0.84095 0.99645 1.48161 1.08684 1.05324 1.72742 1.22092 0.76946 1.04588 1.03325 1.21607 0.87953 0.86689 0.75030 1.90684 1.16512 1.88064 1.51665 1.21782 0.98727 0.88848 1.06293 1.20843 0.96002 0.94975 0.95732 0.91870 1.23248 1.00833 0.97509 0.97302 1.23528 1.00654 0.94980 0.99853 1.21400 0.98669 0.97502 0.96020 1.22565 0.99358 0.92161 1.00885 0.98143 0.95746 0.96577 0.94231 0.92417 0.94879 0.94459 0.91444 0.91089 0.90953 0.88036 0.85985 0.86653 0.88915 0.85375 0.90507 0.89394 0.89554 0.88962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.98 9.01 127.77 1.15 11.13 16 2 N -0.62 -33.06 2.93 -726.94 -2.13 -35.19 16 3 C -0.27 -14.95 9.67 84.03 0.81 -14.14 16 4 H 0.08 4.12 7.84 -2.91 -0.02 4.10 16 5 C -0.06 -3.13 5.13 84.86 0.44 -2.70 16 6 N -0.94 -57.48 10.58 21.65 0.23 -57.26 16 7 Si 0.98 45.21 29.57 68.60 2.03 47.24 16 8 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 9 H -0.30 -13.90 7.11 99.48 0.71 -13.19 16 10 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 11 C 0.15 6.66 6.03 86.38 0.52 7.18 16 12 C 0.11 4.58 5.78 86.38 0.50 5.08 16 13 N -0.62 -18.78 2.87 -846.76 -2.43 -21.22 16 14 C 0.07 1.38 10.29 127.77 1.31 2.70 16 15 C 0.50 15.52 7.47 87.65 0.66 16.18 16 16 O -0.59 -24.53 14.50 -3.04 -0.04 -24.58 16 17 C -0.12 -2.27 3.65 29.85 0.11 -2.16 16 18 C -0.06 -1.22 2.52 -10.86 -0.03 -1.24 16 19 H 0.06 1.68 7.90 -2.39 -0.02 1.66 16 20 C -0.17 -4.23 9.26 26.27 0.24 -3.99 16 21 C -0.17 -3.36 10.78 26.27 0.28 -3.07 16 22 C -0.10 -1.41 6.81 30.53 0.21 -1.20 16 23 C -0.11 -1.52 6.71 31.70 0.21 -1.30 16 24 H 0.00 0.01 7.42 -2.38 -0.02 0.00 16 25 H 0.02 1.39 7.19 -2.39 -0.02 1.38 16 26 H 0.02 0.79 7.84 -2.39 -0.02 0.77 16 27 H 0.25 14.73 8.31 -92.71 -0.77 13.95 16 28 H 0.06 2.34 8.03 -2.39 -0.02 2.32 16 29 H 0.03 1.48 7.86 -2.39 -0.02 1.46 16 30 H 0.04 1.79 7.42 -2.39 -0.02 1.78 16 31 H 0.07 2.81 7.89 -2.39 -0.02 2.80 16 32 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.07 1.41 7.89 -2.39 -0.02 1.39 16 34 H 0.10 1.23 6.44 -2.39 -0.02 1.21 16 35 H 0.12 1.66 8.11 -2.39 -0.02 1.64 16 36 H 0.12 1.70 7.39 -2.39 -0.02 1.69 16 37 H 0.09 2.85 7.58 -2.91 -0.02 2.82 16 38 H 0.13 2.19 8.06 -2.91 -0.02 2.17 16 39 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 40 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 41 H 0.09 0.96 8.14 -2.38 -0.02 0.94 16 42 H 0.09 0.90 7.91 -2.39 -0.02 0.88 16 Total: -1.00 -73.57 338.53 5.04 -68.53 By element: Atomic # 1 Polarization: 9.05 SS G_CDS: 0.97 Total: 10.02 kcal Atomic # 6 Polarization: 6.04 SS G_CDS: 6.42 Total: 12.46 kcal Atomic # 7 Polarization: -109.33 SS G_CDS: -4.33 Total: -113.66 kcal Atomic # 8 Polarization: -24.53 SS G_CDS: -0.04 Total: -24.58 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 2.03 Total: 47.24 kcal Total: -73.57 5.04 -68.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715753661.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.161 kcal (2) G-P(sol) polarization free energy of solvation -73.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds