Wall clock time and date at job start Mon Mar 30 2020 00:44:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46497 * 109.47188 * 2 1 4 4 C 1.46500 * 120.00784 * 270.00147 * 3 2 1 5 5 C 1.52997 * 109.47088 * 89.99417 * 4 3 2 6 6 N 1.46497 * 109.47493 * 180.02562 * 5 4 3 7 7 C 1.36940 * 120.00279 * 180.02562 * 6 5 4 8 8 H 1.07995 * 119.99927 * 0.02562 * 7 6 5 9 9 C 1.38813 * 119.99904 * 180.02562 * 7 6 5 10 10 N 1.31621 * 119.99816 * 0.02562 * 9 7 6 11 11 Si 1.86797 * 119.99828 * 180.02562 * 9 7 6 12 12 H 1.48497 * 109.47287 * 0.02562 * 11 9 7 13 13 H 1.48503 * 109.47103 * 120.00420 * 11 9 7 14 14 H 1.48502 * 109.47060 * 240.00192 * 11 9 7 15 15 C 1.34785 * 120.00049 * 89.99908 * 3 2 1 16 16 O 1.21280 * 120.00330 * 180.02562 * 15 3 2 17 17 C 1.50701 * 119.99545 * 0.02562 * 15 3 2 18 18 H 1.09006 * 115.55980 * 325.57374 * 17 15 3 19 19 C 1.53117 * 117.51552 * 111.31618 * 17 15 3 20 20 C 1.52459 * 117.51341 * 179.84692 * 17 15 3 21 21 C 1.53257 * 128.58812 * 134.94262 * 20 17 15 22 22 C 1.53888 * 86.88407 * 194.89042 * 21 20 17 23 23 C 1.53262 * 128.58362 * 10.14743 * 20 17 15 24 24 H 1.09002 * 109.47153 * 299.99573 * 1 2 3 25 25 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47261 * 59.99745 * 1 2 3 27 27 H 1.08996 * 109.47853 * 120.00399 * 2 1 3 28 28 H 1.09002 * 109.47153 * 240.00427 * 2 1 3 29 29 H 1.08987 * 109.47905 * 210.00002 * 4 3 2 30 30 H 1.09002 * 109.46739 * 330.00111 * 4 3 2 31 31 H 1.09000 * 109.47464 * 300.01054 * 5 4 3 32 32 H 1.09003 * 109.47288 * 60.00692 * 5 4 3 33 33 H 0.96999 * 119.99786 * 0.02562 * 6 5 4 34 34 H 0.97002 * 119.99662 * 179.97438 * 10 9 7 35 35 H 1.09005 * 117.51511 * 214.89289 * 19 17 15 36 36 H 1.09000 * 117.51318 * 359.97438 * 19 17 15 37 37 H 1.08992 * 113.65035 * 309.39115 * 21 20 17 38 38 H 1.09002 * 113.64349 * 80.39308 * 21 20 17 39 39 H 1.09000 * 113.58789 * 270.39539 * 22 21 20 40 40 H 1.08999 * 113.66155 * 139.58862 * 22 21 20 41 41 H 1.09000 * 113.64352 * 279.60870 * 23 20 17 42 42 H 1.08996 * 113.64839 * 50.61446 * 23 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0720 -1.2686 5 6 0.9875 2.7931 -1.7103 6 7 1.2314 3.4834 -2.9792 7 6 0.2275 4.2019 -3.5719 8 1 -0.7439 4.2599 -3.1037 9 6 0.4586 4.8555 -4.7745 10 7 1.6424 4.7843 -5.3454 11 14 -0.9106 5.8360 -5.5827 12 1 -2.1348 5.7595 -4.7456 13 1 -0.4911 7.2542 -5.7168 14 1 -1.1942 5.2744 -6.9278 15 6 2.2429 2.0166 1.1673 16 8 2.6468 3.1602 1.1673 17 6 1.9923 1.3059 2.4723 18 1 1.1558 0.6069 2.4741 19 6 3.2099 0.9541 3.3315 20 6 2.2686 2.0766 3.7584 21 6 1.4043 2.1713 5.0205 22 6 2.2800 3.3691 5.4287 23 6 2.5754 3.5682 3.9317 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5139 -0.8900 27 1 1.8934 -0.5139 0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 3.0643 2.7985 -1.1383 30 1 2.5506 1.3453 -2.0283 31 1 0.1856 2.0665 -1.8406 32 1 0.6994 3.5198 -0.9506 33 1 2.1041 3.4316 -3.3995 34 1 1.8038 5.2407 -6.1859 35 1 3.1741 0.0241 3.8989 36 1 4.1921 1.2364 2.9525 37 1 0.3662 2.4366 4.8207 38 1 1.5030 1.3116 5.6833 39 1 3.1567 3.0894 6.0129 40 1 1.7183 4.1895 5.8754 41 1 3.6129 3.8283 3.7216 42 1 1.8633 4.2224 3.4288 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715760080.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:44:55 Heat of formation + Delta-G solvation = 24.266267 kcal Electronic energy + Delta-G solvation = -20511.383670 eV Core-core repulsion = 17493.450917 eV Total energy + Delta-G solvation = -3017.932753 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.46228 -38.64119 -36.07652 -34.54873 -33.69148 -31.58505 -30.29063 -27.86002 -25.75772 -24.75428 -23.47788 -23.18885 -22.53130 -21.22053 -19.16490 -18.20297 -17.31000 -17.00282 -15.94523 -15.38392 -15.29602 -14.74020 -14.54744 -14.16026 -13.82207 -13.28188 -13.26207 -13.03528 -12.89807 -12.58378 -12.35855 -12.20510 -11.79690 -11.66837 -11.50584 -11.26811 -11.12882 -10.91455 -10.84010 -10.55810 -10.43604 -10.18385 -10.04550 -9.81462 -9.73179 -9.43313 -8.83364 -8.44774 -6.88816 -5.73044 -3.01860 2.63501 3.10244 3.46122 3.51607 3.54069 3.66559 4.18695 4.50136 4.58749 4.64294 4.67508 4.77645 4.87171 4.98572 5.21779 5.24480 5.36919 5.41491 5.48415 5.54651 5.58488 5.69612 5.71337 5.72035 5.75993 5.79108 5.82781 5.89546 6.08325 6.10802 6.12131 6.21660 6.28780 6.34257 6.67452 6.84575 6.98564 7.61165 7.73917 8.41551 8.46240 9.56530 10.13411 10.48491 11.50068 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.024900 B = 0.004006 C = 0.003749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1124.234585 B = 6988.689944 C = 7467.489110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.108 3.892 3 N -0.606 5.606 4 C 0.109 3.891 5 C 0.143 3.857 6 N -0.731 5.731 7 C -0.236 4.236 8 H 0.070 0.930 9 C -0.015 4.015 10 N -0.934 5.934 11 Si 0.908 3.092 12 H -0.280 1.280 13 H -0.291 1.291 14 H -0.291 1.291 15 C 0.541 3.459 16 O -0.528 6.528 17 C -0.177 4.177 18 H 0.122 0.878 19 C -0.124 4.124 20 C -0.127 4.127 21 C -0.098 4.098 22 C -0.142 4.142 23 C -0.083 4.083 24 H 0.055 0.945 25 H 0.063 0.937 26 H 0.070 0.930 27 H 0.076 0.924 28 H 0.079 0.921 29 H 0.083 0.917 30 H 0.075 0.925 31 H 0.020 0.980 32 H 0.021 0.979 33 H 0.383 0.617 34 H 0.254 0.746 35 H 0.104 0.896 36 H 0.100 0.900 37 H 0.085 0.915 38 H 0.067 0.933 39 H 0.078 0.922 40 H 0.068 0.932 41 H 0.068 0.932 42 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.450 -12.434 20.317 23.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.016 4.016 3 N -0.339 5.339 4 C -0.014 4.014 5 C 0.014 3.986 6 N -0.376 5.376 7 C -0.367 4.367 8 H 0.088 0.912 9 C -0.210 4.210 10 N -0.583 5.583 11 Si 0.739 3.261 12 H -0.206 1.206 13 H -0.218 1.218 14 H -0.219 1.219 15 C 0.329 3.671 16 O -0.404 6.404 17 C -0.198 4.198 18 H 0.140 0.860 19 C -0.161 4.161 20 C -0.128 4.128 21 C -0.135 4.135 22 C -0.180 4.180 23 C -0.120 4.120 24 H 0.074 0.926 25 H 0.082 0.918 26 H 0.089 0.911 27 H 0.095 0.905 28 H 0.098 0.902 29 H 0.101 0.899 30 H 0.094 0.906 31 H 0.038 0.962 32 H 0.039 0.961 33 H 0.217 0.783 34 H 0.064 0.936 35 H 0.122 0.878 36 H 0.119 0.881 37 H 0.104 0.896 38 H 0.086 0.914 39 H 0.097 0.903 40 H 0.087 0.913 41 H 0.087 0.913 42 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 1.510 -11.741 20.274 23.477 hybrid contribution -0.618 0.338 -0.866 1.116 sum 0.892 -11.403 19.409 22.528 Atomic orbital electron populations 1.22335 0.95892 1.02021 1.03303 1.21550 0.94637 0.82487 1.02901 1.47885 1.65897 1.14028 1.06077 1.21699 0.99649 0.96808 0.83234 1.20985 0.94139 0.94214 0.89242 1.42239 1.13726 1.59964 1.21641 1.19254 0.92315 1.22914 1.02240 0.91201 1.24743 0.96961 1.01269 0.98068 1.69675 1.21012 1.48079 1.19484 0.86100 0.81133 0.79749 0.79130 1.20571 1.21816 1.21850 1.19609 0.77309 0.86100 0.84119 1.90715 1.45295 1.17360 1.87048 1.22224 1.02244 1.04702 0.90608 0.86025 1.22792 0.94084 0.98601 1.00630 1.22303 1.01531 0.95281 0.93667 1.22496 0.98233 0.98600 0.94207 1.22813 0.99853 0.98172 0.97143 1.22327 1.02461 0.92882 0.94308 0.92614 0.91784 0.91147 0.90549 0.90244 0.89860 0.90634 0.96199 0.96088 0.78314 0.93566 0.87821 0.88137 0.89625 0.91408 0.90291 0.91305 0.91290 0.89265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.88 10.12 37.16 0.38 -1.51 16 2 C 0.11 1.16 5.80 -4.04 -0.02 1.13 16 3 N -0.61 -8.95 2.47 -173.70 -0.43 -9.38 16 4 C 0.11 1.95 5.56 -4.04 -0.02 1.93 16 5 C 0.14 3.12 6.58 -4.04 -0.03 3.09 16 6 N -0.73 -19.57 5.60 -59.91 -0.34 -19.91 16 7 C -0.24 -6.91 9.99 -15.06 -0.15 -7.06 16 8 H 0.07 2.00 7.83 -52.49 -0.41 1.59 16 9 C -0.01 -0.43 5.50 -17.43 -0.10 -0.53 16 10 N -0.93 -29.00 13.06 55.49 0.72 -28.28 16 11 Si 0.91 23.04 29.55 -169.99 -5.02 18.02 16 12 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 13 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 14 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 15 C 0.54 8.47 7.46 -10.98 -0.08 8.39 16 16 O -0.53 -10.40 14.72 5.56 0.08 -10.31 16 17 C -0.18 -2.04 4.79 -91.99 -0.44 -2.48 16 18 H 0.12 1.18 6.49 -51.93 -0.34 0.84 16 19 C -0.12 -1.19 10.24 -26.88 -0.28 -1.46 16 20 C -0.13 -1.39 2.88 -154.73 -0.45 -1.84 16 21 C -0.10 -0.87 8.10 -26.14 -0.21 -1.08 16 22 C -0.14 -1.29 8.08 -25.81 -0.21 -1.50 16 23 C -0.08 -1.00 6.47 -26.13 -0.17 -1.17 16 24 H 0.05 0.59 7.45 -51.93 -0.39 0.21 16 25 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.07 0.92 6.26 -51.93 -0.33 0.60 16 27 H 0.08 0.65 6.64 -51.93 -0.34 0.30 16 28 H 0.08 0.79 7.89 -51.93 -0.41 0.38 16 29 H 0.08 1.66 7.42 -51.94 -0.39 1.27 16 30 H 0.08 1.24 7.89 -51.93 -0.41 0.83 16 31 H 0.02 0.43 6.26 -51.93 -0.33 0.10 16 32 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.38 10.64 7.67 -40.82 -0.31 10.33 16 34 H 0.25 7.59 8.31 -40.82 -0.34 7.25 16 35 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 37 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 39 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 42 H 0.09 1.25 8.05 -51.93 -0.42 0.83 16 LS Contribution 339.76 15.07 5.12 5.12 Total: -1.00 -33.74 339.76 -8.64 -42.38 By element: Atomic # 1 Polarization: 13.45 SS G_CDS: -7.01 Total: 6.45 kcal Atomic # 6 Polarization: -2.31 SS G_CDS: -1.78 Total: -4.09 kcal Atomic # 7 Polarization: -57.52 SS G_CDS: -0.04 Total: -57.56 kcal Atomic # 8 Polarization: -10.40 SS G_CDS: 0.08 Total: -10.31 kcal Atomic # 14 Polarization: 23.04 SS G_CDS: -5.02 Total: 18.02 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -33.74 -8.64 -42.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715760080.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.647 kcal (2) G-P(sol) polarization free energy of solvation -33.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.380 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds