Wall clock time and date at job start Mon Mar 30 2020 00:44:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46497 * 109.47188 * 2 1 4 4 C 1.46500 * 120.00784 * 270.00147 * 3 2 1 5 5 C 1.52997 * 109.47088 * 89.99417 * 4 3 2 6 6 N 1.46497 * 109.47493 * 180.02562 * 5 4 3 7 7 C 1.36940 * 120.00279 * 180.02562 * 6 5 4 8 8 H 1.07995 * 119.99927 * 0.02562 * 7 6 5 9 9 C 1.38813 * 119.99904 * 180.02562 * 7 6 5 10 10 N 1.31621 * 119.99816 * 0.02562 * 9 7 6 11 11 Si 1.86797 * 119.99828 * 180.02562 * 9 7 6 12 12 H 1.48497 * 109.47287 * 0.02562 * 11 9 7 13 13 H 1.48503 * 109.47103 * 120.00420 * 11 9 7 14 14 H 1.48502 * 109.47060 * 240.00192 * 11 9 7 15 15 C 1.34785 * 120.00049 * 89.99908 * 3 2 1 16 16 O 1.21280 * 120.00330 * 180.02562 * 15 3 2 17 17 C 1.50701 * 119.99545 * 0.02562 * 15 3 2 18 18 H 1.09006 * 115.55980 * 325.57374 * 17 15 3 19 19 C 1.53117 * 117.51552 * 111.31618 * 17 15 3 20 20 C 1.52459 * 117.51341 * 179.84692 * 17 15 3 21 21 C 1.53257 * 128.58812 * 134.94262 * 20 17 15 22 22 C 1.53888 * 86.88407 * 194.89042 * 21 20 17 23 23 C 1.53262 * 128.58362 * 10.14743 * 20 17 15 24 24 H 1.09002 * 109.47153 * 299.99573 * 1 2 3 25 25 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47261 * 59.99745 * 1 2 3 27 27 H 1.08996 * 109.47853 * 120.00399 * 2 1 3 28 28 H 1.09002 * 109.47153 * 240.00427 * 2 1 3 29 29 H 1.08987 * 109.47905 * 210.00002 * 4 3 2 30 30 H 1.09002 * 109.46739 * 330.00111 * 4 3 2 31 31 H 1.09000 * 109.47464 * 300.01054 * 5 4 3 32 32 H 1.09003 * 109.47288 * 60.00692 * 5 4 3 33 33 H 0.96999 * 119.99786 * 0.02562 * 6 5 4 34 34 H 0.97002 * 119.99662 * 179.97438 * 10 9 7 35 35 H 1.09005 * 117.51511 * 214.89289 * 19 17 15 36 36 H 1.09000 * 117.51318 * 359.97438 * 19 17 15 37 37 H 1.08992 * 113.65035 * 309.39115 * 21 20 17 38 38 H 1.09002 * 113.64349 * 80.39308 * 21 20 17 39 39 H 1.09000 * 113.58789 * 270.39539 * 22 21 20 40 40 H 1.08999 * 113.66155 * 139.58862 * 22 21 20 41 41 H 1.09000 * 113.64352 * 279.60870 * 23 20 17 42 42 H 1.08996 * 113.64839 * 50.61446 * 23 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0720 -1.2686 5 6 0.9875 2.7931 -1.7103 6 7 1.2314 3.4834 -2.9792 7 6 0.2275 4.2019 -3.5719 8 1 -0.7439 4.2599 -3.1037 9 6 0.4586 4.8555 -4.7745 10 7 1.6424 4.7843 -5.3454 11 14 -0.9106 5.8360 -5.5827 12 1 -2.1348 5.7595 -4.7456 13 1 -0.4911 7.2542 -5.7168 14 1 -1.1942 5.2744 -6.9278 15 6 2.2429 2.0166 1.1673 16 8 2.6468 3.1602 1.1673 17 6 1.9923 1.3059 2.4723 18 1 1.1558 0.6069 2.4741 19 6 3.2099 0.9541 3.3315 20 6 2.2686 2.0766 3.7584 21 6 1.4043 2.1713 5.0205 22 6 2.2800 3.3691 5.4287 23 6 2.5754 3.5682 3.9317 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5139 -0.8900 27 1 1.8934 -0.5139 0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 3.0643 2.7985 -1.1383 30 1 2.5506 1.3453 -2.0283 31 1 0.1856 2.0665 -1.8406 32 1 0.6994 3.5198 -0.9506 33 1 2.1041 3.4316 -3.3995 34 1 1.8038 5.2407 -6.1859 35 1 3.1741 0.0241 3.8989 36 1 4.1921 1.2364 2.9525 37 1 0.3662 2.4366 4.8207 38 1 1.5030 1.3116 5.6833 39 1 3.1567 3.0894 6.0129 40 1 1.7183 4.1895 5.8754 41 1 3.6129 3.8283 3.7216 42 1 1.8633 4.2224 3.4288 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715760080.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:44:55 Heat of formation + Delta-G solvation = 3.143082 kcal Electronic energy + Delta-G solvation = -20512.299640 eV Core-core repulsion = 17493.450917 eV Total energy + Delta-G solvation = -3018.848723 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.51859 -39.65408 -37.48783 -36.34797 -34.65802 -33.47043 -31.58462 -29.52755 -26.59255 -26.29758 -24.97122 -23.93994 -23.69212 -22.86661 -20.25171 -19.25658 -19.10853 -18.28288 -17.16093 -16.78628 -16.28326 -16.07496 -15.85206 -15.58485 -15.23538 -15.01530 -14.80480 -14.46771 -13.99243 -13.61675 -13.27314 -13.21305 -13.04969 -12.92549 -12.73200 -12.60423 -12.44505 -12.38743 -12.26025 -12.11546 -11.97224 -11.81846 -11.25918 -11.02671 -10.99497 -10.72740 -10.56999 -9.73561 -9.09857 -8.01132 -5.32285 1.43387 1.45825 1.49321 1.55985 1.93741 2.52817 2.78460 3.30032 3.32328 3.69059 3.73108 3.87417 3.92080 3.99022 4.00876 4.15613 4.18613 4.22483 4.43614 4.50208 4.52047 4.61043 4.63730 4.80259 4.81560 4.85472 4.90080 4.92548 5.01967 5.05767 5.09863 5.10988 5.16618 5.39968 5.40613 5.43915 5.52783 5.58797 6.20519 6.44834 7.21363 7.26394 7.97495 8.23610 9.22530 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.024900 B = 0.004006 C = 0.003749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1124.234585 B = 6988.689944 C = 7467.489110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.101 3.899 3 N -0.604 5.604 4 C 0.123 3.877 5 C 0.151 3.849 6 N -0.744 5.744 7 C -0.252 4.252 8 H 0.071 0.929 9 C -0.072 4.072 10 N -0.968 5.968 11 Si 0.979 3.021 12 H -0.268 1.268 13 H -0.292 1.292 14 H -0.285 1.285 15 C 0.530 3.470 16 O -0.582 6.582 17 C -0.183 4.183 18 H 0.149 0.851 19 C -0.100 4.100 20 C -0.141 4.141 21 C -0.085 4.085 22 C -0.131 4.131 23 C -0.100 4.100 24 H 0.053 0.947 25 H 0.095 0.905 26 H 0.038 0.962 27 H 0.111 0.889 28 H 0.091 0.909 29 H 0.056 0.944 30 H 0.094 0.906 31 H 0.033 0.967 32 H -0.007 1.007 33 H 0.375 0.625 34 H 0.254 0.746 35 H 0.144 0.856 36 H 0.087 0.913 37 H 0.084 0.916 38 H 0.095 0.905 39 H 0.094 0.906 40 H 0.074 0.926 41 H 0.048 0.952 42 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.408 -14.903 22.046 26.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.020 4.020 3 N -0.336 5.336 4 C -0.001 4.001 5 C 0.024 3.976 6 N -0.387 5.387 7 C -0.384 4.384 8 H 0.089 0.911 9 C -0.264 4.264 10 N -0.618 5.618 11 Si 0.807 3.193 12 H -0.192 1.192 13 H -0.219 1.219 14 H -0.212 1.212 15 C 0.320 3.680 16 O -0.462 6.462 17 C -0.204 4.204 18 H 0.167 0.833 19 C -0.137 4.137 20 C -0.142 4.142 21 C -0.122 4.122 22 C -0.168 4.168 23 C -0.137 4.137 24 H 0.072 0.928 25 H 0.113 0.887 26 H 0.058 0.942 27 H 0.129 0.871 28 H 0.109 0.891 29 H 0.074 0.926 30 H 0.112 0.888 31 H 0.051 0.949 32 H 0.011 0.989 33 H 0.207 0.793 34 H 0.063 0.937 35 H 0.161 0.839 36 H 0.106 0.894 37 H 0.102 0.898 38 H 0.113 0.887 39 H 0.112 0.888 40 H 0.092 0.908 41 H 0.067 0.933 42 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 0.442 -14.264 22.036 26.254 hybrid contribution -0.266 1.119 -1.388 1.802 sum 0.175 -13.146 20.648 24.478 Atomic orbital electron populations 1.22295 0.95652 1.03517 1.01647 1.21904 0.94749 0.80130 1.05204 1.48006 1.65562 1.15437 1.04580 1.21323 0.96622 0.96715 0.85470 1.21010 0.96536 0.93537 0.86562 1.42424 1.12949 1.60339 1.22981 1.19613 0.92892 1.23213 1.02639 0.91075 1.25634 0.99523 1.02554 0.98735 1.69829 1.23031 1.49084 1.19835 0.85010 0.78500 0.77707 0.78126 1.19196 1.21856 1.21192 1.20492 0.76084 0.85711 0.85666 1.90694 1.47697 1.19899 1.87901 1.22233 1.04481 1.05410 0.88234 0.83321 1.22926 0.92488 0.99328 0.98978 1.22524 1.02898 0.94477 0.94276 1.22456 0.97546 0.99171 0.93027 1.22799 1.00615 0.98742 0.94687 1.22308 1.00367 0.94016 0.97055 0.92751 0.88675 0.94244 0.87122 0.89089 0.92583 0.88787 0.94919 0.98897 0.79287 0.93714 0.83862 0.89430 0.89777 0.88655 0.88783 0.90774 0.93319 0.92431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.26 10.12 71.98 0.73 -2.53 16 2 C 0.10 1.91 5.80 86.38 0.50 2.41 16 3 N -0.60 -17.60 2.47 -821.83 -2.03 -19.64 16 4 C 0.12 4.52 5.56 86.38 0.48 5.00 16 5 C 0.15 6.84 6.58 86.38 0.57 7.41 16 6 N -0.74 -41.10 5.60 -343.46 -1.92 -43.02 16 7 C -0.25 -15.03 9.99 84.03 0.84 -14.19 16 8 H 0.07 4.13 7.83 -2.91 -0.02 4.10 16 9 C -0.07 -4.31 5.50 84.86 0.47 -3.85 16 10 N -0.97 -61.16 13.06 21.65 0.28 -60.88 16 11 Si 0.98 47.72 29.55 68.60 2.03 49.75 16 12 H -0.27 -12.34 7.11 99.48 0.71 -11.64 16 13 H -0.29 -14.17 7.11 99.48 0.71 -13.47 16 14 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 15 C 0.53 16.76 7.46 87.66 0.65 17.42 16 16 O -0.58 -24.36 14.72 -3.03 -0.04 -24.40 16 17 C -0.18 -3.85 4.79 -11.68 -0.06 -3.90 16 18 H 0.15 2.30 6.49 -2.38 -0.02 2.29 16 19 C -0.10 -1.62 10.24 30.50 0.31 -1.31 16 20 C -0.14 -2.87 2.88 -52.32 -0.15 -3.02 16 21 C -0.08 -1.26 8.10 30.98 0.25 -1.01 16 22 C -0.13 -2.19 8.08 31.19 0.25 -1.94 16 23 C -0.10 -2.52 6.47 30.98 0.20 -2.32 16 24 H 0.05 1.03 7.45 -2.39 -0.02 1.02 16 25 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 26 H 0.04 0.99 6.26 -2.38 -0.01 0.97 16 27 H 0.11 1.39 6.64 -2.39 -0.02 1.37 16 28 H 0.09 1.54 7.89 -2.39 -0.02 1.53 16 29 H 0.06 2.37 7.42 -2.39 -0.02 2.35 16 30 H 0.09 3.10 7.89 -2.39 -0.02 3.08 16 31 H 0.03 1.42 6.26 -2.39 -0.01 1.40 16 32 H -0.01 -0.35 8.14 -2.39 -0.02 -0.37 16 33 H 0.38 21.62 7.67 -92.71 -0.71 20.91 16 34 H 0.25 15.37 8.31 -92.71 -0.77 14.60 16 35 H 0.14 1.24 8.14 -2.38 -0.02 1.22 16 36 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 37 H 0.08 1.28 8.14 -2.39 -0.02 1.27 16 38 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 39 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 40 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 41 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 42 H 0.06 1.77 8.05 -2.39 -0.02 1.75 16 Total: -1.00 -76.61 339.76 3.65 -72.97 By element: Atomic # 1 Polarization: 26.78 SS G_CDS: 0.29 Total: 27.07 kcal Atomic # 6 Polarization: -6.88 SS G_CDS: 5.05 Total: -1.84 kcal Atomic # 7 Polarization: -119.86 SS G_CDS: -3.67 Total: -123.54 kcal Atomic # 8 Polarization: -24.36 SS G_CDS: -0.04 Total: -24.40 kcal Atomic # 14 Polarization: 47.72 SS G_CDS: 2.03 Total: 49.75 kcal Total: -76.61 3.65 -72.97 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715760080.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.108 kcal (2) G-P(sol) polarization free energy of solvation -76.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.965 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds