Wall clock time and date at job start Mon Mar 30 2020 00:44:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46505 * 109.47212 * 2 1 4 4 C 1.46496 * 119.99619 * 89.99960 * 3 2 1 5 5 C 1.53007 * 109.47224 * 90.00069 * 4 3 2 6 6 N 1.46497 * 109.47192 * 179.97438 * 5 4 3 7 7 C 1.36935 * 119.99827 * 179.97438 * 6 5 4 8 8 H 1.07994 * 120.00381 * 0.02562 * 7 6 5 9 9 C 1.38822 * 119.99915 * 180.02562 * 7 6 5 10 10 N 1.31612 * 119.99668 * 180.02562 * 9 7 6 11 11 Si 1.86800 * 119.99690 * 0.02562 * 9 7 6 12 12 H 1.48498 * 109.47168 * 90.00423 * 11 9 7 13 13 H 1.48503 * 109.46952 * 209.99836 * 11 9 7 14 14 H 1.48497 * 109.47249 * 329.99734 * 11 9 7 15 15 C 1.34774 * 120.00261 * 270.00136 * 3 2 1 16 16 O 1.21270 * 120.00172 * 180.02562 * 15 3 2 17 17 C 1.50706 * 119.99638 * 359.97438 * 15 3 2 18 18 H 1.08998 * 115.56141 * 34.26372 * 17 15 3 19 19 C 1.53126 * 117.51060 * 248.46184 * 17 15 3 20 20 C 1.52460 * 59.85714 * 252.55403 * 19 17 15 21 21 C 1.53257 * 128.58460 * 117.59879 * 20 19 17 22 22 C 1.53891 * 86.88013 * 114.94618 * 21 20 19 23 23 C 1.53249 * 128.58378 * 242.39979 * 20 19 17 24 24 H 1.09002 * 109.47153 * 300.00008 * 1 2 3 25 25 H 1.08998 * 109.47533 * 59.99637 * 1 2 3 26 26 H 1.08996 * 109.47853 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47153 * 239.99992 * 2 1 3 28 28 H 1.09001 * 109.46832 * 120.00183 * 2 1 3 29 29 H 1.09006 * 109.47349 * 209.99918 * 4 3 2 30 30 H 1.09003 * 109.47665 * 330.00083 * 4 3 2 31 31 H 1.09002 * 109.46832 * 299.99655 * 5 4 3 32 32 H 1.08997 * 109.46824 * 59.99917 * 5 4 3 33 33 H 0.97000 * 120.00314 * 0.02562 * 6 5 4 34 34 H 0.97005 * 119.99989 * 179.97438 * 10 9 7 35 35 H 1.09000 * 117.51033 * 0.02562 * 19 17 15 36 36 H 1.09001 * 117.51084 * 145.10152 * 19 17 15 37 37 H 1.09001 * 113.64840 * 229.44306 * 21 20 19 38 38 H 1.09002 * 113.64505 * 0.45388 * 21 20 19 39 39 H 1.09003 * 113.58857 * 270.39268 * 22 21 20 40 40 H 1.08996 * 113.58820 * 139.57286 * 22 21 20 41 41 H 1.08999 * 113.64734 * 359.55601 * 23 20 19 42 42 H 1.09005 * 113.64389 * 130.47138 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0718 1.2687 5 6 3.7075 1.8313 1.7105 6 7 3.9518 2.5223 2.9789 7 6 5.1839 2.4494 3.5721 8 1 5.9756 1.8828 3.1046 9 6 5.4153 3.1038 4.7743 10 7 6.5996 3.0340 5.3441 11 14 4.0456 4.0832 5.5832 12 1 3.2787 3.1995 6.4976 13 1 4.6313 5.2072 6.3570 14 1 3.1382 4.6214 4.5382 15 6 2.2430 2.0166 -1.1671 16 8 2.6477 3.1598 -1.1671 17 6 1.9923 1.3060 -2.4723 18 1 1.1576 0.6050 -2.4734 19 6 3.2097 0.9590 -3.3339 20 6 2.2653 2.0781 -3.7583 21 6 2.5684 3.5704 -3.9312 22 6 2.2716 3.3713 -5.4280 23 6 1.3994 2.1712 -5.0193 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3635 -1.0276 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 2.0955 3.1411 1.1385 30 1 1.5817 1.6877 2.0284 31 1 3.8744 0.7621 1.8408 32 1 4.3883 2.2155 0.9509 33 1 3.2407 3.0309 3.3990 34 1 6.7614 3.4916 6.1840 35 1 4.1916 1.2443 -2.9563 36 1 3.1760 0.0292 -3.9018 37 1 1.8552 4.2227 -3.4271 38 1 3.6055 3.8329 -3.7223 39 1 3.1483 3.0941 -6.0134 40 1 1.7063 4.1899 -5.8732 41 1 1.4993 1.3121 -5.6827 42 1 0.3605 2.4325 -4.8179 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715760082.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:44:58 Heat of formation + Delta-G solvation = 27.544847 kcal Electronic energy + Delta-G solvation = -20488.576838 eV Core-core repulsion = 17470.786254 eV Total energy + Delta-G solvation = -3017.790583 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.51956 -38.70173 -36.15019 -34.78385 -33.73639 -31.77268 -30.50932 -28.19646 -25.80054 -24.76316 -23.63012 -23.21278 -22.43448 -21.25610 -19.13233 -18.24250 -17.59496 -17.16004 -16.22220 -15.38157 -15.20713 -15.12200 -14.38544 -14.10467 -13.93831 -13.64300 -13.59664 -13.11077 -12.70536 -12.58857 -12.41291 -12.23409 -11.90702 -11.69764 -11.57741 -11.52040 -11.28314 -11.09114 -11.04451 -10.71408 -10.47025 -10.21273 -10.14406 -9.86336 -9.58629 -9.50888 -8.86987 -8.53312 -7.21620 -5.74009 -3.09908 2.58410 2.99391 3.40186 3.43476 3.47819 3.64950 4.14387 4.46485 4.55678 4.62077 4.64002 4.73396 4.80768 4.88161 5.08338 5.21217 5.27891 5.35336 5.44898 5.50835 5.51629 5.54191 5.61379 5.63124 5.66271 5.70452 5.71870 5.79521 5.83492 5.98866 6.03430 6.06923 6.18210 6.28450 6.52889 6.67916 6.86384 7.52125 8.01470 8.34416 8.44464 9.23135 9.95377 10.14929 11.44434 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.024842 B = 0.004173 C = 0.003879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1126.873127 B = 6708.439721 C = 7217.430308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.104 3.896 3 N -0.606 5.606 4 C 0.105 3.895 5 C 0.148 3.852 6 N -0.754 5.754 7 C -0.242 4.242 8 H 0.089 0.911 9 C 0.004 3.996 10 N -0.935 5.935 11 Si 0.885 3.115 12 H -0.284 1.284 13 H -0.290 1.290 14 H -0.276 1.276 15 C 0.542 3.458 16 O -0.528 6.528 17 C -0.178 4.178 18 H 0.121 0.879 19 C -0.122 4.122 20 C -0.127 4.127 21 C -0.083 4.083 22 C -0.142 4.142 23 C -0.098 4.098 24 H 0.059 0.941 25 H 0.055 0.945 26 H 0.066 0.934 27 H 0.079 0.921 28 H 0.083 0.917 29 H 0.082 0.918 30 H 0.074 0.926 31 H 0.026 0.974 32 H 0.030 0.970 33 H 0.361 0.639 34 H 0.259 0.741 35 H 0.103 0.897 36 H 0.105 0.895 37 H 0.087 0.913 38 H 0.070 0.930 39 H 0.080 0.920 40 H 0.068 0.932 41 H 0.068 0.932 42 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.683 -6.847 -20.538 26.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.019 4.019 3 N -0.339 5.339 4 C -0.017 4.017 5 C 0.019 3.981 6 N -0.400 5.400 7 C -0.372 4.372 8 H 0.107 0.893 9 C -0.191 4.191 10 N -0.583 5.583 11 Si 0.715 3.285 12 H -0.210 1.210 13 H -0.216 1.216 14 H -0.203 1.203 15 C 0.329 3.671 16 O -0.404 6.404 17 C -0.199 4.199 18 H 0.139 0.861 19 C -0.159 4.159 20 C -0.128 4.128 21 C -0.120 4.120 22 C -0.179 4.179 23 C -0.135 4.135 24 H 0.079 0.921 25 H 0.074 0.926 26 H 0.085 0.915 27 H 0.097 0.903 28 H 0.102 0.898 29 H 0.101 0.899 30 H 0.093 0.907 31 H 0.044 0.956 32 H 0.048 0.952 33 H 0.193 0.807 34 H 0.069 0.931 35 H 0.121 0.879 36 H 0.123 0.877 37 H 0.105 0.895 38 H 0.089 0.911 39 H 0.098 0.902 40 H 0.086 0.914 41 H 0.086 0.914 42 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -14.222 -6.286 -20.484 25.717 hybrid contribution -0.946 0.483 0.916 1.403 sum -15.168 -5.803 -19.568 25.429 Atomic orbital electron populations 1.22230 0.96100 1.02138 1.02516 1.21575 0.94122 0.82643 1.03596 1.47832 1.65890 1.14238 1.05922 1.21689 0.97980 0.98375 0.83692 1.20882 0.92887 0.95771 0.88525 1.42569 1.12500 1.61610 1.23303 1.19038 0.88480 1.27013 1.02702 0.89269 1.24667 0.96485 1.00364 0.97631 1.69702 1.20942 1.47948 1.19671 0.86528 0.82257 0.80271 0.79420 1.21045 1.21639 1.20255 1.19637 0.77143 0.86147 0.84138 1.90712 1.44944 1.17701 1.87045 1.22206 1.02500 1.04719 0.90483 0.86082 1.22800 0.94208 0.98594 1.00308 1.22281 1.01628 0.95337 0.93550 1.22325 1.02552 0.92843 0.94304 1.22813 0.99906 0.98080 0.97148 1.22494 0.98081 0.98673 0.94291 0.92140 0.92606 0.91518 0.90256 0.89838 0.89912 0.90714 0.95607 0.95209 0.80690 0.93050 0.87871 0.87720 0.89481 0.91128 0.90177 0.91360 0.91374 0.89762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.43 10.12 37.16 0.38 -1.06 16 2 C 0.10 1.05 5.76 -4.04 -0.02 1.02 16 3 N -0.61 -8.48 2.47 -173.68 -0.43 -8.91 16 4 C 0.11 1.77 5.52 -4.04 -0.02 1.75 16 5 C 0.15 3.08 6.58 -4.04 -0.03 3.05 16 6 N -0.75 -18.92 5.41 -59.91 -0.32 -19.25 16 7 C -0.24 -7.17 10.47 -15.06 -0.16 -7.33 16 8 H 0.09 2.82 8.06 -52.49 -0.42 2.40 16 9 C 0.00 0.13 5.50 -17.43 -0.10 0.03 16 10 N -0.93 -30.09 13.97 55.49 0.78 -29.31 16 11 Si 0.89 22.67 27.74 -169.99 -4.71 17.96 16 12 H -0.28 -7.11 7.11 56.52 0.40 -6.71 16 13 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 14 H -0.28 -6.73 6.52 56.52 0.37 -6.36 16 15 C 0.54 8.14 7.46 -10.98 -0.08 8.05 16 16 O -0.53 -10.03 14.72 5.57 0.08 -9.95 16 17 C -0.18 -1.97 4.80 -91.98 -0.44 -2.41 16 18 H 0.12 1.07 6.48 -51.93 -0.34 0.73 16 19 C -0.12 -1.21 10.24 -26.94 -0.28 -1.49 16 20 C -0.13 -1.35 2.87 -154.80 -0.44 -1.79 16 21 C -0.08 -0.97 6.47 -26.13 -0.17 -1.14 16 22 C -0.14 -1.23 8.08 -25.81 -0.21 -1.44 16 23 C -0.10 -0.81 8.10 -26.14 -0.21 -1.02 16 24 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.05 0.46 7.46 -51.93 -0.39 0.08 16 26 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.08 0.67 6.64 -51.93 -0.34 0.32 16 28 H 0.08 0.84 8.07 -51.93 -0.42 0.42 16 29 H 0.08 1.53 7.42 -51.93 -0.39 1.15 16 30 H 0.07 1.12 8.07 -51.93 -0.42 0.70 16 31 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.36 8.72 5.53 -40.82 -0.23 8.50 16 34 H 0.26 7.92 8.31 -40.82 -0.34 7.58 16 35 H 0.10 1.18 8.14 -51.93 -0.42 0.76 16 36 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.09 1.12 8.05 -51.93 -0.42 0.70 16 38 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 39 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 LS Contribution 340.67 15.07 5.13 5.13 Total: -1.00 -34.50 340.67 -8.44 -42.94 By element: Atomic # 1 Polarization: 12.32 SS G_CDS: -7.18 Total: 5.15 kcal Atomic # 6 Polarization: -1.98 SS G_CDS: -1.78 Total: -3.77 kcal Atomic # 7 Polarization: -57.49 SS G_CDS: 0.02 Total: -57.47 kcal Atomic # 8 Polarization: -10.03 SS G_CDS: 0.08 Total: -9.95 kcal Atomic # 14 Polarization: 22.67 SS G_CDS: -4.71 Total: 17.96 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -34.50 -8.44 -42.94 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715760082.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.482 kcal (2) G-P(sol) polarization free energy of solvation -34.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.937 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds