Wall clock time and date at job start Mon Mar 30 2020 00:44:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46505 * 109.47212 * 2 1 4 4 C 1.46496 * 119.99619 * 89.99960 * 3 2 1 5 5 C 1.53007 * 109.47224 * 90.00069 * 4 3 2 6 6 N 1.46497 * 109.47192 * 179.97438 * 5 4 3 7 7 C 1.36935 * 119.99827 * 179.97438 * 6 5 4 8 8 H 1.07994 * 120.00381 * 0.02562 * 7 6 5 9 9 C 1.38822 * 119.99915 * 180.02562 * 7 6 5 10 10 N 1.31612 * 119.99668 * 180.02562 * 9 7 6 11 11 Si 1.86800 * 119.99690 * 0.02562 * 9 7 6 12 12 H 1.48498 * 109.47168 * 90.00423 * 11 9 7 13 13 H 1.48503 * 109.46952 * 209.99836 * 11 9 7 14 14 H 1.48497 * 109.47249 * 329.99734 * 11 9 7 15 15 C 1.34774 * 120.00261 * 270.00136 * 3 2 1 16 16 O 1.21270 * 120.00172 * 180.02562 * 15 3 2 17 17 C 1.50706 * 119.99638 * 359.97438 * 15 3 2 18 18 H 1.08998 * 115.56141 * 34.26372 * 17 15 3 19 19 C 1.53126 * 117.51060 * 248.46184 * 17 15 3 20 20 C 1.52460 * 59.85714 * 252.55403 * 19 17 15 21 21 C 1.53257 * 128.58460 * 117.59879 * 20 19 17 22 22 C 1.53891 * 86.88013 * 114.94618 * 21 20 19 23 23 C 1.53249 * 128.58378 * 242.39979 * 20 19 17 24 24 H 1.09002 * 109.47153 * 300.00008 * 1 2 3 25 25 H 1.08998 * 109.47533 * 59.99637 * 1 2 3 26 26 H 1.08996 * 109.47853 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47153 * 239.99992 * 2 1 3 28 28 H 1.09001 * 109.46832 * 120.00183 * 2 1 3 29 29 H 1.09006 * 109.47349 * 209.99918 * 4 3 2 30 30 H 1.09003 * 109.47665 * 330.00083 * 4 3 2 31 31 H 1.09002 * 109.46832 * 299.99655 * 5 4 3 32 32 H 1.08997 * 109.46824 * 59.99917 * 5 4 3 33 33 H 0.97000 * 120.00314 * 0.02562 * 6 5 4 34 34 H 0.97005 * 119.99989 * 179.97438 * 10 9 7 35 35 H 1.09000 * 117.51033 * 0.02562 * 19 17 15 36 36 H 1.09001 * 117.51084 * 145.10152 * 19 17 15 37 37 H 1.09001 * 113.64840 * 229.44306 * 21 20 19 38 38 H 1.09002 * 113.64505 * 0.45388 * 21 20 19 39 39 H 1.09003 * 113.58857 * 270.39268 * 22 21 20 40 40 H 1.08996 * 113.58820 * 139.57286 * 22 21 20 41 41 H 1.08999 * 113.64734 * 359.55601 * 23 20 19 42 42 H 1.09005 * 113.64389 * 130.47138 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0718 1.2687 5 6 3.7075 1.8313 1.7105 6 7 3.9518 2.5223 2.9789 7 6 5.1839 2.4494 3.5721 8 1 5.9756 1.8828 3.1046 9 6 5.4153 3.1038 4.7743 10 7 6.5996 3.0340 5.3441 11 14 4.0456 4.0832 5.5832 12 1 3.2787 3.1995 6.4976 13 1 4.6313 5.2072 6.3570 14 1 3.1382 4.6214 4.5382 15 6 2.2430 2.0166 -1.1671 16 8 2.6477 3.1598 -1.1671 17 6 1.9923 1.3060 -2.4723 18 1 1.1576 0.6050 -2.4734 19 6 3.2097 0.9590 -3.3339 20 6 2.2653 2.0781 -3.7583 21 6 2.5684 3.5704 -3.9312 22 6 2.2716 3.3713 -5.4280 23 6 1.3994 2.1712 -5.0193 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3635 -1.0276 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 2.0955 3.1411 1.1385 30 1 1.5817 1.6877 2.0284 31 1 3.8744 0.7621 1.8408 32 1 4.3883 2.2155 0.9509 33 1 3.2407 3.0309 3.3990 34 1 6.7614 3.4916 6.1840 35 1 4.1916 1.2443 -2.9563 36 1 3.1760 0.0292 -3.9018 37 1 1.8552 4.2227 -3.4271 38 1 3.6055 3.8329 -3.7223 39 1 3.1483 3.0941 -6.0134 40 1 1.7063 4.1899 -5.8732 41 1 1.4993 1.3121 -5.6827 42 1 0.3605 2.4325 -4.8179 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715760082.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:44:58 Heat of formation + Delta-G solvation = 5.481877 kcal Electronic energy + Delta-G solvation = -20489.533560 eV Core-core repulsion = 17470.786254 eV Total energy + Delta-G solvation = -3018.747306 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.53159 -39.66615 -37.53363 -36.48964 -34.66922 -33.73562 -31.77935 -29.71145 -26.59127 -26.24271 -24.74931 -23.95209 -23.86586 -22.85244 -20.31046 -19.57424 -19.10034 -18.25954 -17.39043 -16.61455 -16.40315 -16.08314 -15.95792 -15.47710 -15.43853 -15.04114 -14.77787 -14.61227 -14.01272 -13.61129 -13.44376 -13.21248 -13.08973 -12.99092 -12.86547 -12.63148 -12.43593 -12.40732 -12.23562 -12.15779 -11.99289 -11.87530 -11.26828 -11.05022 -11.01875 -10.74925 -10.58257 -9.73319 -9.40995 -8.08715 -5.44800 1.34823 1.39503 1.46566 1.48406 1.89856 2.44172 2.78863 3.21952 3.28117 3.66244 3.68553 3.75616 3.86891 3.91583 3.98735 4.10935 4.13025 4.15910 4.41825 4.48850 4.51122 4.59828 4.63033 4.79074 4.85549 4.87232 4.90073 4.93617 5.01797 5.02932 5.04688 5.10104 5.16999 5.37740 5.40977 5.51863 5.54481 5.67695 6.14140 6.42349 6.99239 7.19675 7.72536 7.94211 9.12699 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.024842 B = 0.004173 C = 0.003879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1126.873127 B = 6708.439721 C = 7217.430308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.097 3.903 3 N -0.604 5.604 4 C 0.119 3.881 5 C 0.152 3.848 6 N -0.755 5.755 7 C -0.245 4.245 8 H 0.051 0.949 9 C -0.061 4.061 10 N -0.981 5.981 11 Si 0.961 3.039 12 H -0.267 1.267 13 H -0.292 1.292 14 H -0.256 1.256 15 C 0.531 3.469 16 O -0.580 6.580 17 C -0.178 4.178 18 H 0.154 0.846 19 C -0.113 4.113 20 C -0.137 4.137 21 C -0.100 4.100 22 C -0.133 4.133 23 C -0.082 4.082 24 H 0.049 0.951 25 H 0.058 0.942 26 H 0.092 0.908 27 H 0.102 0.898 28 H 0.084 0.916 29 H 0.062 0.938 30 H 0.101 0.899 31 H 0.034 0.966 32 H -0.001 1.001 33 H 0.368 0.632 34 H 0.261 0.739 35 H 0.078 0.922 36 H 0.141 0.859 37 H 0.066 0.934 38 H 0.042 0.958 39 H 0.088 0.912 40 H 0.078 0.922 41 H 0.092 0.908 42 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.782 -8.375 -21.895 29.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.025 4.025 3 N -0.336 5.336 4 C -0.005 4.005 5 C 0.025 3.975 6 N -0.401 5.401 7 C -0.375 4.375 8 H 0.070 0.930 9 C -0.252 4.252 10 N -0.631 5.631 11 Si 0.786 3.214 12 H -0.193 1.193 13 H -0.219 1.219 14 H -0.181 1.181 15 C 0.321 3.679 16 O -0.460 6.460 17 C -0.199 4.199 18 H 0.171 0.829 19 C -0.150 4.150 20 C -0.138 4.138 21 C -0.137 4.137 22 C -0.170 4.170 23 C -0.119 4.119 24 H 0.068 0.932 25 H 0.077 0.923 26 H 0.110 0.890 27 H 0.120 0.880 28 H 0.103 0.897 29 H 0.081 0.919 30 H 0.119 0.881 31 H 0.052 0.948 32 H 0.017 0.983 33 H 0.202 0.798 34 H 0.070 0.930 35 H 0.097 0.903 36 H 0.159 0.841 37 H 0.084 0.916 38 H 0.061 0.939 39 H 0.107 0.893 40 H 0.096 0.904 41 H 0.110 0.890 42 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -17.365 -7.867 -21.878 29.018 hybrid contribution 0.142 0.929 1.308 1.610 sum -17.223 -6.938 -20.570 27.711 Atomic orbital electron populations 1.22175 0.94284 1.03666 1.02146 1.21905 0.95551 0.80211 1.04814 1.47968 1.65369 1.15694 1.04587 1.21363 0.95389 0.97934 0.85837 1.20929 0.95251 0.95314 0.86030 1.42519 1.11115 1.62095 1.24404 1.18983 0.89365 1.26308 1.02872 0.93048 1.25572 0.99429 1.01868 0.98357 1.69888 1.23587 1.49335 1.20317 0.85337 0.78984 0.78408 0.78629 1.19288 1.21865 1.18096 1.20464 0.76008 0.85797 0.85670 1.90690 1.47269 1.20163 1.87878 1.22238 1.04132 1.05257 0.88240 0.82852 1.22886 0.92588 0.99780 0.99733 1.22488 1.02525 0.94365 0.94407 1.22334 1.00297 0.94003 0.97095 1.22798 1.00556 0.98929 0.94697 1.22462 0.97731 0.98981 0.92733 0.93205 0.92322 0.88975 0.88005 0.89748 0.91923 0.88128 0.94828 0.98254 0.79842 0.93039 0.90320 0.84076 0.91555 0.93935 0.89343 0.90379 0.88955 0.89035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.17 10.12 71.98 0.73 -1.44 16 2 C 0.10 1.67 5.76 86.38 0.50 2.17 16 3 N -0.60 -16.31 2.47 -821.79 -2.03 -18.34 16 4 C 0.12 3.93 5.52 86.38 0.48 4.41 16 5 C 0.15 6.47 6.58 86.38 0.57 7.04 16 6 N -0.75 -38.11 5.41 -343.45 -1.86 -39.97 16 7 C -0.24 -14.86 10.47 84.04 0.88 -13.98 16 8 H 0.05 3.43 8.06 -2.91 -0.02 3.41 16 9 C -0.06 -3.71 5.50 84.87 0.47 -3.24 16 10 N -0.98 -64.73 13.97 21.65 0.30 -64.43 16 11 Si 0.96 46.77 27.74 68.60 1.90 48.67 16 12 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 13 H -0.29 -14.29 7.11 99.48 0.71 -13.59 16 14 H -0.26 -11.50 6.52 99.48 0.65 -10.86 16 15 C 0.53 15.89 7.46 87.66 0.65 16.54 16 16 O -0.58 -23.12 14.72 -3.00 -0.04 -23.16 16 17 C -0.18 -3.58 4.80 -11.67 -0.06 -3.63 16 18 H 0.15 2.06 6.48 -2.39 -0.02 2.05 16 19 C -0.11 -2.03 10.24 30.46 0.31 -1.72 16 20 C -0.14 -2.70 2.87 -52.37 -0.15 -2.85 16 21 C -0.10 -2.41 6.47 30.98 0.20 -2.21 16 22 C -0.13 -2.09 8.08 31.19 0.25 -1.84 16 23 C -0.08 -1.10 8.10 30.98 0.25 -0.85 16 24 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 25 H 0.06 0.76 7.46 -2.39 -0.02 0.74 16 26 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 27 H 0.10 1.33 6.64 -2.39 -0.02 1.32 16 28 H 0.08 1.48 8.07 -2.39 -0.02 1.46 16 29 H 0.06 2.35 7.42 -2.38 -0.02 2.33 16 30 H 0.10 2.82 8.07 -2.39 -0.02 2.80 16 31 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.00 -0.03 8.14 -2.39 -0.02 -0.05 16 33 H 0.37 17.39 5.53 -92.71 -0.51 16.88 16 34 H 0.26 16.22 8.31 -92.70 -0.77 15.45 16 35 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 36 H 0.14 1.52 8.14 -2.39 -0.02 1.50 16 37 H 0.07 1.83 8.05 -2.39 -0.02 1.81 16 38 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 39 H 0.09 1.25 8.14 -2.39 -0.02 1.24 16 40 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 41 H 0.09 0.84 8.14 -2.39 -0.02 0.83 16 42 H 0.09 1.12 8.14 -2.38 -0.02 1.10 16 Total: -1.00 -78.87 340.67 3.77 -75.10 By element: Atomic # 1 Polarization: 23.32 SS G_CDS: 0.42 Total: 23.74 kcal Atomic # 6 Polarization: -6.68 SS G_CDS: 5.08 Total: -1.60 kcal Atomic # 7 Polarization: -119.15 SS G_CDS: -3.59 Total: -122.74 kcal Atomic # 8 Polarization: -23.12 SS G_CDS: -0.04 Total: -23.16 kcal Atomic # 14 Polarization: 46.77 SS G_CDS: 1.90 Total: 48.67 kcal Total: -78.87 3.77 -75.10 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715760082.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.578 kcal (2) G-P(sol) polarization free energy of solvation -78.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.096 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds